Wall clock time and date at job start Tue Mar 31 2020 07:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81403 * 102.99791 * 2 1 4 4 C 1.53782 * 113.61312 * 174.99832 * 3 2 1 5 5 C 1.53780 * 87.07949 * 89.20204 * 4 3 2 6 6 N 1.46893 * 113.61546 * 139.98242 * 5 4 3 7 7 C 1.46903 * 111.00409 * 154.99813 * 6 5 4 8 8 H 1.09006 * 109.46760 * 35.00053 * 7 6 5 9 9 C 1.52992 * 109.47282 * 154.99837 * 7 6 5 10 10 C 1.50700 * 109.47257 * 295.00076 * 9 7 6 11 11 H 1.07999 * 119.99988 * 359.97438 * 10 9 7 12 12 C 1.37885 * 120.00047 * 180.02562 * 10 9 7 13 13 N 1.31518 * 119.99792 * 359.72305 * 12 10 9 14 14 Si 1.86795 * 120.00009 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47088 * 89.99795 * 14 12 10 16 16 H 1.48495 * 109.47293 * 209.99997 * 14 12 10 17 17 H 1.48507 * 109.47015 * 329.99955 * 14 12 10 18 18 C 1.50699 * 109.47100 * 275.00113 * 7 6 5 19 19 C 1.38235 * 119.99871 * 319.72355 * 18 7 6 20 20 C 1.38236 * 119.99561 * 179.78870 * 19 18 7 21 21 C 1.38238 * 120.00362 * 0.44045 * 20 19 18 22 22 C 1.38231 * 119.99957 * 359.81377 * 21 20 19 23 23 C 1.38237 * 119.99957 * 139.99649 * 18 7 6 24 24 C 1.53777 * 87.08476 * 25.43123 * 5 4 3 25 25 H 1.09007 * 109.47291 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47626 * 299.99779 * 1 2 3 27 27 H 1.09000 * 109.47600 * 60.00352 * 1 2 3 28 28 H 1.09003 * 112.84808 * 43.80463 * 3 2 1 29 29 H 1.09000 * 113.61249 * 334.65555 * 4 3 2 30 30 H 1.08993 * 113.61348 * 203.74873 * 4 3 2 31 31 H 1.09005 * 113.61205 * 270.79769 * 5 4 3 32 32 H 1.00901 * 111.00121 * 278.95322 * 6 5 4 33 33 H 1.09004 * 109.47330 * 175.00099 * 9 7 6 34 34 H 1.08997 * 109.47279 * 55.00586 * 9 7 6 35 35 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 36 36 H 1.07994 * 120.00023 * 359.97438 * 19 18 7 37 37 H 1.08003 * 120.00112 * 180.27263 * 20 19 18 38 38 H 1.08003 * 119.99861 * 179.83132 * 21 20 19 39 39 H 1.07993 * 120.00141 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.99879 * 359.97438 * 23 18 7 41 41 H 1.09001 * 113.61406 * 89.11038 * 24 5 4 42 42 H 1.08999 * 113.61993 * 220.02303 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7282 2.0520 0.1228 5 6 3.7859 1.9864 -1.4125 6 7 4.6637 3.0000 -2.0122 7 6 5.1513 2.5627 -3.3272 8 1 4.3735 1.9883 -3.8305 9 6 5.5081 3.7874 -4.1719 10 6 4.2603 4.5839 -4.4541 11 1 3.3079 4.2498 -4.0698 12 6 4.3343 5.7387 -5.2039 13 7 5.4948 6.1479 -5.6682 14 14 2.7878 6.7263 -5.5531 15 1 2.5897 7.7321 -4.4787 16 1 2.9268 7.4184 -6.8595 17 1 1.6173 5.8135 -5.5986 18 6 6.3752 1.7020 -3.1483 19 6 7.3260 2.0402 -2.2036 20 6 8.4466 1.2482 -2.0365 21 6 8.6208 0.1229 -2.8203 22 6 7.6727 -0.2124 -3.7687 23 6 6.5499 0.5772 -3.9328 24 6 2.3003 2.3836 -1.4069 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6108 2.3430 0.6953 29 1 4.2845 1.2543 0.6151 30 1 3.9547 3.0388 0.5265 31 1 3.9698 0.9844 -1.8000 32 1 4.1948 3.8910 -2.0785 33 1 5.9525 3.4629 -5.1129 34 1 6.2205 4.4084 -3.6289 35 1 5.5468 6.9601 -6.1960 36 1 7.1919 2.9216 -1.5940 37 1 9.1873 1.5099 -1.2954 38 1 9.4977 -0.4943 -2.6916 39 1 7.8090 -1.0912 -4.3813 40 1 5.8090 0.3152 -4.6736 41 1 2.1363 3.4611 -1.4213 42 1 1.7037 1.8536 -2.1494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925601658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:45 Heat of formation + Delta-G solvation = 35.766747 kcal Electronic energy + Delta-G solvation = -20955.226115 eV Core-core repulsion = 18026.373988 eV Total energy + Delta-G solvation = -2928.852127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.24975 -38.31489 -35.07606 -32.52015 -30.43141 -30.10280 -29.08693 -28.44440 -25.49772 -24.89158 -23.34772 -22.07705 -21.82344 -19.78439 -19.33535 -16.61836 -16.20029 -16.05461 -15.64048 -15.25193 -14.70681 -14.50665 -14.41730 -13.77970 -13.63886 -13.26090 -12.99613 -12.86498 -12.76488 -12.44816 -12.26779 -12.13897 -12.02896 -11.54806 -11.12393 -10.99783 -10.88337 -10.71696 -10.59464 -10.47136 -10.24608 -10.19586 -9.81689 -9.54899 -9.19147 -8.45784 -8.37200 -8.03252 -7.78507 -7.63031 -6.07229 -4.11273 1.65219 1.91163 1.96603 2.53710 3.25359 3.32975 3.34335 4.32596 4.39997 4.54395 4.65649 4.79664 4.99878 5.01921 5.14107 5.26814 5.33034 5.38127 5.45294 5.54973 5.55249 5.62849 5.72480 5.90724 5.96375 6.06934 6.09478 6.14020 6.22391 6.35034 6.39381 6.49070 6.60788 6.74726 6.96431 7.02441 7.25799 7.48161 7.57237 7.59219 7.91432 7.99781 8.20951 8.29747 8.94536 9.53054 11.03317 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.008926 B = 0.006348 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.030916 B = 4409.584110 C = 6940.494661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.236 6.236 3 C -0.088 4.088 4 C -0.102 4.102 5 C 0.079 3.921 6 N -0.669 5.669 7 C 0.128 3.872 8 H 0.042 0.958 9 C 0.028 3.972 10 C -0.525 4.525 11 H 0.053 0.947 12 C 0.063 3.937 13 N -0.888 5.888 14 Si 0.889 3.111 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.053 4.053 19 C -0.087 4.087 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.128 4.128 23 C -0.124 4.124 24 C -0.156 4.156 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.360 0.640 33 H 0.023 0.977 34 H 0.028 0.972 35 H 0.261 0.739 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.761 -10.907 10.328 15.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.010 6.010 3 C -0.217 4.217 4 C -0.141 4.141 5 C -0.033 4.033 6 N -0.301 5.301 7 C 0.018 3.982 8 H 0.060 0.940 9 C -0.009 4.009 10 C -0.563 4.563 11 H 0.072 0.928 12 C -0.139 4.139 13 N -0.526 5.526 14 Si 0.717 3.283 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.054 4.054 19 C -0.105 4.105 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.146 4.146 23 C -0.142 4.142 24 C -0.198 4.198 25 H 0.116 0.884 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.182 0.818 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.145 0.855 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.109 0.891 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.444 -11.830 10.549 16.038 hybrid contribution -2.539 1.735 -0.837 3.187 sum -4.982 -10.095 9.712 14.868 Atomic orbital electron populations 1.23365 0.95002 1.06096 1.04845 1.86686 1.06474 1.10202 1.97614 1.24262 1.02270 0.93563 1.01626 1.22961 0.90744 1.02383 0.98029 1.22961 0.89231 0.96898 0.94161 1.60355 1.40432 1.05476 1.23827 1.20650 0.91756 0.96809 0.88962 0.94028 1.19255 0.97233 0.90217 0.94212 1.21123 0.93712 1.08050 1.33442 0.92849 1.24972 0.95786 0.97447 0.95725 1.69965 1.23750 1.23410 1.35515 0.86650 0.83564 0.80329 0.77787 1.20614 1.21207 1.20012 1.20207 0.96790 0.93977 0.94399 1.21029 0.92659 0.99246 0.97576 1.21116 0.98080 0.95783 0.99898 1.20964 0.99144 0.97965 0.97529 1.20964 0.94932 0.99752 0.98922 1.21043 0.98098 0.95310 0.99758 1.23962 1.00156 1.01155 0.94506 0.88364 0.90761 0.90500 0.89271 0.91005 0.88526 0.88708 0.81750 0.95910 0.95367 0.92881 0.85460 0.86951 0.87157 0.86993 0.86746 0.89083 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.76 101.05 1.09 -0.06 16 2 S -0.24 -2.93 21.91 -107.50 -2.36 -5.29 16 3 C -0.09 -1.09 4.43 -25.92 -0.11 -1.20 16 4 C -0.10 -1.35 7.49 -25.92 -0.19 -1.54 16 5 C 0.08 1.21 3.65 -66.91 -0.24 0.97 16 6 N -0.67 -11.92 5.68 -100.11 -0.57 -12.49 16 7 C 0.13 2.56 2.04 -68.87 -0.14 2.41 16 8 H 0.04 0.86 7.70 -51.93 -0.40 0.46 16 9 C 0.03 0.69 4.55 -27.89 -0.13 0.57 16 10 C -0.53 -13.78 8.12 -34.44 -0.28 -14.06 16 11 H 0.05 1.35 7.49 -52.49 -0.39 0.96 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 14 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 C -0.05 -0.99 4.77 -104.62 -0.50 -1.49 16 19 C -0.09 -1.54 9.32 -39.58 -0.37 -1.91 16 20 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 21 C -0.14 -2.03 10.05 -39.58 -0.40 -2.42 16 22 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 23 C -0.12 -2.13 9.67 -39.58 -0.38 -2.51 16 24 C -0.16 -2.19 7.30 -25.92 -0.19 -2.38 16 25 H 0.10 0.78 8.14 -51.92 -0.42 0.35 16 26 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 27 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 30 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.09 1.58 7.80 -51.93 -0.41 1.17 16 32 H 0.36 6.88 6.67 -39.29 -0.26 6.62 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.13 2.28 7.73 -52.49 -0.41 1.88 16 37 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.86 8.04 -52.49 -0.42 1.44 16 41 H 0.09 1.29 7.82 -51.93 -0.41 0.89 16 42 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -28.20 358.37 -11.45 -39.65 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -6.90 Total: 8.78 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -2.74 Total: -26.78 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.17 Total: -37.57 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -2.36 Total: -5.29 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.20 -11.45 -39.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925601658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.419 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds