Wall clock time and date at job start Tue Mar 31 2020 07:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00018 * 2 1 4 4 H 1.48508 * 109.46879 * 239.99533 * 3 2 1 5 5 H 1.48495 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47093 * 119.99929 * 3 2 1 7 7 C 1.37882 * 119.99466 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99212 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00410 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47257 * 300.00609 * 9 7 2 11 11 O 1.42906 * 109.46958 * 59.99925 * 9 7 2 12 12 C 1.53000 * 109.47205 * 179.97438 * 9 7 2 13 13 N 1.46894 * 109.47002 * 180.02562 * 12 9 7 14 14 C 1.48073 * 111.00384 * 293.95716 * 13 12 9 15 15 C 1.53364 * 112.15675 * 191.80010 * 14 13 12 16 16 C 1.51038 * 111.73493 * 318.79985 * 15 14 13 17 17 O 1.43660 * 107.91689 * 91.96607 * 16 15 14 18 18 C 1.36477 * 117.39242 * 279.20402 * 17 16 15 19 19 H 1.09000 * 109.09145 * 300.92530 * 18 17 16 20 20 C 1.50701 * 109.09317 * 181.85140 * 18 17 16 21 21 C 1.38231 * 119.99846 * 324.91120 * 20 18 17 22 22 C 1.38243 * 120.00070 * 179.97438 * 21 20 18 23 23 C 1.38235 * 119.99602 * 0.07188 * 22 21 20 24 24 C 1.38230 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38234 * 120.00257 * 144.99670 * 20 18 17 26 26 C 1.44812 * 110.99904 * 165.84539 * 13 12 9 27 27 H 0.96997 * 119.99690 * 0.02562 * 1 2 3 28 28 H 0.96703 * 113.99446 * 60.00541 * 11 9 7 29 29 H 1.09001 * 109.46588 * 60.00255 * 12 9 7 30 30 H 1.09001 * 109.47052 * 300.00546 * 12 9 7 31 31 H 1.08991 * 108.94166 * 71.10311 * 14 13 12 32 32 H 1.09006 * 108.93587 * 312.48668 * 14 13 12 33 33 H 1.09001 * 109.02430 * 198.22520 * 15 14 13 34 34 H 1.08994 * 109.03172 * 79.38795 * 15 14 13 35 35 H 1.08997 * 109.77065 * 332.36226 * 16 15 14 36 36 H 1.08996 * 109.76687 * 211.57016 * 16 15 14 37 37 H 1.08001 * 120.00367 * 0.08711 * 21 20 18 38 38 H 1.08000 * 119.99728 * 180.34119 * 22 21 20 39 39 H 1.08000 * 119.99297 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00371 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.99751 * 359.97438 * 25 20 18 42 42 H 1.09004 * 109.53310 * 99.97659 * 26 13 12 43 43 H 1.08991 * 109.53471 * 339.73694 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6246 -2.5563 0.8919 11 8 0.4290 -2.5756 -1.1648 12 6 2.2452 -3.6621 0.0015 13 7 1.5107 -4.9342 0.0020 14 6 0.7597 -5.1130 1.2656 15 6 0.2223 -6.5408 1.4220 16 6 -0.3268 -7.0774 0.1213 17 8 0.7341 -7.7731 -0.5527 18 6 1.6329 -7.0213 -1.2524 19 1 1.1037 -6.4544 -2.0184 20 6 2.6294 -7.9360 -1.9168 21 6 3.0314 -9.0969 -1.2831 22 6 3.9451 -9.9363 -1.8927 23 6 4.4578 -9.6139 -3.1354 24 6 4.0565 -8.4526 -3.7686 25 6 3.1427 -7.6133 -3.1590 26 6 2.3863 -6.0392 -0.3288 27 1 -0.4849 0.8400 -0.0004 28 1 0.9209 -2.5309 -1.9961 29 1 2.8725 -3.6040 0.8910 30 1 2.8712 -3.6048 -0.8890 31 1 -0.0779 -4.4158 1.2810 32 1 1.4196 -4.8894 2.1039 33 1 -0.5707 -6.5421 2.1699 34 1 1.0299 -7.1894 1.7614 35 1 -0.6790 -6.2528 -0.4983 36 1 -1.1483 -7.7646 0.3236 37 1 2.6303 -9.3491 -0.3126 38 1 4.2550 -10.8461 -1.4001 39 1 5.1719 -10.2695 -3.6114 40 1 4.4574 -8.2005 -4.7393 41 1 2.8293 -6.7059 -3.6537 42 1 2.6847 -6.5538 0.5846 43 1 3.2709 -5.6622 -0.8419 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929528456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:51 Heat of formation + Delta-G solvation = -61.179245 kcal Electronic energy + Delta-G solvation = -23805.607219 eV Core-core repulsion = 20429.798328 eV Total energy + Delta-G solvation = -3375.808892 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16471 -38.59022 -36.75718 -34.70666 -33.27846 -32.07465 -31.03021 -30.82287 -28.88498 -26.77045 -26.12109 -24.26455 -22.71843 -22.17200 -21.17190 -20.59240 -19.45645 -17.28449 -16.88571 -16.39076 -16.03201 -15.71658 -14.99043 -14.67231 -14.58032 -14.45083 -14.19612 -13.76562 -13.39363 -13.37604 -13.18371 -12.88224 -12.77795 -12.36374 -11.95977 -11.71846 -11.44931 -11.20852 -11.07264 -10.97519 -10.92256 -10.85215 -10.49508 -10.38856 -10.31314 -10.02205 -9.42237 -9.03156 -8.91774 -8.68890 -8.56525 -8.07735 -7.55668 -6.00672 -4.19129 1.31969 1.40904 3.28059 3.33606 3.35114 3.69704 3.88746 4.27639 4.44781 4.87923 4.93485 5.00039 5.09772 5.15423 5.17466 5.26877 5.38362 5.44251 5.53069 5.54601 5.61061 5.68188 5.80725 5.93714 5.99340 6.03987 6.10689 6.13146 6.17662 6.20454 6.27521 6.47020 6.48849 6.50396 6.57502 6.65564 6.79771 6.98993 7.51211 7.65642 7.75412 7.81747 7.89912 8.20447 8.84643 9.46030 9.62328 11.03345 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020604 B = 0.003915 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.616028 B = 7150.687888 C = 8016.042278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.576 4.576 8 H 0.053 0.947 9 C 0.238 3.762 10 H 0.053 0.947 11 O -0.554 6.554 12 C 0.038 3.962 13 N -0.544 5.544 14 C 0.062 3.938 15 C -0.153 4.153 16 C 0.077 3.923 17 O -0.384 6.384 18 C 0.150 3.850 19 H 0.064 0.936 20 C -0.074 4.074 21 C -0.095 4.095 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.109 4.109 26 C 0.035 3.965 27 H 0.261 0.739 28 H 0.342 0.658 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.041 0.959 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.776 -17.889 -2.556 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.125 4.125 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.615 4.615 8 H 0.071 0.929 9 C 0.180 3.820 10 H 0.071 0.929 11 O -0.355 6.355 12 C -0.089 4.089 13 N -0.269 5.269 14 C -0.065 4.065 15 C -0.191 4.191 16 C 0.001 3.999 17 O -0.303 6.303 18 C 0.090 3.910 19 H 0.082 0.918 20 C -0.074 4.074 21 C -0.113 4.113 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.141 4.141 25 C -0.127 4.127 26 C -0.095 4.095 27 H 0.070 0.930 28 H 0.185 0.815 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.059 0.941 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.800 -17.986 -2.407 18.540 hybrid contribution 1.697 1.347 0.392 2.202 sum 5.497 -16.639 -2.014 17.639 Atomic orbital electron populations 1.70070 1.05890 1.26491 1.46941 1.25011 0.94677 0.99016 0.93840 0.86748 0.79736 0.83270 0.78668 1.20138 1.21177 1.20239 1.21630 0.93088 0.91715 1.55017 0.92873 1.19294 0.87794 0.88452 0.86469 0.92894 1.86554 1.37718 1.96304 1.14953 1.23137 0.96945 0.89449 0.99402 1.60614 1.30008 1.02260 1.33975 1.22340 0.98424 0.96136 0.89576 1.22060 1.01353 0.96837 0.98885 1.22338 0.88281 0.96823 0.92430 1.86336 1.39336 1.36719 1.67870 1.20030 0.88433 0.89665 0.92869 0.91778 1.19812 0.97342 0.95745 0.94538 1.21017 0.96295 0.93867 1.00152 1.21149 0.97889 0.99702 0.95737 1.21126 1.00289 0.97322 0.95605 1.21087 0.98081 0.94917 0.99988 1.21031 0.97360 0.99795 0.94475 1.22667 0.95321 0.92974 0.98506 0.92952 0.81541 0.95648 0.91895 0.89872 0.95265 0.90661 0.91619 0.90874 0.89504 0.85711 0.86327 0.86416 0.86092 0.85724 0.94073 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.24 12.84 55.43 0.71 -24.53 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.58 -15.70 8.76 -34.44 -0.30 -16.00 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 9 C 0.24 5.93 2.70 -27.89 -0.08 5.86 16 10 H 0.05 1.45 6.81 -51.93 -0.35 1.10 16 11 O -0.55 -14.18 12.59 -35.23 -0.44 -14.62 16 12 C 0.04 0.77 4.47 -3.83 -0.02 0.75 16 13 N -0.54 -9.69 3.78 -234.17 -0.89 -10.57 16 14 C 0.06 1.04 4.94 -2.99 -0.01 1.03 16 15 C -0.15 -2.06 5.39 -27.53 -0.15 -2.21 16 16 C 0.08 1.04 6.49 36.17 0.23 1.27 16 17 O -0.38 -5.58 8.74 -21.28 -0.19 -5.76 16 18 C 0.15 2.19 2.64 -27.13 -0.07 2.12 16 19 H 0.06 1.02 8.03 -51.93 -0.42 0.60 16 20 C -0.07 -0.98 4.91 -104.63 -0.51 -1.50 16 21 C -0.10 -1.18 9.34 -39.58 -0.37 -1.55 16 22 C -0.13 -1.36 10.05 -39.58 -0.40 -1.75 16 23 C -0.13 -1.27 10.05 -39.59 -0.40 -1.67 16 24 C -0.12 -1.31 10.05 -39.59 -0.40 -1.71 16 25 C -0.11 -1.33 9.68 -39.58 -0.38 -1.71 16 26 C 0.03 0.54 4.80 -4.19 -0.02 0.52 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.34 7.92 9.04 45.56 0.41 8.33 16 29 H 0.03 0.52 7.99 -51.93 -0.41 0.11 16 30 H 0.06 1.26 7.65 -51.93 -0.40 0.86 16 31 H 0.08 1.56 7.03 -51.93 -0.37 1.20 16 32 H 0.03 0.49 7.93 -51.93 -0.41 0.08 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.87 7.29 -51.93 -0.38 0.50 16 35 H 0.07 1.12 7.61 -51.93 -0.40 0.72 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.12 1.51 7.63 -52.49 -0.40 1.11 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 42 H 0.04 0.64 7.01 -51.93 -0.36 0.27 16 43 H 0.07 1.11 7.23 -51.93 -0.38 0.74 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -30.31 344.29 -9.55 -39.86 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -5.94 Total: 8.78 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -2.97 Total: -14.40 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.17 Total: -35.10 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.63 Total: -20.39 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.31 -9.55 -39.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929528456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.319 kcal (2) G-P(sol) polarization free energy of solvation -30.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds