Wall clock time and date at job start Tue Mar 31 2020 07:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 102.99962 * 2 1 4 4 C 1.53784 * 113.61439 * 185.00201 * 3 2 1 5 5 C 1.53775 * 87.08198 * 219.93804 * 4 3 2 6 6 N 1.46900 * 113.61852 * 139.98219 * 5 4 3 7 7 C 1.46894 * 111.00348 * 156.52421 * 6 5 4 8 8 H 1.09001 * 109.47313 * 325.00318 * 7 6 5 9 9 C 1.52997 * 109.47141 * 204.99737 * 7 6 5 10 10 C 1.50703 * 109.47231 * 65.00498 * 9 7 6 11 11 H 1.08004 * 119.99386 * 359.97438 * 10 9 7 12 12 C 1.37873 * 120.00123 * 179.97438 * 10 9 7 13 13 N 1.31513 * 120.00477 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99690 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47605 * 59.99879 * 14 12 10 16 16 H 1.48507 * 109.47031 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47212 * 299.99556 * 14 12 10 18 18 C 1.50706 * 109.47120 * 85.00053 * 7 6 5 19 19 C 1.38234 * 120.00196 * 220.00289 * 18 7 6 20 20 C 1.38235 * 119.99814 * 179.97438 * 19 18 7 21 21 C 1.38230 * 120.00326 * 359.97438 * 20 19 18 22 22 C 1.38235 * 119.99899 * 359.95697 * 21 20 19 23 23 C 1.38234 * 120.00205 * 0.02562 * 22 21 20 24 24 C 1.53777 * 87.17763 * 25.38808 * 5 4 3 25 25 H 1.09004 * 109.46913 * 300.00100 * 1 2 3 26 26 H 1.09004 * 109.47422 * 59.99548 * 1 2 3 27 27 H 1.08994 * 109.47512 * 180.02562 * 1 2 3 28 28 H 1.08993 * 112.85372 * 316.19414 * 3 2 1 29 29 H 1.09005 * 113.61551 * 105.38272 * 4 3 2 30 30 H 1.09009 * 113.68721 * 334.49451 * 4 3 2 31 31 H 1.09006 * 113.61015 * 270.79813 * 5 4 3 32 32 H 1.00903 * 110.99545 * 32.56874 * 6 5 4 33 33 H 1.09003 * 109.47187 * 185.00062 * 9 7 6 34 34 H 1.09000 * 109.47619 * 305.00206 * 9 7 6 35 35 H 0.96993 * 120.00619 * 180.02562 * 13 12 10 36 36 H 1.08000 * 119.99516 * 0.24808 * 19 18 7 37 37 H 1.08000 * 119.99297 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00371 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.00043 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00455 * 179.97438 * 23 22 21 41 41 H 1.09004 * 113.61614 * 89.15408 * 24 5 4 42 42 H 1.08994 * 113.61641 * 220.06470 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7284 2.0520 -0.1229 5 6 3.5203 3.1751 0.9067 6 7 4.6024 3.2754 1.8951 7 6 4.6651 4.6248 2.4721 8 1 4.4034 5.3585 1.7096 9 6 6.0831 4.8979 2.9776 10 6 7.0370 4.9186 1.8110 11 1 6.6686 4.7529 0.8094 12 6 8.3798 5.1488 2.0226 13 7 8.8282 5.3510 3.2422 14 14 9.5620 5.1751 0.5765 15 1 9.1598 6.2441 -0.3725 16 1 10.9382 5.4413 1.0669 17 1 9.5279 3.8612 -0.1147 18 6 3.6943 4.7257 3.6204 19 6 2.9496 5.8769 3.7968 20 6 2.0588 5.9692 4.8498 21 6 1.9123 4.9102 5.7261 22 6 2.6560 3.7585 5.5489 23 6 3.5466 3.6660 4.4957 24 6 2.2994 2.3859 1.4078 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6110 2.3430 -0.6952 29 1 4.0258 2.4119 -1.1078 30 1 4.3584 1.2393 0.2389 31 1 3.2655 4.1359 0.4591 32 1 5.4884 3.0142 1.4889 33 1 6.1085 5.8625 3.4847 34 1 6.3780 4.1133 3.6743 35 1 9.7728 5.5134 3.3910 36 1 3.0605 6.7023 3.1093 37 1 1.4773 6.8687 4.9878 38 1 1.2167 4.9825 6.5491 39 1 2.5419 2.9313 6.2338 40 1 4.1279 2.7664 4.3575 41 1 2.5368 1.6640 2.1893 42 1 1.4449 3.0151 1.6568 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925601667.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:52 Heat of formation + Delta-G solvation = 21.598436 kcal Electronic energy + Delta-G solvation = -20943.992371 eV Core-core repulsion = 18014.525860 eV Total energy + Delta-G solvation = -2929.466511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = -0.85 seconds Orbital eigenvalues (eV) -40.55260 -39.45071 -36.69549 -34.49709 -31.72661 -31.43674 -30.31818 -29.73636 -26.73032 -26.52431 -24.68601 -23.65416 -23.17877 -21.06938 -20.47081 -18.58963 -17.74258 -17.36217 -16.73793 -16.52949 -16.26283 -15.94161 -15.80362 -14.95416 -14.74951 -14.50451 -14.35249 -14.07517 -14.01686 -13.61499 -13.53963 -13.40026 -13.37822 -13.30263 -12.84991 -12.64587 -12.39265 -12.11258 -12.03280 -11.78784 -11.64416 -11.40545 -11.28415 -11.13175 -10.73209 -10.56897 -9.65832 -9.39813 -9.25751 -8.61734 -8.18520 -6.30200 0.62387 0.68573 0.81914 1.41059 1.42661 1.50251 1.69340 2.40510 3.05000 3.13638 3.46573 3.47412 3.63476 3.85268 3.97554 4.14832 4.19453 4.31241 4.35859 4.37894 4.42978 4.48234 4.59116 4.75873 4.81911 4.83982 4.86393 4.89768 4.91328 4.99595 5.14562 5.22723 5.30950 5.33123 5.44166 5.55968 5.70487 5.75838 5.82459 5.93633 6.17758 6.29381 6.46083 6.63485 6.84558 7.39022 8.92574 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010545 B = 0.005463 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.604845 B = 5123.836537 C = 7319.777650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.300 6.300 3 C -0.064 4.064 4 C -0.110 4.110 5 C 0.064 3.936 6 N -0.664 5.664 7 C 0.143 3.857 8 H 0.032 0.968 9 C 0.040 3.960 10 C -0.534 4.534 11 H 0.061 0.939 12 C 0.008 3.992 13 N -0.930 5.930 14 Si 0.960 3.040 15 H -0.270 1.270 16 H -0.287 1.287 17 H -0.265 1.265 18 C -0.072 4.072 19 C -0.140 4.140 20 C -0.125 4.125 21 C -0.132 4.132 22 C -0.131 4.131 23 C -0.101 4.101 24 C -0.097 4.097 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.348 0.652 33 H -0.012 1.012 34 H -0.003 1.003 35 H 0.263 0.737 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.416 -5.574 -3.437 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.072 6.072 3 C -0.193 4.193 4 C -0.149 4.149 5 C -0.048 4.048 6 N -0.296 5.296 7 C 0.033 3.967 8 H 0.050 0.950 9 C 0.003 3.997 10 C -0.571 4.571 11 H 0.080 0.920 12 C -0.191 4.191 13 N -0.570 5.570 14 Si 0.784 3.216 15 H -0.195 1.195 16 H -0.213 1.213 17 H -0.190 1.190 18 C -0.073 4.073 19 C -0.159 4.159 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.149 4.149 23 C -0.120 4.120 24 C -0.138 4.138 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.128 0.872 28 H 0.134 0.866 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.170 0.830 33 H 0.006 0.994 34 H 0.015 0.985 35 H 0.071 0.929 36 H 0.133 0.867 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.966 -6.709 -2.861 19.390 hybrid contribution 0.766 1.713 -1.197 2.226 sum -17.200 -4.995 -4.058 18.365 Atomic orbital electron populations 1.23383 0.91616 1.07236 1.05619 1.87018 1.10417 1.12017 1.97779 1.24487 1.00336 0.93016 1.01435 1.23000 0.93853 0.98268 0.99799 1.23000 0.93373 0.96550 0.91920 1.60573 1.08688 1.25049 1.35337 1.20360 0.94054 0.89214 0.93089 0.94962 1.19024 0.90416 0.94635 0.95619 1.21449 0.92980 1.48860 0.93856 0.92036 1.25864 1.00364 0.94725 0.98138 1.70095 1.15150 1.49455 1.22267 0.85587 0.77566 0.79094 0.79308 1.19485 1.21285 1.18969 1.20069 0.95943 0.94388 0.96890 1.21191 0.97561 0.97377 0.99725 1.21311 0.98573 0.99686 0.94755 1.21381 1.00304 0.93329 0.99961 1.21409 0.96715 0.99043 0.97766 1.20998 0.98158 0.98386 0.94421 1.23231 0.97247 0.98488 0.94807 0.90054 0.89503 0.87153 0.86584 0.89869 0.89632 0.91465 0.83038 0.99360 0.98462 0.92857 0.86651 0.84069 0.83680 0.84611 0.87001 0.89667 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.76 113.37 1.22 -0.46 16 2 S -0.30 -6.93 22.19 -56.49 -1.25 -8.18 16 3 C -0.06 -1.45 4.27 31.18 0.13 -1.31 16 4 C -0.11 -2.86 7.26 31.12 0.23 -2.64 16 5 C 0.06 1.87 3.99 45.44 0.18 2.05 16 6 N -0.66 -24.35 5.60 -470.63 -2.63 -26.98 16 7 C 0.14 5.86 2.19 44.17 0.10 5.96 16 8 H 0.03 1.35 7.33 -2.39 -0.02 1.34 16 9 C 0.04 2.10 4.55 29.85 0.14 2.24 16 10 C -0.53 -28.94 8.12 25.60 0.21 -28.74 16 11 H 0.06 3.16 7.49 -2.91 -0.02 3.14 16 12 C 0.01 0.42 5.46 84.65 0.46 0.89 16 13 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 14 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 18 C -0.07 -2.68 4.82 -19.86 -0.10 -2.77 16 19 C -0.14 -4.62 9.67 22.27 0.22 -4.41 16 20 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 21 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 22 C -0.13 -3.77 10.05 22.27 0.22 -3.54 16 23 C -0.10 -3.54 9.32 22.27 0.21 -3.34 16 24 C -0.10 -2.52 7.49 31.18 0.23 -2.29 16 25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.09 2.45 8.10 -2.38 -0.02 2.43 16 31 H 0.07 2.01 7.49 -2.38 -0.02 1.99 16 32 H 0.35 14.04 7.04 -89.69 -0.63 13.41 16 33 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 34 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.12 3.65 8.04 -2.91 -0.02 3.62 16 37 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 39 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 40 H 0.11 4.18 7.71 -2.91 -0.02 4.16 16 41 H 0.08 2.50 8.11 -2.39 -0.02 2.48 16 42 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -62.74 358.89 2.67 -60.07 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.35 Total: 30.10 kcal Atomic # 6 Polarization: -48.56 SS G_CDS: 3.89 Total: -44.67 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -2.35 Total: -82.73 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -6.93 SS G_CDS: -1.25 Total: -8.18 kcal Total: -62.74 2.67 -60.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925601667.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.672 kcal (2) G-P(sol) polarization free energy of solvation -62.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.85 seconds