Wall clock time and date at job start Tue Mar 31 2020 07:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81392 * 103.00211 * 2 1 4 4 H 1.09003 * 109.47202 * 55.00029 * 3 2 1 5 5 C 1.53007 * 109.47053 * 295.00094 * 3 2 1 6 6 C 1.52998 * 109.47007 * 179.97438 * 5 3 2 7 7 C 1.53011 * 109.47144 * 60.00024 * 6 5 3 8 8 C 1.53000 * 109.46883 * 299.99931 * 7 6 5 9 9 H 1.09003 * 109.47162 * 299.99687 * 8 7 6 10 10 N 1.46498 * 109.46920 * 179.97438 * 8 7 6 11 11 C 1.38858 * 119.99859 * 85.00036 * 10 8 7 12 12 C 1.39567 * 119.84182 * 359.72740 * 11 10 8 13 13 C 1.36343 * 120.15516 * 179.71888 * 12 11 10 14 14 C 1.40880 * 119.84067 * 0.55524 * 13 12 11 15 15 C 1.41134 * 120.15872 * 179.70093 * 14 13 12 16 16 H 1.08004 * 120.00103 * 204.62132 * 15 14 13 17 17 C 1.39868 * 119.99953 * 24.62087 * 15 14 13 18 18 N 1.30902 * 120.00024 * 17.96511 * 17 15 14 19 19 Si 1.86806 * 119.99938 * 197.96894 * 17 15 14 20 20 H 1.48495 * 109.46884 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46825 * 119.99746 * 19 17 15 22 22 H 1.48493 * 109.46971 * 239.99758 * 19 17 15 23 23 C 1.40888 * 119.68981 * 359.71464 * 14 13 12 24 24 C 1.36337 * 119.83371 * 0.02562 * 23 14 13 25 25 C 1.52998 * 109.47175 * 60.00088 * 8 7 6 26 26 H 1.09000 * 109.46908 * 60.00093 * 1 2 3 27 27 H 1.09002 * 109.47093 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46774 * 299.99687 * 1 2 3 29 29 H 1.08998 * 109.47160 * 60.00070 * 5 3 2 30 30 H 1.08993 * 109.46686 * 299.99619 * 5 3 2 31 31 H 1.09003 * 109.47403 * 300.00030 * 6 5 3 32 32 H 1.08997 * 109.47476 * 179.97438 * 6 5 3 33 33 H 1.08993 * 109.46982 * 59.99765 * 7 6 5 34 34 H 1.08996 * 109.47091 * 179.97438 * 7 6 5 35 35 H 0.96999 * 120.00240 * 265.00275 * 10 8 7 36 36 H 1.07993 * 119.92384 * 359.97438 * 12 11 10 37 37 H 1.08000 * 120.07612 * 180.27216 * 13 12 11 38 38 H 0.96998 * 119.99831 * 180.02562 * 18 17 15 39 39 H 1.07996 * 120.08618 * 180.02562 * 23 14 13 40 40 H 1.08004 * 119.91955 * 179.97438 * 24 23 14 41 41 H 1.09004 * 109.47241 * 179.97438 * 25 8 7 42 42 H 1.08993 * 109.47373 * 59.99749 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7429 2.4015 -1.3074 6 6 2.0865 3.8924 -1.3071 7 6 3.6015 4.0666 -1.1811 8 6 4.0807 3.4325 0.1262 9 1 3.5878 3.9189 0.9681 10 7 5.5312 3.5987 0.2466 11 6 6.0540 4.7701 0.7783 12 6 5.1948 5.7892 1.1917 13 6 5.7010 6.9397 1.7199 14 6 7.0954 7.1031 1.8371 15 6 7.6268 8.2939 2.3771 16 1 8.6291 8.6033 2.1199 17 6 6.8555 9.0733 3.2454 18 7 5.8077 8.5548 3.8344 19 14 7.3206 10.8542 3.5645 20 1 8.5368 11.1955 2.7840 21 1 6.2021 11.7394 3.1515 22 1 7.5927 11.0429 5.0120 23 6 7.9569 6.0724 1.4125 24 6 7.4365 4.9252 0.8911 25 6 3.7370 1.9416 0.1260 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.6636 2.2778 -1.3970 30 1 2.2355 1.9149 -2.1491 31 1 1.5936 4.3788 -0.4653 32 1 1.7455 4.3441 -2.2386 33 1 4.0943 3.5803 -2.0228 34 1 3.8463 5.1287 -1.1814 35 1 6.1264 2.8906 -0.0451 36 1 4.1262 5.6646 1.0968 37 1 5.0347 7.7258 2.0435 38 1 5.2726 9.0954 4.4362 39 1 9.0268 6.1907 1.4998 40 1 8.0957 4.1343 0.5648 41 1 4.0788 1.4897 1.0572 42 1 4.2299 1.4553 -0.7158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921566369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:48 Heat of formation + Delta-G solvation = 0.662936 kcal Electronic energy + Delta-G solvation = -20628.966133 eV Core-core repulsion = 17698.591791 eV Total energy + Delta-G solvation = -2930.374343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.07302 -37.41778 -34.60307 -32.87326 -30.92671 -30.05961 -29.43171 -28.99408 -27.63818 -24.36366 -22.81919 -22.32405 -21.08234 -20.13108 -19.56196 -17.20310 -16.67184 -16.20113 -15.39088 -14.95478 -14.79691 -14.55159 -14.25260 -13.82915 -13.80876 -13.61937 -13.20469 -12.84960 -12.63705 -12.39961 -12.12692 -12.02425 -11.83345 -11.63924 -11.32826 -11.13597 -11.06102 -10.96119 -10.69950 -10.63457 -10.47677 -10.29025 -9.83525 -9.67939 -9.27105 -9.18312 -8.53200 -7.88403 -7.47845 -6.63459 -6.37531 -4.02160 1.47824 2.37889 2.91054 3.11237 3.15854 3.21298 3.35820 4.06144 4.13404 4.49862 4.75323 4.77635 4.86147 4.87583 4.98825 5.09043 5.15618 5.30832 5.36530 5.41093 5.45775 5.59503 5.82664 5.84727 5.92122 5.94622 6.04594 6.18585 6.27795 6.30548 6.40627 6.51548 6.94924 6.96236 7.21479 7.36901 7.57437 7.70436 7.85606 8.16615 8.30747 8.50981 8.71837 8.81715 9.07360 9.16580 10.38158 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029196 B = 0.003079 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.797161 B = 9091.829887 C = 9417.230075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.270 6.270 3 C -0.043 4.043 4 H 0.089 0.911 5 C -0.112 4.112 6 C -0.115 4.115 7 C -0.136 4.136 8 C 0.172 3.828 9 H 0.073 0.927 10 N -0.756 5.756 11 C 0.094 3.906 12 C -0.164 4.164 13 C -0.125 4.125 14 C 0.074 3.926 15 C -0.466 4.466 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.808 5.808 19 Si 0.901 3.099 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.277 1.277 23 C -0.187 4.187 24 C -0.159 4.159 25 C -0.104 4.104 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.383 0.617 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.275 0.725 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.646 -11.590 -7.857 17.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.041 6.041 3 C -0.172 4.172 4 H 0.107 0.893 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.175 4.175 8 C 0.063 3.937 9 H 0.091 0.909 10 N -0.390 5.390 11 C -0.003 4.003 12 C -0.186 4.186 13 C -0.145 4.145 14 C 0.071 3.929 15 C -0.498 4.498 16 H 0.091 0.909 17 C -0.141 4.141 18 N -0.435 5.435 19 Si 0.726 3.274 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.203 1.203 23 C -0.207 4.207 24 C -0.181 4.181 25 C -0.144 4.144 26 H 0.095 0.905 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.216 0.784 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.331 -12.392 -7.622 17.844 hybrid contribution -0.539 1.526 0.202 1.631 sum -10.870 -10.866 -7.420 17.068 Atomic orbital electron populations 1.23373 0.94464 1.06210 1.04912 1.86870 1.07122 1.12194 1.97946 1.23143 1.00168 0.92540 1.01365 0.89307 1.21872 1.00467 0.96410 0.96384 1.21539 0.96944 0.94961 1.02072 1.22106 0.94356 1.02350 0.98726 1.20497 0.83410 0.92845 0.96942 0.90875 1.43885 1.03463 1.18156 1.73449 1.17329 0.91884 0.87796 1.03261 1.20112 0.96505 0.95353 1.06616 1.20933 0.95936 0.96798 1.00794 1.17497 0.91501 0.92167 0.91734 1.19396 1.00865 1.05259 1.24237 0.90948 1.25791 0.94340 0.99721 0.94202 1.69865 1.15171 1.36510 1.21959 0.86380 0.79555 0.82944 0.78471 1.18644 1.19986 1.20295 1.20546 0.97749 0.94255 1.08164 1.19809 0.92176 0.98609 1.07499 1.21590 0.92047 0.97418 1.03315 0.90492 0.88337 0.90554 0.92181 0.90762 0.91818 0.91623 0.92089 0.90924 0.78407 0.89339 0.86452 0.91425 0.89102 0.89633 0.90617 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.45 101.05 1.06 0.14 16 2 S -0.27 -2.87 21.79 -107.50 -2.34 -5.22 16 3 C -0.04 -0.46 2.65 -26.73 -0.07 -0.53 16 4 H 0.09 0.96 8.14 -51.92 -0.42 0.53 16 5 C -0.11 -1.07 5.11 -26.73 -0.14 -1.21 16 6 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 7 C -0.14 -1.78 5.41 -26.73 -0.14 -1.93 16 8 C 0.17 2.45 2.14 -67.93 -0.15 2.30 16 9 H 0.07 1.17 6.46 -51.93 -0.34 0.83 16 10 N -0.76 -12.79 5.22 -52.03 -0.27 -13.06 16 11 C 0.09 2.01 6.65 -83.69 -0.56 1.46 16 12 C -0.16 -3.78 8.73 -39.77 -0.35 -4.12 16 13 C -0.12 -3.25 8.64 -39.27 -0.34 -3.59 16 14 C 0.07 2.00 5.57 -106.80 -0.60 1.40 16 15 C -0.47 -12.71 9.03 -37.87 -0.34 -13.05 16 16 H 0.07 1.91 7.91 -52.48 -0.41 1.50 16 17 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 18 N -0.81 -21.45 10.96 55.54 0.61 -20.85 16 19 Si 0.90 19.27 29.60 -169.99 -5.03 14.24 16 20 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 23 C -0.19 -4.64 9.74 -39.26 -0.38 -5.02 16 24 C -0.16 -3.56 9.82 -39.77 -0.39 -3.95 16 25 C -0.10 -1.25 4.68 -26.73 -0.13 -1.38 16 26 H 0.08 0.52 7.14 -51.92 -0.37 0.14 16 27 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.50 6.92 -51.93 -0.36 0.14 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.12 7.63 -51.93 -0.40 0.72 16 35 H 0.38 5.88 8.60 -40.82 -0.35 5.53 16 36 H 0.09 1.85 6.03 -52.49 -0.32 1.54 16 37 H 0.12 3.18 6.16 -52.49 -0.32 2.86 16 38 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 39 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 40 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 343.10 15.07 5.17 5.17 Total: -1.00 -27.85 343.10 -11.28 -39.14 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.65 Total: 9.57 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -2.77 Total: -29.00 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.34 Total: -33.91 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Atomic # 16 Polarization: -2.87 SS G_CDS: -2.34 Total: -5.22 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.85 -11.28 -39.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921566369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.799 kcal (2) G-P(sol) polarization free energy of solvation -27.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds