Wall clock time and date at job start Tue Mar 31 2020 07:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81401 * 103.00254 * 2 1 4 4 H 1.09008 * 109.46689 * 54.99930 * 3 2 1 5 5 C 1.53000 * 109.47230 * 295.00479 * 3 2 1 6 6 C 1.52995 * 109.47197 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47028 * 59.99726 * 6 5 3 8 8 C 1.53002 * 109.47214 * 299.99815 * 7 6 5 9 9 H 1.08995 * 109.47133 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47274 * 300.00340 * 8 7 6 11 11 C 1.38860 * 119.99898 * 275.00006 * 10 8 7 12 12 C 1.39564 * 119.84246 * 359.72072 * 11 10 8 13 13 C 1.36340 * 120.16226 * 179.76280 * 12 11 10 14 14 C 1.40885 * 119.83573 * 0.49188 * 13 12 11 15 15 C 1.41136 * 120.15545 * 179.78386 * 14 13 12 16 16 H 1.08001 * 119.99814 * 204.58140 * 15 14 13 17 17 C 1.39861 * 120.00132 * 24.59190 * 15 14 13 18 18 N 1.30907 * 120.00267 * 17.96997 * 17 15 14 19 19 Si 1.86802 * 120.00040 * 197.98153 * 17 15 14 20 20 H 1.48505 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47401 * 119.99463 * 19 17 15 22 22 H 1.48504 * 109.46739 * 239.99489 * 19 17 15 23 23 C 1.40882 * 119.68742 * 359.76499 * 14 13 12 24 24 C 1.36342 * 119.83732 * 359.97438 * 23 14 13 25 25 C 1.52992 * 109.47209 * 174.99828 * 3 2 1 26 26 H 1.08994 * 109.47483 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.46917 * 299.99834 * 1 2 3 28 28 H 1.08998 * 109.47069 * 59.99509 * 1 2 3 29 29 H 1.08995 * 109.47274 * 59.99559 * 5 3 2 30 30 H 1.09007 * 109.46888 * 299.99912 * 5 3 2 31 31 H 1.08994 * 109.47408 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47148 * 299.99886 * 6 5 3 33 33 H 1.08997 * 109.47025 * 60.00085 * 7 6 5 34 34 H 1.09003 * 109.47053 * 180.02562 * 7 6 5 35 35 H 0.96998 * 120.00466 * 94.99577 * 10 8 7 36 36 H 1.07999 * 119.91803 * 0.02562 * 12 11 10 37 37 H 1.08002 * 120.08451 * 180.23582 * 13 12 11 38 38 H 0.96999 * 120.00227 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.08392 * 179.97438 * 23 14 13 40 40 H 1.08002 * 119.91661 * 180.02562 * 24 23 14 41 41 H 1.08995 * 109.47775 * 300.00337 * 25 3 2 42 42 H 1.09008 * 109.47212 * 60.00422 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8419 5 6 1.7428 2.4016 -1.3073 6 6 2.0865 3.8925 -1.3070 7 6 3.6013 4.0666 -1.1810 8 6 4.0806 3.4326 0.1263 9 1 5.1597 3.5570 0.2163 10 7 3.4181 4.0862 1.2578 11 6 3.9437 5.2569 1.7881 12 6 5.1064 5.8049 1.2445 13 6 5.6254 6.9568 1.7571 14 6 4.9907 7.5884 2.8448 15 6 5.5247 8.7786 3.3836 16 1 5.3149 9.0494 4.4078 17 6 6.3254 9.6074 2.5911 18 7 6.3012 9.4891 1.2876 19 14 7.4298 10.8831 3.3926 20 1 7.2743 10.8156 4.8680 21 1 8.8440 10.6112 3.0306 22 1 7.0484 12.2371 2.9166 23 6 3.8204 7.0266 3.3919 24 6 3.3097 5.8771 2.8657 25 6 3.7370 1.9411 0.1258 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 0.6636 2.2779 -1.3968 30 1 2.2354 1.9150 -2.1492 31 1 1.7454 4.3442 -2.2385 32 1 1.5936 4.3788 -0.4652 33 1 4.0942 3.5803 -2.0228 34 1 3.8461 5.1288 -1.1804 35 1 2.6123 3.7012 1.6364 36 1 5.5939 5.3176 0.4131 37 1 6.5231 7.3819 1.3330 38 1 6.8567 10.0637 0.7380 39 1 3.3288 7.5052 4.2260 40 1 2.4123 5.4455 3.2838 41 1 4.0785 1.4894 1.0570 42 1 4.2296 1.4545 -0.7161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921566368.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:41 Heat of formation + Delta-G solvation = 3.985617 kcal Electronic energy + Delta-G solvation = -20888.369296 eV Core-core repulsion = 17958.139036 eV Total energy + Delta-G solvation = -2930.230260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.28483 -37.34358 -34.31833 -32.70033 -30.88406 -30.18491 -29.42515 -28.94823 -27.81154 -24.33426 -22.74097 -22.65471 -20.93363 -20.55063 -18.71098 -17.20671 -16.99428 -15.93159 -15.40846 -15.14742 -14.94743 -14.48922 -14.06697 -13.89363 -13.70560 -13.43985 -13.10155 -12.87024 -12.66477 -12.26219 -12.13452 -12.03938 -11.89187 -11.63142 -11.45673 -11.31487 -11.03093 -10.85295 -10.65801 -10.51511 -10.49271 -10.11243 -9.79899 -9.67491 -9.26784 -9.21248 -8.50872 -7.86234 -7.48095 -6.63705 -6.37417 -4.02119 1.51797 2.40336 2.91127 3.10927 3.15927 3.21290 3.35868 4.06228 4.26951 4.55302 4.57965 4.77353 4.89426 4.90244 4.99071 5.15463 5.23763 5.32925 5.39787 5.45882 5.57503 5.65130 5.83859 5.88638 5.91910 5.95655 6.15350 6.24004 6.27904 6.38248 6.41101 6.49250 6.94573 6.96361 7.21296 7.36650 7.57320 7.69999 7.85192 8.16499 8.30612 8.50980 8.70738 8.81195 9.07316 9.16422 10.38056 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.038254 B = 0.003154 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.777016 B = 8874.563612 C = 9142.228424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.275 6.275 3 C -0.043 4.043 4 H 0.086 0.914 5 C -0.111 4.111 6 C -0.110 4.110 7 C -0.137 4.137 8 C 0.170 3.830 9 H 0.078 0.922 10 N -0.753 5.753 11 C 0.095 3.905 12 C -0.164 4.164 13 C -0.124 4.124 14 C 0.074 3.926 15 C -0.467 4.467 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.808 5.808 19 Si 0.901 3.099 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.277 1.277 23 C -0.187 4.187 24 C -0.160 4.160 25 C -0.104 4.104 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.380 0.620 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.275 0.725 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.495 -13.813 -5.892 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.046 6.046 3 C -0.172 4.172 4 H 0.104 0.896 5 C -0.150 4.150 6 C -0.150 4.150 7 C -0.177 4.177 8 C 0.061 3.939 9 H 0.096 0.904 10 N -0.388 5.388 11 C -0.002 4.002 12 C -0.186 4.186 13 C -0.144 4.144 14 C 0.071 3.929 15 C -0.498 4.498 16 H 0.090 0.910 17 C -0.140 4.140 18 N -0.435 5.435 19 Si 0.726 3.274 20 H -0.187 1.187 21 H -0.200 1.200 22 H -0.203 1.203 23 C -0.207 4.207 24 C -0.182 4.182 25 C -0.144 4.144 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.214 0.786 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.601 -14.644 -6.198 17.218 hybrid contribution -0.761 1.550 0.389 1.770 sum -7.362 -13.094 -5.809 16.106 Atomic orbital electron populations 1.23362 0.94470 1.06145 1.04917 1.86825 1.07184 1.12625 1.97950 1.23177 1.00602 0.92103 1.01289 0.89552 1.21858 1.00325 0.96668 0.96173 1.21442 0.97051 0.94521 1.01968 1.22062 0.95575 1.02347 0.97682 1.20558 0.97482 0.89214 0.86630 0.90369 1.43978 1.31100 1.27188 1.36572 1.17324 0.96520 0.89309 0.96997 1.20110 0.97296 0.98944 1.02224 1.20940 1.00502 0.93865 0.99083 1.17491 0.90406 0.92747 0.92249 1.19393 1.27055 1.04616 0.98728 0.90981 1.25784 0.96043 0.97771 0.94442 1.69864 1.33369 1.35537 1.04750 0.86385 0.80223 0.80093 0.80670 1.18656 1.19973 1.20309 1.20533 0.98166 0.98387 1.03607 1.19788 1.00601 0.98766 0.99077 1.21658 0.92190 0.97172 1.03341 0.88389 0.90584 0.90518 0.92414 0.90941 0.92154 0.91379 0.92136 0.90810 0.78613 0.89275 0.86452 0.91425 0.89193 0.89827 0.90629 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.45 101.05 1.06 0.10 16 2 S -0.27 -2.95 21.79 -107.50 -2.34 -5.30 16 3 C -0.04 -0.47 2.48 -26.74 -0.07 -0.53 16 4 H 0.09 0.98 6.50 -51.92 -0.34 0.64 16 5 C -0.11 -1.13 5.11 -26.73 -0.14 -1.27 16 6 C -0.11 -1.31 5.77 -26.73 -0.15 -1.46 16 7 C -0.14 -1.82 5.53 -26.73 -0.15 -1.97 16 8 C 0.17 2.37 2.47 -67.90 -0.17 2.20 16 9 H 0.08 1.19 6.43 -51.93 -0.33 0.86 16 10 N -0.75 -12.28 4.37 -52.01 -0.23 -12.50 16 11 C 0.10 2.00 6.65 -83.69 -0.56 1.44 16 12 C -0.16 -3.72 8.75 -39.77 -0.35 -4.07 16 13 C -0.12 -3.21 8.64 -39.26 -0.34 -3.55 16 14 C 0.07 1.99 5.57 -106.80 -0.60 1.39 16 15 C -0.47 -12.68 9.03 -37.88 -0.34 -13.03 16 16 H 0.07 1.90 7.91 -52.49 -0.41 1.49 16 17 C 0.07 1.92 5.13 -17.34 -0.09 1.84 16 18 N -0.81 -21.39 10.96 55.54 0.61 -20.78 16 19 Si 0.90 19.26 29.60 -169.99 -5.03 14.23 16 20 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 C -0.19 -4.60 9.74 -39.26 -0.38 -4.98 16 24 C -0.16 -3.54 9.82 -39.77 -0.39 -3.93 16 25 C -0.10 -1.22 4.90 -26.71 -0.13 -1.35 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.08 0.56 7.14 -51.92 -0.37 0.19 16 29 H 0.06 0.54 6.92 -51.93 -0.36 0.18 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.91 7.60 -51.93 -0.39 0.52 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.18 7.69 -51.93 -0.40 0.78 16 35 H 0.38 5.70 6.86 -40.82 -0.28 5.42 16 36 H 0.09 1.84 6.06 -52.49 -0.32 1.52 16 37 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 38 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 39 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 40 H 0.08 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 LS Contribution 338.78 15.07 5.11 5.11 Total: -1.00 -27.41 338.78 -11.15 -38.56 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.47 Total: 9.87 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: -2.79 Total: -29.19 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.38 Total: -33.28 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -2.34 Total: -5.30 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.41 -11.15 -38.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921566368.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.542 kcal (2) G-P(sol) polarization free energy of solvation -27.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds