Wall clock time and date at job start Tue Mar 31 2020 07:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99789 * 2 1 4 4 H 1.48500 * 109.47126 * 240.00053 * 3 2 1 5 5 H 1.48500 * 109.47232 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47415 * 120.00370 * 3 2 1 7 7 C 1.37877 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00090 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99997 * 359.72723 * 7 2 1 10 10 H 1.08994 * 109.47056 * 300.00015 * 9 7 2 11 11 O 1.42903 * 109.47044 * 59.99328 * 9 7 2 12 12 C 1.52997 * 109.47327 * 179.97438 * 9 7 2 13 13 N 1.46893 * 109.47140 * 173.87800 * 12 9 7 14 14 C 1.44011 * 111.00160 * 307.21032 * 13 12 9 15 15 C 1.54613 * 112.48706 * 217.17525 * 14 13 12 16 16 C 1.54574 * 110.90909 * 319.61323 * 15 14 13 17 17 O 1.39913 * 113.21771 * 319.28605 * 16 15 14 18 18 C 1.44512 * 112.80944 * 94.89519 * 17 16 15 19 19 H 1.08999 * 109.06320 * 40.88724 * 18 17 16 20 20 C 1.50703 * 109.11288 * 159.97933 * 18 17 16 21 21 C 1.38233 * 120.00031 * 41.53213 * 20 18 17 22 22 C 1.38235 * 119.99962 * 179.81109 * 21 20 18 23 23 C 1.38232 * 119.99923 * 0.40122 * 22 21 20 24 24 C 1.38232 * 120.00098 * 359.85477 * 23 22 21 25 25 C 1.38236 * 119.99833 * 221.81021 * 20 18 17 26 26 C 1.46263 * 111.31069 * 280.44763 * 18 17 16 27 27 H 0.97001 * 120.00237 * 359.97438 * 1 2 3 28 28 H 0.96702 * 113.99687 * 60.00733 * 11 9 7 29 29 H 1.09003 * 109.47110 * 293.87589 * 12 9 7 30 30 H 1.08998 * 109.47103 * 53.87109 * 12 9 7 31 31 H 1.09003 * 108.88243 * 337.95294 * 14 13 12 32 32 H 1.09006 * 108.87970 * 96.40018 * 14 13 12 33 33 H 1.09002 * 109.19572 * 199.24364 * 15 14 13 34 34 H 1.09004 * 109.19017 * 79.98011 * 15 14 13 35 35 H 1.08996 * 108.73676 * 198.32228 * 16 15 14 36 36 H 1.08995 * 108.73635 * 80.24513 * 16 15 14 37 37 H 1.08003 * 120.00221 * 0.02562 * 21 20 18 38 38 H 1.08006 * 120.00013 * 180.23397 * 22 21 20 39 39 H 1.08002 * 120.00174 * 179.83527 * 23 22 21 40 40 H 1.08002 * 119.99825 * 179.97438 * 24 23 22 41 41 H 1.07995 * 120.00134 * 359.97438 * 25 20 18 42 42 H 1.08995 * 108.91540 * 298.76401 * 26 18 17 43 43 H 1.09000 * 108.84337 * 180.16834 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0073 10 1 0.6282 -2.5544 0.9000 11 8 0.4246 -2.5781 -1.1558 12 6 2.2453 -3.6620 0.0059 13 7 1.5175 -4.9286 0.1602 14 6 0.6506 -4.8891 1.3094 15 6 0.5925 -6.2433 2.0532 16 6 0.5501 -7.4208 1.0527 17 8 -0.2741 -7.1771 -0.0513 18 6 0.4522 -6.6629 -1.1899 19 1 1.3984 -7.1965 -1.2792 20 6 -0.3617 -6.8899 -2.4378 21 6 -1.7265 -6.6713 -2.4222 22 6 -2.4724 -6.8758 -3.5679 23 6 -1.8548 -7.3069 -4.7270 24 6 -0.4907 -7.5306 -4.7412 25 6 0.2558 -7.3223 -3.5966 26 6 0.7208 -5.2323 -1.0472 27 1 -0.4850 0.8400 0.0004 28 1 0.9133 -2.5351 -1.9891 29 1 2.7934 -3.6704 -0.9363 30 1 2.9457 -3.5423 0.8324 31 1 1.0112 -4.1241 1.9971 32 1 -0.3548 -4.6221 0.9838 33 1 -0.3006 -6.2713 2.6775 34 1 1.4744 -6.3426 2.6862 35 1 0.1871 -8.3081 1.5714 36 1 1.5621 -7.6153 0.6978 37 1 -2.2096 -6.3374 -1.5158 38 1 -3.5383 -6.7013 -3.5568 39 1 -2.4379 -7.4692 -5.6215 40 1 -0.0082 -7.8678 -5.6467 41 1 1.3215 -7.4971 -3.6077 42 1 -0.2279 -4.6989 -0.9877 43 1 1.2654 -4.8869 -1.9259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929528457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:54 Heat of formation + Delta-G solvation = -79.444344 kcal Electronic energy + Delta-G solvation = -24224.374584 eV Core-core repulsion = 20847.773658 eV Total energy + Delta-G solvation = -3376.600926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30027 -39.69818 -38.44797 -36.17337 -34.51063 -34.23439 -32.03538 -31.72189 -30.59021 -28.51945 -27.19713 -25.86197 -23.80058 -23.39938 -22.75675 -21.72003 -20.83309 -19.14884 -18.04724 -17.63588 -16.96439 -16.83547 -16.66739 -16.33199 -16.16340 -15.64311 -15.43018 -15.24436 -14.92211 -14.63207 -14.20841 -14.14587 -14.02547 -13.55982 -13.25441 -13.15103 -12.96549 -12.85595 -12.69750 -12.38954 -12.23236 -12.06385 -11.94966 -11.83817 -11.53129 -11.32915 -11.27812 -10.74839 -10.65889 -10.41898 -9.77478 -9.64962 -9.02752 -8.13998 -6.42482 0.43342 0.54989 1.38248 1.39466 1.47682 2.36227 2.75718 2.85551 3.09612 3.16889 3.85228 3.93794 4.04446 4.10460 4.16187 4.20788 4.25942 4.28848 4.33561 4.36445 4.48361 4.57088 4.63257 4.70173 4.74423 4.77323 4.93631 5.00624 5.07260 5.09082 5.12466 5.16467 5.20665 5.24539 5.54474 5.59096 5.63889 5.65720 5.70480 5.92336 6.13900 6.18535 6.20215 6.40884 6.70317 7.29426 7.48284 8.87559 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.004702 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.397200 B = 5953.382046 C = 6997.822927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.026 3.974 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.587 4.587 8 H 0.062 0.938 9 C 0.202 3.798 10 H 0.021 0.979 11 O -0.573 6.573 12 C 0.042 3.958 13 N -0.518 5.518 14 C 0.060 3.940 15 C -0.133 4.133 16 C 0.069 3.931 17 O -0.384 6.384 18 C 0.143 3.857 19 H 0.082 0.918 20 C -0.096 4.096 21 C -0.111 4.111 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.116 4.116 26 C 0.047 3.953 27 H 0.260 0.740 28 H 0.351 0.649 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.010 0.990 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.140 0.860 42 H 0.033 0.967 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.991 -17.050 -5.626 17.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.176 4.176 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.625 4.625 8 H 0.080 0.920 9 C 0.143 3.857 10 H 0.039 0.961 11 O -0.377 6.377 12 C -0.086 4.086 13 N -0.239 5.239 14 C -0.069 4.069 15 C -0.171 4.171 16 C -0.009 4.009 17 O -0.303 6.303 18 C 0.086 3.914 19 H 0.100 0.900 20 C -0.097 4.097 21 C -0.129 4.129 22 C -0.151 4.151 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.134 4.134 26 C -0.081 4.081 27 H 0.069 0.931 28 H 0.195 0.805 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.152 0.848 39 H 0.165 0.835 40 H 0.169 0.831 41 H 0.158 0.842 42 H 0.051 0.949 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.526 -17.411 -5.075 18.143 hybrid contribution 0.148 2.287 -0.007 2.291 sum 0.674 -15.124 -5.082 15.970 Atomic orbital electron populations 1.70221 1.07762 1.27319 1.48547 1.25907 0.95401 1.02959 0.93358 0.85634 0.78357 0.78531 0.79187 1.19074 1.21277 1.19280 1.22038 0.93636 0.92762 1.54105 0.91987 1.19905 0.88541 0.92273 0.84978 0.96138 1.86562 1.39124 1.96265 1.15779 1.22888 0.96267 0.87329 1.02087 1.61917 1.26992 1.32254 1.02778 1.21785 0.94163 0.97862 0.93121 1.22689 1.02608 0.93697 0.98134 1.22243 0.95146 0.96458 0.87013 1.87724 1.36131 1.84309 1.22152 1.20003 0.93656 0.93640 0.84091 0.90037 1.19742 0.94344 1.01039 0.94566 1.21041 0.94136 0.99235 0.98519 1.21406 1.00755 0.99939 0.93019 1.21514 0.95448 0.98607 0.98401 1.21453 0.94252 0.99830 0.98577 1.21233 1.00923 0.98985 0.92232 1.21521 0.97140 0.95989 0.93446 0.93142 0.80453 0.90711 0.90780 0.93364 0.97137 0.91277 0.89638 0.88781 0.92244 0.87717 0.84800 0.83484 0.83116 0.84231 0.94911 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.54 12.83 21.45 0.28 -54.27 16 2 C 0.03 1.46 5.40 84.65 0.46 1.92 16 3 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.59 -32.01 8.76 25.60 0.22 -31.78 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.20 10.19 2.53 29.85 0.08 10.26 16 10 H 0.02 1.20 6.33 -2.39 -0.02 1.19 16 11 O -0.57 -29.52 9.98 -148.98 -1.49 -31.01 16 12 C 0.04 1.70 4.89 86.30 0.42 2.13 16 13 N -0.52 -18.65 4.48 -910.60 -4.08 -22.73 16 14 C 0.06 2.23 3.98 87.39 0.35 2.58 16 15 C -0.13 -3.72 6.52 31.68 0.21 -3.52 16 16 C 0.07 1.78 6.20 72.52 0.45 2.23 16 17 O -0.38 -12.00 9.39 -139.91 -1.31 -13.31 16 18 C 0.14 4.28 2.52 27.77 0.07 4.35 16 19 H 0.08 2.18 7.29 -2.39 -0.02 2.16 16 20 C -0.10 -2.73 4.89 -19.86 -0.10 -2.83 16 21 C -0.11 -3.30 9.27 22.27 0.21 -3.10 16 22 C -0.13 -3.27 10.05 22.27 0.22 -3.04 16 23 C -0.12 -2.48 10.05 22.27 0.22 -2.26 16 24 C -0.12 -2.44 10.05 22.27 0.22 -2.21 16 25 C -0.12 -2.67 9.66 22.27 0.22 -2.46 16 26 C 0.05 1.65 2.95 84.05 0.25 1.90 16 27 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 28 H 0.35 16.26 8.98 -74.06 -0.67 15.59 16 29 H 0.07 2.84 7.82 -2.39 -0.02 2.82 16 30 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.05 1.93 6.77 -2.39 -0.02 1.91 16 32 H 0.01 0.45 7.10 -2.38 -0.02 0.43 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.06 1.45 7.24 -2.39 -0.02 1.44 16 37 H 0.10 3.44 7.81 -2.91 -0.02 3.42 16 38 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 41 H 0.14 2.60 8.02 -2.91 -0.02 2.58 16 42 H 0.03 1.41 5.98 -2.39 -0.01 1.40 16 43 H 0.07 2.54 7.49 -2.39 -0.02 2.52 16 Total: -1.00 -66.56 338.88 -0.75 -67.30 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: 0.33 Total: 34.40 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 3.50 Total: -25.82 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -3.80 Total: -77.00 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -2.80 Total: -44.32 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -66.56 -0.75 -67.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929528457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.140 kcal (2) G-P(sol) polarization free energy of solvation -66.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds