Wall clock time and date at job start Tue Mar 31 2020 07:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00018 * 2 1 4 4 H 1.48508 * 109.46879 * 239.99533 * 3 2 1 5 5 H 1.48495 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47093 * 119.99929 * 3 2 1 7 7 C 1.37882 * 119.99466 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99212 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00410 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47257 * 300.00609 * 9 7 2 11 11 O 1.42906 * 109.46958 * 59.99925 * 9 7 2 12 12 C 1.53000 * 109.47205 * 179.97438 * 9 7 2 13 13 N 1.46894 * 109.47002 * 180.02562 * 12 9 7 14 14 C 1.48073 * 111.00384 * 293.95716 * 13 12 9 15 15 C 1.53364 * 112.15675 * 191.80010 * 14 13 12 16 16 C 1.51038 * 111.73493 * 318.79985 * 15 14 13 17 17 O 1.43660 * 107.91689 * 91.96607 * 16 15 14 18 18 C 1.36477 * 117.39242 * 279.20402 * 17 16 15 19 19 H 1.09000 * 109.09145 * 300.92530 * 18 17 16 20 20 C 1.50701 * 109.09317 * 181.85140 * 18 17 16 21 21 C 1.38231 * 119.99846 * 324.91120 * 20 18 17 22 22 C 1.38243 * 120.00070 * 179.97438 * 21 20 18 23 23 C 1.38235 * 119.99602 * 0.07188 * 22 21 20 24 24 C 1.38230 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38234 * 120.00257 * 144.99670 * 20 18 17 26 26 C 1.44812 * 110.99904 * 165.84539 * 13 12 9 27 27 H 0.96997 * 119.99690 * 0.02562 * 1 2 3 28 28 H 0.96703 * 113.99446 * 60.00541 * 11 9 7 29 29 H 1.09001 * 109.46588 * 60.00255 * 12 9 7 30 30 H 1.09001 * 109.47052 * 300.00546 * 12 9 7 31 31 H 1.08991 * 108.94166 * 71.10311 * 14 13 12 32 32 H 1.09006 * 108.93587 * 312.48668 * 14 13 12 33 33 H 1.09001 * 109.02430 * 198.22520 * 15 14 13 34 34 H 1.08994 * 109.03172 * 79.38795 * 15 14 13 35 35 H 1.08997 * 109.77065 * 332.36226 * 16 15 14 36 36 H 1.08996 * 109.76687 * 211.57016 * 16 15 14 37 37 H 1.08001 * 120.00367 * 0.08711 * 21 20 18 38 38 H 1.08000 * 119.99728 * 180.34119 * 22 21 20 39 39 H 1.08000 * 119.99297 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00371 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.99751 * 359.97438 * 25 20 18 42 42 H 1.09004 * 109.53310 * 99.97659 * 26 13 12 43 43 H 1.08991 * 109.53471 * 339.73694 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6246 -2.5563 0.8919 11 8 0.4290 -2.5756 -1.1648 12 6 2.2452 -3.6621 0.0015 13 7 1.5107 -4.9342 0.0020 14 6 0.7597 -5.1130 1.2656 15 6 0.2223 -6.5408 1.4220 16 6 -0.3268 -7.0774 0.1213 17 8 0.7341 -7.7731 -0.5527 18 6 1.6329 -7.0213 -1.2524 19 1 1.1037 -6.4544 -2.0184 20 6 2.6294 -7.9360 -1.9168 21 6 3.0314 -9.0969 -1.2831 22 6 3.9451 -9.9363 -1.8927 23 6 4.4578 -9.6139 -3.1354 24 6 4.0565 -8.4526 -3.7686 25 6 3.1427 -7.6133 -3.1590 26 6 2.3863 -6.0392 -0.3288 27 1 -0.4849 0.8400 -0.0004 28 1 0.9209 -2.5309 -1.9961 29 1 2.8725 -3.6040 0.8910 30 1 2.8712 -3.6048 -0.8890 31 1 -0.0779 -4.4158 1.2810 32 1 1.4196 -4.8894 2.1039 33 1 -0.5707 -6.5421 2.1699 34 1 1.0299 -7.1894 1.7614 35 1 -0.6790 -6.2528 -0.4983 36 1 -1.1483 -7.7646 0.3236 37 1 2.6303 -9.3491 -0.3126 38 1 4.2550 -10.8461 -1.4001 39 1 5.1719 -10.2695 -3.6114 40 1 4.4574 -8.2005 -4.7393 41 1 2.8293 -6.7059 -3.6537 42 1 2.6847 -6.5538 0.5846 43 1 3.2709 -5.6622 -0.8419 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929528456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:50 Heat of formation + Delta-G solvation = -80.883814 kcal Electronic energy + Delta-G solvation = -23806.461674 eV Core-core repulsion = 20429.798328 eV Total energy + Delta-G solvation = -3376.663346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.29476 -39.59766 -38.34929 -36.44592 -34.38353 -34.21139 -32.16378 -31.71270 -30.48477 -28.31270 -27.42204 -25.94727 -23.71958 -23.23223 -22.76090 -21.71810 -20.90974 -19.08856 -18.07981 -17.56947 -17.29870 -16.77145 -16.68012 -16.36479 -16.04585 -15.82219 -15.37311 -15.20091 -14.94444 -14.65222 -14.33964 -14.17244 -13.81851 -13.70450 -13.32978 -13.05272 -12.93766 -12.82958 -12.74427 -12.71862 -12.28662 -12.03835 -11.91840 -11.85596 -11.60834 -11.48444 -11.00933 -10.69287 -10.57254 -10.10731 -9.77468 -9.61788 -9.03241 -8.13583 -6.39819 0.43787 0.55093 1.39991 1.41398 1.49650 2.37449 2.70430 2.81243 3.06314 3.12780 3.82772 3.89553 3.94994 4.08548 4.13075 4.23422 4.24116 4.27739 4.33929 4.41897 4.43016 4.51930 4.61093 4.62465 4.69294 4.76171 4.84832 4.91373 4.95511 4.99581 5.08990 5.13046 5.19731 5.23297 5.59219 5.61723 5.65926 5.73202 5.75017 5.97107 6.15063 6.17810 6.33316 6.64450 6.73346 7.34376 7.61516 8.90501 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020604 B = 0.003915 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.616028 B = 7150.687888 C = 8016.042278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.028 3.972 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.592 4.592 8 H 0.057 0.943 9 C 0.241 3.759 10 H 0.020 0.980 11 O -0.568 6.568 12 C 0.055 3.945 13 N -0.551 5.551 14 C 0.062 3.938 15 C -0.143 4.143 16 C 0.076 3.924 17 O -0.385 6.385 18 C 0.160 3.840 19 H 0.044 0.956 20 C -0.094 4.094 21 C -0.107 4.107 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.124 4.124 26 C 0.041 3.959 27 H 0.261 0.739 28 H 0.351 0.649 29 H 0.022 0.978 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.025 0.975 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.123 0.877 42 H 0.045 0.955 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.404 -19.400 -2.964 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.175 4.175 3 Si 0.783 3.217 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.630 4.630 8 H 0.075 0.925 9 C 0.183 3.817 10 H 0.038 0.962 11 O -0.371 6.371 12 C -0.072 4.072 13 N -0.275 5.275 14 C -0.065 4.065 15 C -0.181 4.181 16 C 0.001 3.999 17 O -0.304 6.304 18 C 0.099 3.901 19 H 0.062 0.938 20 C -0.094 4.094 21 C -0.125 4.125 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.088 4.088 27 H 0.070 0.930 28 H 0.195 0.805 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.161 0.839 39 H 0.165 0.835 40 H 0.161 0.839 41 H 0.141 0.859 42 H 0.063 0.937 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.443 -19.515 -2.817 20.455 hybrid contribution 1.183 1.752 0.495 2.171 sum 6.626 -17.763 -2.323 19.101 Atomic orbital electron populations 1.70213 1.07618 1.27397 1.48245 1.25871 0.95465 1.02793 0.93331 0.85633 0.78393 0.78577 0.79086 1.19163 1.20954 1.19440 1.22033 0.93477 0.92935 1.54542 0.92467 1.19120 0.87714 0.89801 0.85091 0.96214 1.86501 1.38535 1.96438 1.15619 1.22748 0.95651 0.89414 0.99432 1.60535 1.30259 1.01973 1.34748 1.22333 0.97294 0.97935 0.88934 1.22000 1.02195 0.94299 0.99562 1.22446 0.88818 0.96876 0.91794 1.86351 1.39419 1.36818 1.67828 1.19855 0.88495 0.89686 0.92021 0.93789 1.19768 0.97962 0.96342 0.95339 1.21111 0.97093 0.93958 1.00365 1.21466 0.97004 1.00123 0.95989 1.21519 1.00074 0.97233 0.95289 1.21398 0.97342 0.94766 1.00832 1.21169 0.98167 1.00399 0.94460 1.22666 0.95035 0.92212 0.98847 0.92987 0.80499 0.95989 0.91362 0.92719 0.95632 0.88314 0.90850 0.93233 0.86520 0.85821 0.83896 0.83517 0.83909 0.85863 0.93675 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.94 12.84 21.45 0.28 -53.67 16 2 C 0.03 1.57 5.40 84.65 0.46 2.03 16 3 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.59 -32.70 8.76 25.60 0.22 -32.47 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.24 12.42 2.70 29.85 0.08 12.50 16 10 H 0.02 1.16 6.81 -2.39 -0.02 1.14 16 11 O -0.57 -30.08 12.59 -148.98 -1.88 -31.95 16 12 C 0.06 2.31 4.47 86.30 0.39 2.69 16 13 N -0.55 -20.06 3.78 -894.78 -3.38 -23.45 16 14 C 0.06 2.14 4.94 86.20 0.43 2.56 16 15 C -0.14 -3.71 5.39 30.08 0.16 -3.55 16 16 C 0.08 2.00 6.49 71.34 0.46 2.46 16 17 O -0.39 -10.96 8.74 -99.05 -0.87 -11.83 16 18 C 0.16 4.67 2.64 30.34 0.08 4.75 16 19 H 0.04 1.45 8.03 -2.39 -0.02 1.43 16 20 C -0.09 -2.44 4.91 -19.87 -0.10 -2.54 16 21 C -0.11 -2.50 9.34 22.27 0.21 -2.29 16 22 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 23 C -0.12 -2.13 10.05 22.27 0.22 -1.91 16 24 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 25 C -0.12 -2.94 9.68 22.27 0.22 -2.73 16 26 C 0.04 1.29 4.80 87.18 0.42 1.70 16 27 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 28 H 0.35 16.73 9.04 -74.06 -0.67 16.06 16 29 H 0.02 0.92 7.99 -2.39 -0.02 0.90 16 30 H 0.07 2.75 7.65 -2.39 -0.02 2.73 16 31 H 0.05 2.17 7.03 -2.39 -0.02 2.16 16 32 H 0.03 0.88 7.93 -2.38 -0.02 0.86 16 33 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.07 1.83 7.29 -2.39 -0.02 1.82 16 35 H 0.05 1.55 7.61 -2.39 -0.02 1.53 16 36 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.12 2.83 7.63 -2.91 -0.02 2.81 16 38 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.12 2.84 8.06 -2.91 -0.02 2.81 16 42 H 0.04 1.37 7.01 -2.38 -0.02 1.35 16 43 H 0.07 2.20 7.23 -2.39 -0.02 2.18 16 Total: -1.00 -65.83 344.29 0.20 -65.63 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.33 Total: 31.00 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 3.69 Total: -21.15 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -3.11 Total: -77.11 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -2.74 Total: -43.78 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -65.83 0.20 -65.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929528456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.249 kcal (2) G-P(sol) polarization free energy of solvation -65.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds