Wall clock time and date at job start Tue Mar 31 2020 07:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81401 * 103.00254 * 2 1 4 4 H 1.09008 * 109.46689 * 54.99930 * 3 2 1 5 5 C 1.53000 * 109.47230 * 295.00479 * 3 2 1 6 6 C 1.52995 * 109.47197 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47028 * 59.99726 * 6 5 3 8 8 C 1.53002 * 109.47214 * 299.99815 * 7 6 5 9 9 H 1.08995 * 109.47133 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47274 * 300.00340 * 8 7 6 11 11 C 1.38860 * 119.99898 * 275.00006 * 10 8 7 12 12 C 1.39564 * 119.84246 * 359.72072 * 11 10 8 13 13 C 1.36340 * 120.16226 * 179.76280 * 12 11 10 14 14 C 1.40885 * 119.83573 * 0.49188 * 13 12 11 15 15 C 1.41136 * 120.15545 * 179.78386 * 14 13 12 16 16 H 1.08001 * 119.99814 * 204.58140 * 15 14 13 17 17 C 1.39861 * 120.00132 * 24.59190 * 15 14 13 18 18 N 1.30907 * 120.00267 * 17.96997 * 17 15 14 19 19 Si 1.86802 * 120.00040 * 197.98153 * 17 15 14 20 20 H 1.48505 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47401 * 119.99463 * 19 17 15 22 22 H 1.48504 * 109.46739 * 239.99489 * 19 17 15 23 23 C 1.40882 * 119.68742 * 359.76499 * 14 13 12 24 24 C 1.36342 * 119.83732 * 359.97438 * 23 14 13 25 25 C 1.52992 * 109.47209 * 174.99828 * 3 2 1 26 26 H 1.08994 * 109.47483 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.46917 * 299.99834 * 1 2 3 28 28 H 1.08998 * 109.47069 * 59.99509 * 1 2 3 29 29 H 1.08995 * 109.47274 * 59.99559 * 5 3 2 30 30 H 1.09007 * 109.46888 * 299.99912 * 5 3 2 31 31 H 1.08994 * 109.47408 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47148 * 299.99886 * 6 5 3 33 33 H 1.08997 * 109.47025 * 60.00085 * 7 6 5 34 34 H 1.09003 * 109.47053 * 180.02562 * 7 6 5 35 35 H 0.96998 * 120.00466 * 94.99577 * 10 8 7 36 36 H 1.07999 * 119.91803 * 0.02562 * 12 11 10 37 37 H 1.08002 * 120.08451 * 180.23582 * 13 12 11 38 38 H 0.96999 * 120.00227 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.08392 * 179.97438 * 23 14 13 40 40 H 1.08002 * 119.91661 * 180.02562 * 24 23 14 41 41 H 1.08995 * 109.47775 * 300.00337 * 25 3 2 42 42 H 1.09008 * 109.47212 * 60.00422 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8419 5 6 1.7428 2.4016 -1.3073 6 6 2.0865 3.8925 -1.3070 7 6 3.6013 4.0666 -1.1810 8 6 4.0806 3.4326 0.1263 9 1 5.1597 3.5570 0.2163 10 7 3.4181 4.0862 1.2578 11 6 3.9437 5.2569 1.7881 12 6 5.1064 5.8049 1.2445 13 6 5.6254 6.9568 1.7571 14 6 4.9907 7.5884 2.8448 15 6 5.5247 8.7786 3.3836 16 1 5.3149 9.0494 4.4078 17 6 6.3254 9.6074 2.5911 18 7 6.3012 9.4891 1.2876 19 14 7.4298 10.8831 3.3926 20 1 7.2743 10.8156 4.8680 21 1 8.8440 10.6112 3.0306 22 1 7.0484 12.2371 2.9166 23 6 3.8204 7.0266 3.3919 24 6 3.3097 5.8771 2.8657 25 6 3.7370 1.9411 0.1258 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 0.6636 2.2779 -1.3968 30 1 2.2354 1.9150 -2.1492 31 1 1.7454 4.3442 -2.2385 32 1 1.5936 4.3788 -0.4652 33 1 4.0942 3.5803 -2.0228 34 1 3.8461 5.1288 -1.1804 35 1 2.6123 3.7012 1.6364 36 1 5.5939 5.3176 0.4131 37 1 6.5231 7.3819 1.3330 38 1 6.8567 10.0637 0.7380 39 1 3.3288 7.5052 4.2260 40 1 2.4123 5.4455 3.2838 41 1 4.0785 1.4894 1.0570 42 1 4.2296 1.4545 -0.7161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921566368.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:38 Heat of formation + Delta-G solvation = -8.203514 kcal Electronic energy + Delta-G solvation = -20888.897856 eV Core-core repulsion = 17958.139036 eV Total energy + Delta-G solvation = -2930.758821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.55915 -38.97726 -35.97522 -34.32627 -31.88944 -31.56079 -31.19949 -29.86323 -29.25461 -26.15168 -23.90606 -23.67735 -22.65212 -22.15107 -19.96105 -19.14093 -18.23887 -17.21033 -16.73760 -16.55479 -16.26317 -15.63063 -15.47285 -15.04170 -14.66858 -14.54693 -14.42979 -14.17181 -13.96288 -13.75471 -13.61733 -13.42121 -13.13007 -12.92708 -12.73967 -12.70966 -12.62737 -12.35094 -12.27042 -11.73163 -11.58598 -11.49028 -11.23364 -11.08694 -10.98878 -10.67548 -10.21332 -9.37303 -8.67436 -8.53913 -8.12627 -5.98480 0.73946 1.12256 1.20801 1.40140 1.54181 1.59066 1.65794 2.27904 2.85402 2.90457 3.63555 3.67587 3.87691 3.97367 4.17356 4.22751 4.31227 4.35868 4.38588 4.43655 4.46500 4.52414 4.62866 4.69340 4.83946 4.88816 5.02661 5.04729 5.06558 5.12822 5.18176 5.26394 5.30803 5.37971 5.45221 5.48436 5.73117 5.83540 5.99180 6.21108 6.42064 6.69938 6.90785 7.10494 7.17008 7.33729 8.49471 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.038254 B = 0.003154 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.777016 B = 8874.563612 C = 9142.228424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.304 6.304 3 C -0.037 4.037 4 H 0.081 0.919 5 C -0.102 4.102 6 C -0.106 4.106 7 C -0.134 4.134 8 C 0.167 3.833 9 H 0.066 0.934 10 N -0.740 5.740 11 C 0.121 3.879 12 C -0.172 4.172 13 C -0.143 4.143 14 C 0.034 3.966 15 C -0.506 4.506 16 H 0.065 0.935 17 C 0.032 3.968 18 N -0.841 5.841 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.269 1.269 23 C -0.196 4.196 24 C -0.168 4.168 25 C -0.095 4.095 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.392 0.608 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.281 0.719 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.070 0.930 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.683 -15.535 -6.591 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.075 6.075 3 C -0.166 4.166 4 H 0.100 0.900 5 C -0.141 4.141 6 C -0.146 4.146 7 C -0.173 4.173 8 C 0.059 3.941 9 H 0.084 0.916 10 N -0.375 5.375 11 C 0.021 3.979 12 C -0.194 4.194 13 C -0.163 4.163 14 C 0.031 3.969 15 C -0.537 4.537 16 H 0.083 0.917 17 C -0.180 4.180 18 N -0.470 5.470 19 Si 0.796 3.204 20 H -0.186 1.186 21 H -0.191 1.191 22 H -0.194 1.194 23 C -0.216 4.216 24 C -0.191 4.191 25 C -0.134 4.134 26 H 0.129 0.871 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.227 0.773 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.088 0.912 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.816 -16.412 -6.913 19.448 hybrid contribution -0.531 1.872 0.538 2.019 sum -8.347 -14.539 -6.375 17.936 Atomic orbital electron populations 1.23438 0.91714 1.07293 1.05666 1.86951 1.10268 1.12285 1.98025 1.23066 0.99660 0.92360 1.01477 0.90028 1.21795 1.01293 0.95043 0.95980 1.21393 0.95549 0.95861 1.01774 1.22002 0.97038 1.00427 0.97864 1.20696 0.96605 0.90803 0.85992 0.91640 1.44008 1.31204 1.25525 1.36753 1.17391 0.95073 0.89801 0.95605 1.20248 0.98076 0.98313 1.02745 1.20866 1.00468 0.95230 0.99709 1.17798 0.91853 0.93651 0.93575 1.19595 1.29463 1.05858 0.98818 0.91668 1.26580 0.96888 0.99678 0.94843 1.69924 1.34269 1.36837 1.05940 0.85281 0.78191 0.77454 0.79450 1.18551 1.19140 1.19381 1.20727 0.97762 0.99318 1.03790 1.20070 1.01571 0.98156 0.99267 1.21537 0.93239 0.94925 1.03678 0.87089 0.90111 0.89480 0.91011 0.90239 0.91263 0.92970 0.90096 0.93891 0.77317 0.87582 0.88468 0.90841 0.88852 0.86813 0.91167 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.45 113.37 1.19 -0.25 16 2 S -0.30 -5.71 21.79 -56.49 -1.23 -6.94 16 3 C -0.04 -0.70 2.48 30.59 0.08 -0.62 16 4 H 0.08 1.62 6.50 -2.39 -0.02 1.60 16 5 C -0.10 -1.75 5.11 30.59 0.16 -1.59 16 6 C -0.11 -2.27 5.77 30.59 0.18 -2.10 16 7 C -0.13 -3.34 5.53 30.60 0.17 -3.17 16 8 C 0.17 4.37 2.47 45.01 0.11 4.48 16 9 H 0.07 1.92 6.43 -2.39 -0.02 1.90 16 10 N -0.74 -22.87 4.37 -318.46 -1.39 -24.26 16 11 C 0.12 4.97 6.65 38.67 0.26 5.23 16 12 C -0.17 -7.90 8.75 22.15 0.19 -7.71 16 13 C -0.14 -7.68 8.64 22.48 0.19 -7.49 16 14 C 0.03 1.90 5.57 -21.27 -0.12 1.79 16 15 C -0.51 -28.72 9.03 23.37 0.21 -28.51 16 16 H 0.07 3.62 7.91 -2.91 -0.02 3.59 16 17 C 0.03 1.69 5.13 85.22 0.44 2.13 16 18 N -0.84 -46.18 10.96 21.82 0.24 -45.95 16 19 Si 0.97 40.54 29.60 68.60 2.03 42.57 16 20 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 23 C -0.20 -9.84 9.74 22.47 0.22 -9.62 16 24 C -0.17 -7.31 9.82 22.15 0.22 -7.10 16 25 C -0.09 -1.99 4.90 30.61 0.15 -1.84 16 26 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.09 0.95 7.14 -2.39 -0.02 0.93 16 29 H 0.07 1.07 6.92 -2.39 -0.02 1.06 16 30 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.29 7.60 -2.39 -0.02 1.27 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.04 1.34 7.69 -2.39 -0.02 1.32 16 35 H 0.39 10.76 6.86 -92.71 -0.64 10.13 16 36 H 0.11 4.41 6.06 -2.91 -0.02 4.40 16 37 H 0.10 5.54 6.16 -2.91 -0.02 5.52 16 38 H 0.28 14.03 8.30 -92.71 -0.77 13.26 16 39 H 0.09 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -61.24 338.78 3.65 -57.59 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.37 Total: 33.36 kcal Atomic # 6 Polarization: -60.00 SS G_CDS: 3.64 Total: -56.37 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -1.15 Total: -70.21 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: -5.71 SS G_CDS: -1.23 Total: -6.94 kcal Total: -61.24 3.65 -57.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921566368.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.387 kcal (2) G-P(sol) polarization free energy of solvation -61.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds