Wall clock time and date at job start Tue Mar 31 2020 07:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81403 * 102.99791 * 2 1 4 4 C 1.53782 * 113.61312 * 174.99832 * 3 2 1 5 5 C 1.53780 * 87.07949 * 89.20204 * 4 3 2 6 6 N 1.46893 * 113.61546 * 139.98242 * 5 4 3 7 7 C 1.46903 * 111.00409 * 154.99813 * 6 5 4 8 8 H 1.09006 * 109.46760 * 35.00053 * 7 6 5 9 9 C 1.52992 * 109.47282 * 154.99837 * 7 6 5 10 10 C 1.50700 * 109.47257 * 295.00076 * 9 7 6 11 11 H 1.07999 * 119.99988 * 359.97438 * 10 9 7 12 12 C 1.37885 * 120.00047 * 180.02562 * 10 9 7 13 13 N 1.31518 * 119.99792 * 359.72305 * 12 10 9 14 14 Si 1.86795 * 120.00009 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47088 * 89.99795 * 14 12 10 16 16 H 1.48495 * 109.47293 * 209.99997 * 14 12 10 17 17 H 1.48507 * 109.47015 * 329.99955 * 14 12 10 18 18 C 1.50699 * 109.47100 * 275.00113 * 7 6 5 19 19 C 1.38235 * 119.99871 * 319.72355 * 18 7 6 20 20 C 1.38236 * 119.99561 * 179.78870 * 19 18 7 21 21 C 1.38238 * 120.00362 * 0.44045 * 20 19 18 22 22 C 1.38231 * 119.99957 * 359.81377 * 21 20 19 23 23 C 1.38237 * 119.99957 * 139.99649 * 18 7 6 24 24 C 1.53777 * 87.08476 * 25.43123 * 5 4 3 25 25 H 1.09007 * 109.47291 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47626 * 299.99779 * 1 2 3 27 27 H 1.09000 * 109.47600 * 60.00352 * 1 2 3 28 28 H 1.09003 * 112.84808 * 43.80463 * 3 2 1 29 29 H 1.09000 * 113.61249 * 334.65555 * 4 3 2 30 30 H 1.08993 * 113.61348 * 203.74873 * 4 3 2 31 31 H 1.09005 * 113.61205 * 270.79769 * 5 4 3 32 32 H 1.00901 * 111.00121 * 278.95322 * 6 5 4 33 33 H 1.09004 * 109.47330 * 175.00099 * 9 7 6 34 34 H 1.08997 * 109.47279 * 55.00586 * 9 7 6 35 35 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 36 36 H 1.07994 * 120.00023 * 359.97438 * 19 18 7 37 37 H 1.08003 * 120.00112 * 180.27263 * 20 19 18 38 38 H 1.08003 * 119.99861 * 179.83132 * 21 20 19 39 39 H 1.07993 * 120.00141 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.99879 * 359.97438 * 23 18 7 41 41 H 1.09001 * 113.61406 * 89.11038 * 24 5 4 42 42 H 1.08999 * 113.61993 * 220.02303 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7282 2.0520 0.1228 5 6 3.7859 1.9864 -1.4125 6 7 4.6637 3.0000 -2.0122 7 6 5.1513 2.5627 -3.3272 8 1 4.3735 1.9883 -3.8305 9 6 5.5081 3.7874 -4.1719 10 6 4.2603 4.5839 -4.4541 11 1 3.3079 4.2498 -4.0698 12 6 4.3343 5.7387 -5.2039 13 7 5.4948 6.1479 -5.6682 14 14 2.7878 6.7263 -5.5531 15 1 2.5897 7.7321 -4.4787 16 1 2.9268 7.4184 -6.8595 17 1 1.6173 5.8135 -5.5986 18 6 6.3752 1.7020 -3.1483 19 6 7.3260 2.0402 -2.2036 20 6 8.4466 1.2482 -2.0365 21 6 8.6208 0.1229 -2.8203 22 6 7.6727 -0.2124 -3.7687 23 6 6.5499 0.5772 -3.9328 24 6 2.3003 2.3836 -1.4069 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6108 2.3430 0.6953 29 1 4.2845 1.2543 0.6151 30 1 3.9547 3.0388 0.5265 31 1 3.9698 0.9844 -1.8000 32 1 4.1948 3.8910 -2.0785 33 1 5.9525 3.4629 -5.1129 34 1 6.2205 4.4084 -3.6289 35 1 5.5468 6.9601 -6.1960 36 1 7.1919 2.9216 -1.5940 37 1 9.1873 1.5099 -1.2954 38 1 9.4977 -0.4943 -2.6916 39 1 7.8090 -1.0912 -4.3813 40 1 5.8090 0.3152 -4.6736 41 1 2.1363 3.4611 -1.4213 42 1 1.7037 1.8536 -2.1494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925601658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:45 Heat of formation + Delta-G solvation = 22.174810 kcal Electronic energy + Delta-G solvation = -20955.815506 eV Core-core repulsion = 18026.373988 eV Total energy + Delta-G solvation = -2929.441518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57210 -39.53119 -36.66213 -34.49602 -31.72369 -31.40470 -30.33765 -29.77929 -26.61907 -26.61081 -24.63907 -23.68280 -23.18865 -21.14445 -20.66014 -18.56833 -17.50060 -17.26739 -16.86142 -16.72998 -16.25528 -16.01555 -15.60171 -14.87799 -14.70436 -14.52259 -14.21418 -14.18109 -14.03583 -13.77480 -13.64419 -13.46566 -13.41818 -13.12418 -12.91629 -12.57792 -12.43889 -12.11610 -12.04924 -11.85850 -11.63213 -11.58406 -11.26022 -11.12624 -10.76493 -10.57593 -9.66951 -9.41472 -9.17305 -8.66215 -8.18695 -6.30010 0.61080 0.67334 0.74536 1.39904 1.40452 1.50596 1.65426 2.39819 3.03202 3.13103 3.38970 3.50995 3.54933 3.94773 4.06792 4.15439 4.23692 4.31175 4.32510 4.35064 4.42468 4.50455 4.62692 4.79033 4.80472 4.81443 4.84143 4.87721 4.90009 5.04031 5.07091 5.15514 5.25136 5.32135 5.44879 5.55063 5.69517 5.74416 5.82240 5.91619 6.18143 6.28624 6.43716 6.67321 6.84640 7.38885 8.92687 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.008926 B = 0.006348 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.030916 B = 4409.584110 C = 6940.494661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.277 6.277 3 C -0.070 4.070 4 C -0.093 4.093 5 C 0.074 3.926 6 N -0.665 5.665 7 C 0.144 3.856 8 H 0.028 0.972 9 C 0.041 3.959 10 C -0.531 4.531 11 H 0.062 0.938 12 C 0.007 3.993 13 N -0.929 5.929 14 Si 0.959 3.041 15 H -0.271 1.271 16 H -0.287 1.287 17 H -0.265 1.265 18 C -0.078 4.078 19 C -0.104 4.104 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.126 4.126 23 C -0.141 4.141 24 C -0.153 4.153 25 H 0.113 0.887 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.350 0.650 33 H -0.013 1.013 34 H -0.001 1.001 35 H 0.262 0.738 36 H 0.116 0.884 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.655 -11.991 11.578 17.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.051 6.051 3 C -0.199 4.199 4 C -0.132 4.132 5 C -0.037 4.037 6 N -0.297 5.297 7 C 0.035 3.965 8 H 0.046 0.954 9 C 0.004 3.996 10 C -0.569 4.569 11 H 0.080 0.920 12 C -0.191 4.191 13 N -0.569 5.569 14 Si 0.784 3.216 15 H -0.196 1.196 16 H -0.213 1.213 17 H -0.189 1.189 18 C -0.079 4.079 19 C -0.122 4.122 20 C -0.149 4.149 21 C -0.150 4.150 22 C -0.144 4.144 23 C -0.160 4.160 24 C -0.195 4.195 25 H 0.131 0.869 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.172 0.828 33 H 0.005 0.995 34 H 0.017 0.983 35 H 0.071 0.929 36 H 0.134 0.866 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.132 0.868 41 H 0.109 0.891 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.349 -12.937 11.818 17.840 hybrid contribution -2.209 1.981 -1.229 3.211 sum -5.558 -10.957 10.590 16.220 Atomic orbital electron populations 1.23429 0.91711 1.07371 1.05652 1.86853 1.10164 1.10420 1.97645 1.24108 1.01697 0.93591 1.00505 1.22884 0.91686 1.02759 0.95886 1.22988 0.89819 0.95381 0.95534 1.60396 1.41259 1.05618 1.22392 1.20272 0.92421 0.94665 0.89191 0.95389 1.19014 0.95956 0.91658 0.92975 1.21463 0.94390 1.08122 1.32887 0.92008 1.25868 0.98953 0.98728 0.95581 1.70111 1.26180 1.24071 1.36583 0.85533 0.79665 0.78806 0.77549 1.19613 1.21283 1.18927 1.20141 0.96733 0.94939 0.96078 1.21046 0.93743 0.99662 0.97748 1.21439 0.97554 0.95542 1.00384 1.21409 0.99830 0.97575 0.96176 1.21330 0.93911 1.00078 0.99092 1.21208 0.99360 0.95579 0.99829 1.23900 0.98685 1.01165 0.95726 0.86885 0.89249 0.90354 0.87372 0.91070 0.87879 0.90166 0.82850 0.99469 0.98273 0.92876 0.86606 0.84309 0.83515 0.84026 0.86772 0.89106 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 10.76 113.37 1.22 -0.60 16 2 S -0.28 -6.51 21.91 -56.49 -1.24 -7.75 16 3 C -0.07 -1.63 4.43 31.12 0.14 -1.49 16 4 C -0.09 -2.39 7.49 31.12 0.23 -2.16 16 5 C 0.07 2.29 3.65 45.44 0.17 2.45 16 6 N -0.67 -24.62 5.68 -470.63 -2.67 -27.29 16 7 C 0.14 6.09 2.04 44.17 0.09 6.18 16 8 H 0.03 1.23 7.70 -2.38 -0.02 1.21 16 9 C 0.04 2.16 4.55 29.85 0.14 2.30 16 10 C -0.53 -28.73 8.12 25.60 0.21 -28.52 16 11 H 0.06 3.17 7.49 -2.91 -0.02 3.15 16 12 C 0.01 0.40 5.46 84.66 0.46 0.86 16 13 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 14 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 18 C -0.08 -3.02 4.77 -19.87 -0.09 -3.12 16 19 C -0.10 -3.74 9.32 22.27 0.21 -3.53 16 20 C -0.13 -3.89 10.05 22.27 0.22 -3.66 16 21 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 22 C -0.13 -3.63 10.05 22.27 0.22 -3.41 16 23 C -0.14 -4.93 9.67 22.27 0.22 -4.72 16 24 C -0.15 -4.22 7.30 31.12 0.23 -3.99 16 25 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 26 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 30 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.08 2.75 7.80 -2.38 -0.02 2.73 16 32 H 0.35 13.86 6.67 -89.69 -0.60 13.26 16 33 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 34 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 35 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.12 4.33 7.73 -2.91 -0.02 4.31 16 37 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 40 H 0.11 3.85 8.04 -2.91 -0.02 3.83 16 41 H 0.09 2.52 7.82 -2.39 -0.02 2.50 16 42 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 Total: -1.00 -62.90 358.37 2.66 -60.24 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.38 Total: 31.89 kcal Atomic # 6 Polarization: -50.59 SS G_CDS: 3.88 Total: -46.71 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.39 Total: -82.81 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -6.51 SS G_CDS: -1.24 Total: -7.75 kcal Total: -62.90 2.66 -60.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925601658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.416 kcal (2) G-P(sol) polarization free energy of solvation -62.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds