Wall clock time and date at job start Tue Mar 31 2020 07:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81392 * 103.00211 * 2 1 4 4 H 1.09003 * 109.47202 * 55.00029 * 3 2 1 5 5 C 1.53007 * 109.47053 * 295.00094 * 3 2 1 6 6 C 1.52998 * 109.47007 * 179.97438 * 5 3 2 7 7 C 1.53011 * 109.47144 * 60.00024 * 6 5 3 8 8 C 1.53000 * 109.46883 * 299.99931 * 7 6 5 9 9 H 1.09003 * 109.47162 * 299.99687 * 8 7 6 10 10 N 1.46498 * 109.46920 * 179.97438 * 8 7 6 11 11 C 1.38858 * 119.99859 * 85.00036 * 10 8 7 12 12 C 1.39567 * 119.84182 * 359.72740 * 11 10 8 13 13 C 1.36343 * 120.15516 * 179.71888 * 12 11 10 14 14 C 1.40880 * 119.84067 * 0.55524 * 13 12 11 15 15 C 1.41134 * 120.15872 * 179.70093 * 14 13 12 16 16 H 1.08004 * 120.00103 * 204.62132 * 15 14 13 17 17 C 1.39868 * 119.99953 * 24.62087 * 15 14 13 18 18 N 1.30902 * 120.00024 * 17.96511 * 17 15 14 19 19 Si 1.86806 * 119.99938 * 197.96894 * 17 15 14 20 20 H 1.48495 * 109.46884 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46825 * 119.99746 * 19 17 15 22 22 H 1.48493 * 109.46971 * 239.99758 * 19 17 15 23 23 C 1.40888 * 119.68981 * 359.71464 * 14 13 12 24 24 C 1.36337 * 119.83371 * 0.02562 * 23 14 13 25 25 C 1.52998 * 109.47175 * 60.00088 * 8 7 6 26 26 H 1.09000 * 109.46908 * 60.00093 * 1 2 3 27 27 H 1.09002 * 109.47093 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46774 * 299.99687 * 1 2 3 29 29 H 1.08998 * 109.47160 * 60.00070 * 5 3 2 30 30 H 1.08993 * 109.46686 * 299.99619 * 5 3 2 31 31 H 1.09003 * 109.47403 * 300.00030 * 6 5 3 32 32 H 1.08997 * 109.47476 * 179.97438 * 6 5 3 33 33 H 1.08993 * 109.46982 * 59.99765 * 7 6 5 34 34 H 1.08996 * 109.47091 * 179.97438 * 7 6 5 35 35 H 0.96999 * 120.00240 * 265.00275 * 10 8 7 36 36 H 1.07993 * 119.92384 * 359.97438 * 12 11 10 37 37 H 1.08000 * 120.07612 * 180.27216 * 13 12 11 38 38 H 0.96998 * 119.99831 * 180.02562 * 18 17 15 39 39 H 1.07996 * 120.08618 * 180.02562 * 23 14 13 40 40 H 1.08004 * 119.91955 * 179.97438 * 24 23 14 41 41 H 1.09004 * 109.47241 * 179.97438 * 25 8 7 42 42 H 1.08993 * 109.47373 * 59.99749 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7429 2.4015 -1.3074 6 6 2.0865 3.8924 -1.3071 7 6 3.6015 4.0666 -1.1811 8 6 4.0807 3.4325 0.1262 9 1 3.5878 3.9189 0.9681 10 7 5.5312 3.5987 0.2466 11 6 6.0540 4.7701 0.7783 12 6 5.1948 5.7892 1.1917 13 6 5.7010 6.9397 1.7199 14 6 7.0954 7.1031 1.8371 15 6 7.6268 8.2939 2.3771 16 1 8.6291 8.6033 2.1199 17 6 6.8555 9.0733 3.2454 18 7 5.8077 8.5548 3.8344 19 14 7.3206 10.8542 3.5645 20 1 8.5368 11.1955 2.7840 21 1 6.2021 11.7394 3.1515 22 1 7.5927 11.0429 5.0120 23 6 7.9569 6.0724 1.4125 24 6 7.4365 4.9252 0.8911 25 6 3.7370 1.9416 0.1260 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.6636 2.2778 -1.3970 30 1 2.2355 1.9149 -2.1491 31 1 1.5936 4.3788 -0.4653 32 1 1.7455 4.3441 -2.2386 33 1 4.0943 3.5803 -2.0228 34 1 3.8463 5.1287 -1.1814 35 1 6.1264 2.8906 -0.0451 36 1 4.1262 5.6646 1.0968 37 1 5.0347 7.7258 2.0435 38 1 5.2726 9.0954 4.4362 39 1 9.0268 6.1907 1.4998 40 1 8.0957 4.1343 0.5648 41 1 4.0788 1.4897 1.0572 42 1 4.2299 1.4553 -0.7158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921566369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:47 Heat of formation + Delta-G solvation = -12.256491 kcal Electronic energy + Delta-G solvation = -20629.526362 eV Core-core repulsion = 17698.591791 eV Total energy + Delta-G solvation = -2930.934571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.37542 -38.99456 -36.20979 -34.57327 -31.90326 -31.47741 -31.25419 -29.86271 -29.06367 -26.14501 -23.89378 -23.58806 -22.73416 -21.65682 -20.80139 -19.14842 -17.83631 -17.63706 -16.77537 -16.40496 -16.05650 -15.61449 -15.37738 -15.25993 -14.78530 -14.57405 -14.34596 -14.25250 -14.06375 -13.79864 -13.64452 -13.42665 -13.24822 -12.80355 -12.75215 -12.68282 -12.50801 -12.29644 -12.18317 -11.74451 -11.60476 -11.58086 -11.38081 -11.11946 -11.01316 -10.68908 -10.24927 -9.38674 -8.68878 -8.54467 -8.14747 -5.99680 0.71130 1.11133 1.19728 1.40171 1.54365 1.58538 1.65601 2.27776 2.82339 2.85498 3.63390 3.80031 3.86527 3.92982 4.15618 4.18589 4.32566 4.35575 4.36699 4.40327 4.42796 4.52276 4.53095 4.62676 4.87725 4.90489 5.02544 5.04050 5.07038 5.07920 5.17846 5.23290 5.29444 5.34656 5.45061 5.47278 5.71450 5.82569 5.98016 6.20146 6.40789 6.68603 6.88971 7.09582 7.16218 7.33253 8.48942 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029196 B = 0.003079 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.797161 B = 9091.829887 C = 9417.230075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.307 6.307 3 C -0.037 4.037 4 H 0.086 0.914 5 C -0.104 4.104 6 C -0.110 4.110 7 C -0.130 4.130 8 C 0.170 3.830 9 H 0.056 0.944 10 N -0.747 5.747 11 C 0.117 3.883 12 C -0.172 4.172 13 C -0.143 4.143 14 C 0.034 3.966 15 C -0.505 4.505 16 H 0.066 0.934 17 C 0.032 3.968 18 N -0.841 5.841 19 Si 0.975 3.025 20 H -0.261 1.261 21 H -0.266 1.266 22 H -0.269 1.269 23 C -0.197 4.197 24 C -0.167 4.167 25 C -0.094 4.094 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.395 0.605 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.282 0.718 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.066 0.934 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.948 -12.841 -8.957 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.079 6.079 3 C -0.166 4.166 4 H 0.104 0.896 5 C -0.143 4.143 6 C -0.150 4.150 7 C -0.170 4.170 8 C 0.062 3.938 9 H 0.074 0.926 10 N -0.380 5.380 11 C 0.017 3.983 12 C -0.194 4.194 13 C -0.163 4.163 14 C 0.032 3.968 15 C -0.537 4.537 16 H 0.084 0.916 17 C -0.180 4.180 18 N -0.470 5.470 19 Si 0.797 3.203 20 H -0.185 1.185 21 H -0.191 1.191 22 H -0.194 1.194 23 C -0.217 4.217 24 C -0.189 4.189 25 C -0.133 4.133 26 H 0.108 0.892 27 H 0.129 0.871 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.230 0.770 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.085 0.915 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.648 -13.691 -8.745 19.990 hybrid contribution -0.206 1.693 0.471 1.769 sum -11.854 -11.998 -8.274 18.787 Atomic orbital electron populations 1.23448 0.91296 1.07372 1.05834 1.87003 1.10667 1.12139 1.98055 1.23042 0.98836 0.92702 1.01998 0.89566 1.21824 1.01650 0.95173 0.95665 1.21503 0.94705 0.96014 1.02775 1.22006 0.96526 1.00470 0.97960 1.20632 0.81462 0.94662 0.97034 0.92591 1.43955 1.05093 1.16806 1.72149 1.17412 0.91590 0.88467 1.00817 1.20246 0.97671 0.94965 1.06478 1.20861 0.95582 0.97623 1.02266 1.17816 0.92340 0.93241 0.93446 1.19603 1.01298 1.06777 1.25972 0.91558 1.26601 0.94156 1.03811 0.93453 1.69925 1.16253 1.38160 1.22623 0.85265 0.79289 0.77205 0.78522 1.18506 1.19092 1.19388 1.20751 0.97959 0.94763 1.08226 1.20102 0.93105 0.98615 1.07061 1.21443 0.93500 0.95214 1.03144 0.89197 0.87083 0.89988 0.90311 0.90515 0.92029 0.90187 0.91433 0.93503 0.77020 0.87712 0.88379 0.90809 0.88663 0.86569 0.91544 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.45 113.37 1.19 -0.16 16 2 S -0.31 -5.86 21.79 -56.49 -1.23 -7.09 16 3 C -0.04 -0.70 2.65 30.60 0.08 -0.62 16 4 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 5 C -0.10 -1.67 5.11 30.60 0.16 -1.51 16 6 C -0.11 -2.06 5.92 30.60 0.18 -1.88 16 7 C -0.13 -3.21 5.41 30.60 0.17 -3.05 16 8 C 0.17 4.61 2.14 44.99 0.10 4.70 16 9 H 0.06 1.75 6.46 -2.39 -0.02 1.73 16 10 N -0.75 -24.10 5.22 -318.53 -1.66 -25.76 16 11 C 0.12 4.91 6.65 38.67 0.26 5.17 16 12 C -0.17 -8.00 8.73 22.15 0.19 -7.81 16 13 C -0.14 -7.76 8.64 22.47 0.19 -7.57 16 14 C 0.03 1.93 5.57 -21.27 -0.12 1.81 16 15 C -0.51 -28.69 9.03 23.38 0.21 -28.48 16 16 H 0.07 3.67 7.91 -2.91 -0.02 3.65 16 17 C 0.03 1.68 5.13 85.23 0.44 2.11 16 18 N -0.84 -46.22 10.96 21.82 0.24 -45.98 16 19 Si 0.98 40.45 29.60 68.60 2.03 42.48 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 22 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 23 C -0.20 -9.96 9.74 22.48 0.22 -9.74 16 24 C -0.17 -7.34 9.82 22.15 0.22 -7.12 16 25 C -0.09 -2.08 4.68 30.59 0.14 -1.94 16 26 H 0.09 0.87 7.14 -2.39 -0.02 0.86 16 27 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 1.02 6.92 -2.39 -0.02 1.00 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.40 7.63 -2.39 -0.02 1.38 16 35 H 0.40 11.17 8.60 -92.71 -0.80 10.38 16 36 H 0.10 4.44 6.03 -2.91 -0.02 4.42 16 37 H 0.10 5.60 6.16 -2.91 -0.02 5.59 16 38 H 0.28 14.03 8.30 -92.71 -0.77 13.27 16 39 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 40 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -62.10 343.10 3.20 -58.90 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.21 Total: 33.52 kcal Atomic # 6 Polarization: -59.69 SS G_CDS: 3.62 Total: -56.07 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -1.42 Total: -71.74 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -1.23 Total: -7.09 kcal Total: -62.10 3.20 -58.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921566369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.646 kcal (2) G-P(sol) polarization free energy of solvation -62.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds