Wall clock time and date at job start Tue Mar 31 2020 07:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99516 * 2 1 4 4 H 1.48499 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47212 * 299.99820 * 3 2 1 6 6 H 1.48500 * 109.47141 * 60.00087 * 3 2 1 7 7 C 1.37876 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99786 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99850 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47251 * 299.99933 * 9 7 2 11 11 O 1.42895 * 109.47409 * 60.00163 * 9 7 2 12 12 C 1.53000 * 109.46813 * 179.97438 * 9 7 2 13 13 N 1.46901 * 109.47424 * 179.97438 * 12 9 7 14 14 C 1.46907 * 111.00151 * 283.26310 * 13 12 9 15 15 C 1.52999 * 109.47145 * 163.48130 * 14 13 12 16 16 O 1.42894 * 109.47397 * 294.08892 * 15 14 13 17 17 C 1.46891 * 111.00652 * 159.30085 * 13 12 9 18 18 H 1.08995 * 110.27231 * 166.38110 * 17 13 12 19 19 C 1.54345 * 110.30669 * 288.56804 * 17 13 12 20 20 C 1.54340 * 102.39683 * 145.26462 * 19 17 13 21 21 C 1.51371 * 105.16967 * 333.65600 * 20 19 17 22 22 C 1.38496 * 130.38565 * 197.18746 * 21 20 19 23 23 C 1.38109 * 120.20895 * 180.02562 * 22 21 20 24 24 C 1.38244 * 119.93726 * 359.97438 * 23 22 21 25 25 C 1.38104 * 119.93748 * 359.97438 * 24 23 22 26 26 C 1.38213 * 109.76090 * 17.18353 * 21 20 19 27 27 H 0.97004 * 120.00725 * 359.97438 * 1 2 3 28 28 H 0.96704 * 114.00058 * 59.99389 * 11 9 7 29 29 H 1.09001 * 109.46985 * 60.00109 * 12 9 7 30 30 H 1.08996 * 109.47496 * 300.00197 * 12 9 7 31 31 H 1.08998 * 109.47022 * 43.48052 * 14 13 12 32 32 H 1.08998 * 109.46590 * 283.47960 * 14 13 12 33 33 H 1.08997 * 109.46991 * 174.08556 * 15 14 13 34 34 H 1.09003 * 109.47117 * 54.09365 * 15 14 13 35 35 H 0.96700 * 114.00162 * 180.02562 * 16 15 14 36 36 H 1.09005 * 110.81582 * 263.49605 * 19 17 13 37 37 H 1.08997 * 110.82103 * 27.03640 * 19 17 13 38 38 H 1.08996 * 110.30552 * 214.72408 * 20 19 17 39 39 H 1.09010 * 110.38444 * 92.61527 * 20 19 17 40 40 H 1.07999 * 119.89616 * 359.97438 * 22 21 20 41 41 H 1.08003 * 120.02707 * 180.02562 * 23 22 21 42 42 H 1.07997 * 120.03538 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.89642 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4300 -2.5751 -1.1665 12 6 2.2454 -3.6619 0.0005 13 7 1.5111 -4.9342 0.0012 14 6 0.9759 -5.2325 1.3363 15 6 -0.1028 -6.3118 1.2239 16 8 -1.2189 -5.7957 0.4961 17 6 2.3587 -6.0316 -0.4835 18 1 1.8982 -6.9931 -0.2566 19 6 2.5963 -5.8944 -2.0024 20 6 4.0391 -6.4189 -2.1609 21 6 4.7002 -6.1704 -0.8220 22 6 6.0406 -6.1414 -0.4747 23 6 6.4149 -5.8914 0.8310 24 6 5.4493 -5.6689 1.7949 25 6 4.1122 -5.6964 1.4503 26 6 3.7348 -5.9479 0.1417 27 1 -0.4851 0.8400 0.0004 28 1 0.9225 -2.5299 -1.9975 29 1 2.8721 -3.6041 0.8905 30 1 2.8721 -3.6042 -0.8894 31 1 0.5423 -4.3287 1.7642 32 1 1.7808 -5.5889 1.9790 33 1 -0.4255 -6.6083 2.2219 34 1 0.3029 -7.1779 0.7011 35 1 -1.9429 -6.4273 0.3863 36 1 1.8951 -6.5138 -2.5617 37 1 2.5268 -4.8518 -2.3127 38 1 4.5573 -5.8692 -2.9465 39 1 4.0327 -7.4852 -2.3873 40 1 6.7955 -6.3155 -1.2271 41 1 7.4611 -5.8690 1.0985 42 1 5.7402 -5.4736 2.8165 43 1 3.3584 -5.5221 2.2039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929799791.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:34 Heat of formation + Delta-G solvation = -59.569426 kcal Electronic energy + Delta-G solvation = -24449.983607 eV Core-core repulsion = 21074.244522 eV Total energy + Delta-G solvation = -3375.739085 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45508 -37.53246 -36.06244 -35.28862 -33.96402 -31.96336 -30.74099 -29.35000 -28.83831 -27.82072 -25.87176 -23.85144 -22.56380 -21.80713 -20.84881 -20.61647 -19.24080 -17.09867 -16.92136 -16.28383 -15.70047 -15.25524 -15.03617 -14.70737 -14.53282 -14.23503 -14.02096 -13.49238 -13.26943 -13.02635 -12.83515 -12.69095 -12.47412 -12.19376 -12.13698 -11.53164 -11.28375 -11.08940 -10.96109 -10.90481 -10.84213 -10.73669 -10.70726 -10.49781 -10.11441 -9.93201 -9.61825 -8.89100 -8.65647 -8.48872 -8.39217 -7.97542 -7.44402 -5.90307 -4.08518 1.47444 1.49994 3.31298 3.39358 3.42946 3.85740 4.28993 4.49598 4.55551 4.63746 4.83342 5.08360 5.10702 5.17181 5.29649 5.36792 5.38083 5.47067 5.54285 5.58134 5.63856 5.72885 5.79147 5.87764 5.98387 6.11471 6.15051 6.23428 6.25155 6.33692 6.42751 6.51618 6.57010 6.62670 6.72564 6.79093 6.97777 7.11318 7.62360 7.70759 7.88394 8.02402 8.08653 8.32608 8.96329 9.58403 9.77356 11.13380 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012734 B = 0.006046 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.369439 B = 4629.728520 C = 5769.989476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.080 3.920 3 Si 0.884 3.116 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.572 4.572 8 H 0.052 0.948 9 C 0.242 3.758 10 H 0.051 0.949 11 O -0.547 6.547 12 C 0.034 3.966 13 N -0.500 5.500 14 C 0.045 3.955 15 C 0.086 3.914 16 O -0.544 6.544 17 C 0.117 3.883 18 H 0.086 0.914 19 C -0.106 4.106 20 C -0.083 4.083 21 C -0.094 4.094 22 C -0.111 4.111 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.105 4.105 26 C -0.114 4.114 27 H 0.258 0.742 28 H 0.337 0.663 29 H 0.029 0.971 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.364 0.636 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.423 -16.450 0.591 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.126 4.126 3 Si 0.712 3.288 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.611 4.611 8 H 0.071 0.929 9 C 0.184 3.816 10 H 0.068 0.932 11 O -0.348 6.348 12 C -0.093 4.093 13 N -0.221 5.221 14 C -0.083 4.083 15 C 0.007 3.993 16 O -0.347 6.347 17 C 0.008 3.992 18 H 0.104 0.896 19 C -0.144 4.144 20 C -0.120 4.120 21 C -0.094 4.094 22 C -0.129 4.129 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.123 4.123 26 C -0.116 4.116 27 H 0.068 0.932 28 H 0.179 0.821 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.208 0.792 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.726 -15.785 0.720 17.174 hybrid contribution 1.546 0.466 0.437 1.672 sum 8.271 -15.319 1.157 17.448 Atomic orbital electron populations 1.70108 1.05816 1.26052 1.47263 1.25009 0.94622 0.98887 0.94049 0.86693 0.80250 0.84240 0.77640 1.19829 1.20900 1.20971 1.21721 0.93061 0.91795 1.54494 0.92940 1.19247 0.87635 0.88207 0.86518 0.93166 1.86619 1.37314 1.96271 1.14608 1.23107 0.96958 0.89541 0.99694 1.62230 1.34726 1.01570 1.23583 1.22309 0.95230 0.99853 0.90911 1.22151 0.87815 0.95540 0.93797 1.86823 1.28230 1.42151 1.77449 1.21461 0.87238 0.95965 0.94555 0.89619 1.22331 0.94414 1.03038 0.94640 1.21091 0.95793 1.01098 0.94049 1.20591 0.93143 0.99344 0.96350 1.20584 0.94745 1.01342 0.96269 1.20965 0.99109 1.00962 0.93111 1.21010 0.92844 1.00830 0.99357 1.20847 0.96094 0.99942 0.95447 1.21496 0.97878 0.98669 0.93594 0.93177 0.82086 0.95245 0.92025 0.89340 0.93719 0.94419 0.94538 0.79161 0.90507 0.89576 0.90816 0.90585 0.86644 0.86298 0.86225 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.12 12.84 55.43 0.71 -25.41 16 2 C 0.08 2.31 5.40 -17.82 -0.10 2.22 16 3 Si 0.88 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.57 -16.20 8.76 -34.44 -0.30 -16.50 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.24 6.36 2.90 -27.89 -0.08 6.28 16 10 H 0.05 1.48 6.81 -51.93 -0.35 1.12 16 11 O -0.55 -14.91 12.60 -35.23 -0.44 -15.35 16 12 C 0.03 0.73 3.26 -3.82 -0.01 0.71 16 13 N -0.50 -9.10 4.15 -226.79 -0.94 -10.04 16 14 C 0.04 0.76 5.01 -3.82 -0.02 0.74 16 15 C 0.09 1.22 7.21 37.16 0.27 1.49 16 16 O -0.54 -9.04 13.62 -35.23 -0.48 -9.52 16 17 C 0.12 1.77 2.77 -67.83 -0.19 1.58 16 18 H 0.09 1.20 6.31 -51.93 -0.33 0.88 16 19 C -0.11 -1.49 6.46 -25.32 -0.16 -1.65 16 20 C -0.08 -1.00 6.77 -26.85 -0.18 -1.19 16 21 C -0.09 -1.31 6.14 -104.21 -0.64 -1.95 16 22 C -0.11 -1.43 10.04 -39.53 -0.40 -1.83 16 23 C -0.12 -1.53 10.05 -39.63 -0.40 -1.93 16 24 C -0.12 -1.62 10.05 -39.63 -0.40 -2.02 16 25 C -0.11 -1.55 8.03 -39.54 -0.32 -1.87 16 26 C -0.11 -1.72 4.45 -104.20 -0.46 -2.19 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.34 8.29 9.04 45.56 0.41 8.70 16 29 H 0.03 0.64 6.51 -51.93 -0.34 0.30 16 30 H 0.06 1.33 6.31 -51.93 -0.33 1.00 16 31 H 0.09 1.76 6.59 -51.93 -0.34 1.42 16 32 H 0.05 0.67 4.82 -51.93 -0.25 0.42 16 33 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.04 0.46 6.45 -51.93 -0.34 0.13 16 35 H 0.36 4.04 9.12 45.56 0.42 4.45 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.39 6.62 -51.93 -0.34 1.04 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 42 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 43 H 0.12 1.72 5.49 -52.48 -0.29 1.43 16 LS Contribution 338.22 15.07 5.10 5.10 Total: -1.00 -33.93 338.22 -9.05 -42.97 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -4.58 Total: 13.63 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -3.39 Total: -18.09 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.23 Total: -35.45 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.92 Total: -24.87 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.93 -9.05 -42.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929799791.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.596 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds