Wall clock time and date at job start Tue Mar 31 2020 07:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99789 * 2 1 4 4 H 1.48500 * 109.47126 * 240.00053 * 3 2 1 5 5 H 1.48500 * 109.47232 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47415 * 120.00370 * 3 2 1 7 7 C 1.37877 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00090 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99997 * 359.72723 * 7 2 1 10 10 H 1.08994 * 109.47056 * 300.00015 * 9 7 2 11 11 O 1.42903 * 109.47044 * 59.99328 * 9 7 2 12 12 C 1.52997 * 109.47327 * 179.97438 * 9 7 2 13 13 N 1.46893 * 109.47140 * 173.87800 * 12 9 7 14 14 C 1.44011 * 111.00160 * 307.21032 * 13 12 9 15 15 C 1.54613 * 112.48706 * 217.17525 * 14 13 12 16 16 C 1.54574 * 110.90909 * 319.61323 * 15 14 13 17 17 O 1.39913 * 113.21771 * 319.28605 * 16 15 14 18 18 C 1.44512 * 112.80944 * 94.89519 * 17 16 15 19 19 H 1.08999 * 109.06320 * 40.88724 * 18 17 16 20 20 C 1.50703 * 109.11288 * 159.97933 * 18 17 16 21 21 C 1.38233 * 120.00031 * 41.53213 * 20 18 17 22 22 C 1.38235 * 119.99962 * 179.81109 * 21 20 18 23 23 C 1.38232 * 119.99923 * 0.40122 * 22 21 20 24 24 C 1.38232 * 120.00098 * 359.85477 * 23 22 21 25 25 C 1.38236 * 119.99833 * 221.81021 * 20 18 17 26 26 C 1.46263 * 111.31069 * 280.44763 * 18 17 16 27 27 H 0.97001 * 120.00237 * 359.97438 * 1 2 3 28 28 H 0.96702 * 113.99687 * 60.00733 * 11 9 7 29 29 H 1.09003 * 109.47110 * 293.87589 * 12 9 7 30 30 H 1.08998 * 109.47103 * 53.87109 * 12 9 7 31 31 H 1.09003 * 108.88243 * 337.95294 * 14 13 12 32 32 H 1.09006 * 108.87970 * 96.40018 * 14 13 12 33 33 H 1.09002 * 109.19572 * 199.24364 * 15 14 13 34 34 H 1.09004 * 109.19017 * 79.98011 * 15 14 13 35 35 H 1.08996 * 108.73676 * 198.32228 * 16 15 14 36 36 H 1.08995 * 108.73635 * 80.24513 * 16 15 14 37 37 H 1.08003 * 120.00221 * 0.02562 * 21 20 18 38 38 H 1.08006 * 120.00013 * 180.23397 * 22 21 20 39 39 H 1.08002 * 120.00174 * 179.83527 * 23 22 21 40 40 H 1.08002 * 119.99825 * 179.97438 * 24 23 22 41 41 H 1.07995 * 120.00134 * 359.97438 * 25 20 18 42 42 H 1.08995 * 108.91540 * 298.76401 * 26 18 17 43 43 H 1.09000 * 108.84337 * 180.16834 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0073 10 1 0.6282 -2.5544 0.9000 11 8 0.4246 -2.5781 -1.1558 12 6 2.2453 -3.6620 0.0059 13 7 1.5175 -4.9286 0.1602 14 6 0.6506 -4.8891 1.3094 15 6 0.5925 -6.2433 2.0532 16 6 0.5501 -7.4208 1.0527 17 8 -0.2741 -7.1771 -0.0513 18 6 0.4522 -6.6629 -1.1899 19 1 1.3984 -7.1965 -1.2792 20 6 -0.3617 -6.8899 -2.4378 21 6 -1.7265 -6.6713 -2.4222 22 6 -2.4724 -6.8758 -3.5679 23 6 -1.8548 -7.3069 -4.7270 24 6 -0.4907 -7.5306 -4.7412 25 6 0.2558 -7.3223 -3.5966 26 6 0.7208 -5.2323 -1.0472 27 1 -0.4850 0.8400 0.0004 28 1 0.9133 -2.5351 -1.9891 29 1 2.7934 -3.6704 -0.9363 30 1 2.9457 -3.5423 0.8324 31 1 1.0112 -4.1241 1.9971 32 1 -0.3548 -4.6221 0.9838 33 1 -0.3006 -6.2713 2.6775 34 1 1.4744 -6.3426 2.6862 35 1 0.1871 -8.3081 1.5714 36 1 1.5621 -7.6153 0.6978 37 1 -2.2096 -6.3374 -1.5158 38 1 -3.5383 -6.7013 -3.5568 39 1 -2.4379 -7.4692 -5.6215 40 1 -0.0082 -7.8678 -5.6467 41 1 1.3215 -7.4971 -3.6077 42 1 -0.2279 -4.6989 -0.9877 43 1 1.2654 -4.8869 -1.9259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929528457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:54 Heat of formation + Delta-G solvation = -59.043171 kcal Electronic energy + Delta-G solvation = -24223.489923 eV Core-core repulsion = 20847.773658 eV Total energy + Delta-G solvation = -3375.716265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.06327 -38.54962 -36.92179 -34.42344 -33.33297 -32.14413 -30.86618 -30.65431 -29.04993 -26.93068 -25.78487 -24.21462 -22.63059 -22.13118 -21.29838 -20.59936 -19.30180 -17.25316 -16.86074 -16.38282 -15.75066 -15.46731 -14.98197 -14.64479 -14.54064 -14.36559 -14.21736 -13.83306 -13.32035 -13.24492 -13.10229 -12.80844 -12.57664 -12.43654 -11.98232 -11.63910 -11.17473 -11.10734 -10.95943 -10.94436 -10.88674 -10.80148 -10.43617 -10.38802 -10.04394 -9.98896 -9.43376 -9.33643 -8.81549 -8.67168 -8.59570 -8.57582 -7.31847 -6.02858 -4.22578 1.40483 1.51278 3.26241 3.31977 3.33512 3.78778 4.01777 4.35076 4.49625 4.96619 4.99719 5.08108 5.21681 5.23139 5.28247 5.33372 5.47672 5.50414 5.63436 5.68201 5.74699 5.80238 5.91377 5.96177 6.09283 6.13572 6.15804 6.24134 6.28823 6.37476 6.44490 6.52660 6.57249 6.60719 6.67716 6.73556 6.83551 7.08203 7.45056 7.51841 7.64935 7.76844 7.84108 8.16561 8.79914 9.31221 9.53989 11.00090 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.004702 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.397200 B = 5953.382046 C = 6997.822927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.574 4.574 8 H 0.055 0.945 9 C 0.198 3.802 10 H 0.059 0.941 11 O -0.562 6.562 12 C 0.029 3.971 13 N -0.532 5.532 14 C 0.056 3.944 15 C -0.140 4.140 16 C 0.074 3.926 17 O -0.369 6.369 18 C 0.138 3.862 19 H 0.066 0.934 20 C -0.077 4.077 21 C -0.086 4.086 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.110 4.110 26 C 0.034 3.966 27 H 0.261 0.739 28 H 0.342 0.658 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.071 0.929 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 -15.743 -4.357 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.613 4.613 8 H 0.073 0.927 9 C 0.140 3.860 10 H 0.076 0.924 11 O -0.365 6.365 12 C -0.099 4.099 13 N -0.255 5.255 14 C -0.073 4.073 15 C -0.178 4.178 16 C -0.004 4.004 17 O -0.288 6.288 18 C 0.081 3.919 19 H 0.084 0.916 20 C -0.077 4.077 21 C -0.104 4.104 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.129 4.129 26 C -0.094 4.094 27 H 0.070 0.930 28 H 0.186 0.814 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.089 0.911 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.079 -16.086 -3.808 16.566 hybrid contribution 0.700 1.901 -0.381 2.062 sum -0.379 -14.185 -4.189 14.796 Atomic orbital electron populations 1.70065 1.05949 1.26539 1.46912 1.25039 0.94669 0.99124 0.93769 0.86747 0.79739 0.83240 0.78704 1.20150 1.21219 1.20153 1.21597 0.93127 0.91600 1.54947 0.92660 1.20050 0.88653 0.90977 0.86365 0.92373 1.86587 1.38491 1.96143 1.15244 1.23126 0.97271 0.88091 1.01395 1.61767 1.27136 1.34153 1.02426 1.21803 0.96362 0.95850 0.93303 1.22712 1.01301 0.95778 0.98051 1.22068 0.94696 0.96145 0.87519 1.87713 1.35150 1.84443 1.21471 1.20074 0.92789 0.95437 0.83625 0.91587 1.19691 0.94428 0.99515 0.94111 1.21047 0.93462 0.97587 0.98310 1.21169 0.99948 0.99961 0.93088 1.21126 0.94924 0.99972 0.98043 1.21038 0.94215 1.01104 0.97946 1.20958 0.99783 0.99507 0.92615 1.21616 0.99317 0.94509 0.93970 0.92953 0.81415 0.91921 0.91072 0.91611 0.93606 0.91981 0.91557 0.91348 0.93028 0.85546 0.86162 0.86390 0.86216 0.86131 0.91115 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.28 12.83 55.43 0.71 -24.57 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.57 -15.49 8.76 -34.44 -0.30 -15.79 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.20 4.83 2.53 -27.88 -0.07 4.76 16 10 H 0.06 1.58 6.33 -51.93 -0.33 1.26 16 11 O -0.56 -13.89 9.98 -35.23 -0.35 -14.24 16 12 C 0.03 0.57 4.89 -3.83 -0.02 0.55 16 13 N -0.53 -9.50 4.48 -239.17 -1.07 -10.57 16 14 C 0.06 1.00 3.98 -4.52 -0.02 0.99 16 15 C -0.14 -2.00 6.52 -25.06 -0.16 -2.17 16 16 C 0.07 1.01 6.20 37.98 0.24 1.24 16 17 O -0.37 -5.77 9.39 -32.70 -0.31 -6.08 16 18 C 0.14 2.08 2.52 -31.08 -0.08 2.00 16 19 H 0.07 0.94 7.29 -51.93 -0.38 0.56 16 20 C -0.08 -1.10 4.89 -104.62 -0.51 -1.61 16 21 C -0.09 -1.24 9.27 -39.58 -0.37 -1.61 16 22 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 23 C -0.12 -1.39 10.05 -39.59 -0.40 -1.79 16 24 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 25 C -0.11 -1.38 9.66 -39.58 -0.38 -1.76 16 26 C 0.03 0.58 2.95 -6.53 -0.02 0.56 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.34 7.71 8.98 45.56 0.41 8.12 16 29 H 0.06 1.22 7.82 -51.93 -0.41 0.81 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.07 1.25 6.77 -51.93 -0.35 0.90 16 32 H 0.05 0.93 7.10 -51.93 -0.37 0.56 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.69 7.24 -51.93 -0.38 0.32 16 37 H 0.13 1.90 7.81 -52.48 -0.41 1.49 16 38 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 1.29 8.02 -52.49 -0.42 0.87 16 42 H 0.07 1.43 5.98 -51.93 -0.31 1.12 16 43 H 0.07 1.25 7.49 -51.93 -0.39 0.86 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -30.05 338.88 -9.75 -39.80 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -5.83 Total: 10.75 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -2.98 Total: -16.24 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.36 Total: -35.15 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.66 Total: -20.32 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.05 -9.75 -39.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929528457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.246 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds