Wall clock time and date at job start Tue Mar 31 2020 07:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 102.99962 * 2 1 4 4 C 1.53784 * 113.61439 * 185.00201 * 3 2 1 5 5 C 1.53775 * 87.08198 * 219.93804 * 4 3 2 6 6 N 1.46900 * 113.61852 * 139.98219 * 5 4 3 7 7 C 1.46894 * 111.00348 * 156.52421 * 6 5 4 8 8 H 1.09001 * 109.47313 * 325.00318 * 7 6 5 9 9 C 1.52997 * 109.47141 * 204.99737 * 7 6 5 10 10 C 1.50703 * 109.47231 * 65.00498 * 9 7 6 11 11 H 1.08004 * 119.99386 * 359.97438 * 10 9 7 12 12 C 1.37873 * 120.00123 * 179.97438 * 10 9 7 13 13 N 1.31513 * 120.00477 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99690 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47605 * 59.99879 * 14 12 10 16 16 H 1.48507 * 109.47031 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47212 * 299.99556 * 14 12 10 18 18 C 1.50706 * 109.47120 * 85.00053 * 7 6 5 19 19 C 1.38234 * 120.00196 * 220.00289 * 18 7 6 20 20 C 1.38235 * 119.99814 * 179.97438 * 19 18 7 21 21 C 1.38230 * 120.00326 * 359.97438 * 20 19 18 22 22 C 1.38235 * 119.99899 * 359.95697 * 21 20 19 23 23 C 1.38234 * 120.00205 * 0.02562 * 22 21 20 24 24 C 1.53777 * 87.17763 * 25.38808 * 5 4 3 25 25 H 1.09004 * 109.46913 * 300.00100 * 1 2 3 26 26 H 1.09004 * 109.47422 * 59.99548 * 1 2 3 27 27 H 1.08994 * 109.47512 * 180.02562 * 1 2 3 28 28 H 1.08993 * 112.85372 * 316.19414 * 3 2 1 29 29 H 1.09005 * 113.61551 * 105.38272 * 4 3 2 30 30 H 1.09009 * 113.68721 * 334.49451 * 4 3 2 31 31 H 1.09006 * 113.61015 * 270.79813 * 5 4 3 32 32 H 1.00903 * 110.99545 * 32.56874 * 6 5 4 33 33 H 1.09003 * 109.47187 * 185.00062 * 9 7 6 34 34 H 1.09000 * 109.47619 * 305.00206 * 9 7 6 35 35 H 0.96993 * 120.00619 * 180.02562 * 13 12 10 36 36 H 1.08000 * 119.99516 * 0.24808 * 19 18 7 37 37 H 1.08000 * 119.99297 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00371 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.00043 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00455 * 179.97438 * 23 22 21 41 41 H 1.09004 * 113.61614 * 89.15408 * 24 5 4 42 42 H 1.08994 * 113.61641 * 220.06470 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7284 2.0520 -0.1229 5 6 3.5203 3.1751 0.9067 6 7 4.6024 3.2754 1.8951 7 6 4.6651 4.6248 2.4721 8 1 4.4034 5.3585 1.7096 9 6 6.0831 4.8979 2.9776 10 6 7.0370 4.9186 1.8110 11 1 6.6686 4.7529 0.8094 12 6 8.3798 5.1488 2.0226 13 7 8.8282 5.3510 3.2422 14 14 9.5620 5.1751 0.5765 15 1 9.1598 6.2441 -0.3725 16 1 10.9382 5.4413 1.0669 17 1 9.5279 3.8612 -0.1147 18 6 3.6943 4.7257 3.6204 19 6 2.9496 5.8769 3.7968 20 6 2.0588 5.9692 4.8498 21 6 1.9123 4.9102 5.7261 22 6 2.6560 3.7585 5.5489 23 6 3.5466 3.6660 4.4957 24 6 2.2994 2.3859 1.4078 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6110 2.3430 -0.6952 29 1 4.0258 2.4119 -1.1078 30 1 4.3584 1.2393 0.2389 31 1 3.2655 4.1359 0.4591 32 1 5.4884 3.0142 1.4889 33 1 6.1085 5.8625 3.4847 34 1 6.3780 4.1133 3.6743 35 1 9.7728 5.5134 3.3910 36 1 3.0605 6.7023 3.1093 37 1 1.4773 6.8687 4.9878 38 1 1.2167 4.9825 6.5491 39 1 2.5419 2.9313 6.2338 40 1 4.1279 2.7664 4.3575 41 1 2.5368 1.6640 2.1893 42 1 1.4449 3.0151 1.6568 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925601667.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:55 Heat of formation + Delta-G solvation = 35.031190 kcal Electronic energy + Delta-G solvation = -20943.409883 eV Core-core repulsion = 18014.525860 eV Total energy + Delta-G solvation = -2928.884023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.26752 -38.27859 -35.13561 -32.52350 -30.47208 -30.17506 -29.06042 -28.45782 -25.57025 -24.89538 -23.41903 -22.10845 -21.82982 -19.65578 -19.26837 -16.78068 -16.44578 -16.05842 -15.50510 -15.03200 -14.88964 -14.57376 -14.43022 -13.87509 -13.62620 -13.39912 -13.19657 -12.85800 -12.70803 -12.29096 -12.26311 -12.09952 -12.03969 -11.71589 -11.09265 -11.00420 -10.90761 -10.61609 -10.54156 -10.48288 -10.33392 -10.15240 -9.81163 -9.56656 -9.19841 -8.46112 -8.39649 -8.05743 -7.86192 -7.63057 -6.06753 -4.11359 1.70315 1.88136 1.93467 2.55682 3.28352 3.34069 3.35238 4.30744 4.40502 4.52402 4.68259 4.83038 4.99602 5.00137 5.02758 5.07074 5.30770 5.34608 5.41109 5.47790 5.55064 5.58904 5.70566 5.84269 5.94900 6.03559 6.06736 6.10732 6.20504 6.34336 6.44688 6.45966 6.59315 6.72493 6.92982 6.99870 7.23114 7.45908 7.54630 7.57987 7.90927 7.98337 8.17348 8.28786 8.94121 9.53332 11.03691 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010545 B = 0.005463 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.604845 B = 5123.836537 C = 7319.777650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.258 6.258 3 C -0.082 4.082 4 C -0.113 4.113 5 C 0.070 3.930 6 N -0.664 5.664 7 C 0.126 3.874 8 H 0.041 0.959 9 C 0.028 3.972 10 C -0.528 4.528 11 H 0.053 0.947 12 C 0.064 3.936 13 N -0.888 5.888 14 Si 0.890 3.110 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.049 4.049 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.138 4.138 22 C -0.130 4.130 23 C -0.086 4.086 24 C -0.108 4.108 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.361 0.639 33 H 0.022 0.978 34 H 0.028 0.972 35 H 0.262 0.738 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.100 0.900 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.144 -5.440 -2.703 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.029 6.029 3 C -0.211 4.211 4 C -0.152 4.152 5 C -0.043 4.043 6 N -0.298 5.298 7 C 0.017 3.983 8 H 0.059 0.941 9 C -0.009 4.009 10 C -0.566 4.566 11 H 0.071 0.929 12 C -0.139 4.139 13 N -0.527 5.527 14 Si 0.718 3.282 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.050 4.050 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.157 4.157 22 C -0.148 4.148 23 C -0.104 4.104 24 C -0.149 4.149 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.184 0.816 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.146 0.854 41 H 0.118 0.882 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.665 -6.569 -2.115 17.118 hybrid contribution 0.150 1.687 -1.500 2.262 sum -15.515 -4.883 -3.615 16.662 Atomic orbital electron populations 1.23320 0.95092 1.05982 1.04689 1.86840 1.06535 1.11850 1.97721 1.24639 1.01192 0.92954 1.02300 1.23063 0.92780 0.99390 1.00000 1.22892 0.93703 0.95872 0.91784 1.60537 1.08604 1.26499 1.34202 1.20720 0.96644 0.88428 0.92518 0.94136 1.19258 0.87122 0.97706 0.96817 1.21079 0.92469 1.49918 0.93105 0.92927 1.24964 0.98351 0.95050 0.95491 1.69946 1.14819 1.47974 1.19913 0.86695 0.80211 0.78569 0.82744 1.20370 1.21259 1.20125 1.20180 0.95025 0.93039 0.96779 1.21026 0.96880 0.97888 0.98566 1.20953 0.99405 0.98378 0.95880 1.20956 1.00730 0.94358 0.99617 1.21120 0.97602 0.97705 0.98397 1.21034 0.97122 0.99009 0.93249 1.23391 0.98057 0.99105 0.94313 0.90555 0.90903 0.88545 0.88352 0.90861 0.88438 0.91445 0.81552 0.95926 0.95317 0.92794 0.86853 0.87072 0.87204 0.86953 0.85420 0.88187 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 10.76 101.05 1.09 0.00 16 2 S -0.26 -3.14 22.19 -107.50 -2.39 -5.53 16 3 C -0.08 -0.99 4.27 -25.82 -0.11 -1.10 16 4 C -0.11 -1.50 7.26 -25.92 -0.19 -1.68 16 5 C 0.07 1.03 3.99 -66.91 -0.27 0.76 16 6 N -0.66 -11.70 5.60 -100.11 -0.56 -12.26 16 7 C 0.13 2.48 2.19 -68.87 -0.15 2.33 16 8 H 0.04 0.82 7.33 -51.93 -0.38 0.44 16 9 C 0.03 0.69 4.55 -27.88 -0.13 0.57 16 10 C -0.53 -13.85 8.12 -34.44 -0.28 -14.13 16 11 H 0.05 1.33 7.49 -52.48 -0.39 0.93 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 14 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 C -0.05 -0.89 4.82 -104.62 -0.50 -1.40 16 19 C -0.13 -2.08 9.67 -39.58 -0.38 -2.47 16 20 C -0.13 -1.89 10.05 -39.59 -0.40 -2.29 16 21 C -0.14 -1.97 10.05 -39.59 -0.40 -2.37 16 22 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 23 C -0.09 -1.48 9.32 -39.58 -0.37 -1.85 16 24 C -0.11 -1.44 7.49 -25.83 -0.19 -1.63 16 25 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.38 8.10 -51.92 -0.42 0.96 16 31 H 0.07 1.02 7.49 -51.93 -0.39 0.63 16 32 H 0.36 6.95 7.04 -39.29 -0.28 6.67 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.11 1.78 8.04 -52.49 -0.42 1.36 16 37 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.13 2.26 7.71 -52.49 -0.40 1.86 16 41 H 0.10 1.46 8.11 -51.93 -0.42 1.04 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -28.05 358.89 -11.49 -39.54 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.89 Total: 8.06 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -2.78 Total: -25.97 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.18 Total: -37.37 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.39 Total: -5.53 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.05 -11.49 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925601667.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.574 kcal (2) G-P(sol) polarization free energy of solvation -28.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds