Wall clock time and date at job start Tue Mar 31 2020 07:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99516 * 2 1 4 4 H 1.48499 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47212 * 299.99820 * 3 2 1 6 6 H 1.48500 * 109.47141 * 60.00087 * 3 2 1 7 7 C 1.37876 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99786 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99850 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47251 * 299.99933 * 9 7 2 11 11 O 1.42895 * 109.47409 * 60.00163 * 9 7 2 12 12 C 1.53000 * 109.46813 * 179.97438 * 9 7 2 13 13 N 1.46901 * 109.47424 * 179.97438 * 12 9 7 14 14 C 1.46907 * 111.00151 * 283.26310 * 13 12 9 15 15 C 1.52999 * 109.47145 * 163.48130 * 14 13 12 16 16 O 1.42894 * 109.47397 * 294.08892 * 15 14 13 17 17 C 1.46891 * 111.00652 * 159.30085 * 13 12 9 18 18 H 1.08995 * 110.27231 * 166.38110 * 17 13 12 19 19 C 1.54345 * 110.30669 * 288.56804 * 17 13 12 20 20 C 1.54340 * 102.39683 * 145.26462 * 19 17 13 21 21 C 1.51371 * 105.16967 * 333.65600 * 20 19 17 22 22 C 1.38496 * 130.38565 * 197.18746 * 21 20 19 23 23 C 1.38109 * 120.20895 * 180.02562 * 22 21 20 24 24 C 1.38244 * 119.93726 * 359.97438 * 23 22 21 25 25 C 1.38104 * 119.93748 * 359.97438 * 24 23 22 26 26 C 1.38213 * 109.76090 * 17.18353 * 21 20 19 27 27 H 0.97004 * 120.00725 * 359.97438 * 1 2 3 28 28 H 0.96704 * 114.00058 * 59.99389 * 11 9 7 29 29 H 1.09001 * 109.46985 * 60.00109 * 12 9 7 30 30 H 1.08996 * 109.47496 * 300.00197 * 12 9 7 31 31 H 1.08998 * 109.47022 * 43.48052 * 14 13 12 32 32 H 1.08998 * 109.46590 * 283.47960 * 14 13 12 33 33 H 1.08997 * 109.46991 * 174.08556 * 15 14 13 34 34 H 1.09003 * 109.47117 * 54.09365 * 15 14 13 35 35 H 0.96700 * 114.00162 * 180.02562 * 16 15 14 36 36 H 1.09005 * 110.81582 * 263.49605 * 19 17 13 37 37 H 1.08997 * 110.82103 * 27.03640 * 19 17 13 38 38 H 1.08996 * 110.30552 * 214.72408 * 20 19 17 39 39 H 1.09010 * 110.38444 * 92.61527 * 20 19 17 40 40 H 1.07999 * 119.89616 * 359.97438 * 22 21 20 41 41 H 1.08003 * 120.02707 * 180.02562 * 23 22 21 42 42 H 1.07997 * 120.03538 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.89642 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4300 -2.5751 -1.1665 12 6 2.2454 -3.6619 0.0005 13 7 1.5111 -4.9342 0.0012 14 6 0.9759 -5.2325 1.3363 15 6 -0.1028 -6.3118 1.2239 16 8 -1.2189 -5.7957 0.4961 17 6 2.3587 -6.0316 -0.4835 18 1 1.8982 -6.9931 -0.2566 19 6 2.5963 -5.8944 -2.0024 20 6 4.0391 -6.4189 -2.1609 21 6 4.7002 -6.1704 -0.8220 22 6 6.0406 -6.1414 -0.4747 23 6 6.4149 -5.8914 0.8310 24 6 5.4493 -5.6689 1.7949 25 6 4.1122 -5.6964 1.4503 26 6 3.7348 -5.9479 0.1417 27 1 -0.4851 0.8400 0.0004 28 1 0.9225 -2.5299 -1.9975 29 1 2.8721 -3.6041 0.8905 30 1 2.8721 -3.6042 -0.8894 31 1 0.5423 -4.3287 1.7642 32 1 1.7808 -5.5889 1.9790 33 1 -0.4255 -6.6083 2.2219 34 1 0.3029 -7.1779 0.7011 35 1 -1.9429 -6.4273 0.3863 36 1 1.8951 -6.5138 -2.5617 37 1 2.5268 -4.8518 -2.3127 38 1 4.5573 -5.8692 -2.9465 39 1 4.0327 -7.4852 -2.3873 40 1 6.7955 -6.3155 -1.2271 41 1 7.4611 -5.8690 1.0985 42 1 5.7402 -5.4736 2.8165 43 1 3.3584 -5.5221 2.2039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929799791.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:31 Heat of formation + Delta-G solvation = -86.114108 kcal Electronic energy + Delta-G solvation = -24451.134671 eV Core-core repulsion = 21074.244522 eV Total energy + Delta-G solvation = -3376.890149 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.58563 -38.86674 -37.52888 -36.82379 -35.32002 -34.19961 -31.82236 -30.98271 -29.96029 -29.25307 -27.46673 -25.51011 -23.60734 -23.19551 -22.43027 -21.70234 -20.61002 -18.99814 -18.30392 -17.55365 -16.98306 -16.66045 -16.42157 -16.19993 -15.92021 -15.83471 -15.61472 -14.89498 -14.76019 -14.36712 -14.28785 -13.87121 -13.76149 -13.60560 -13.36520 -13.12644 -12.88240 -12.74599 -12.58997 -12.41728 -12.20893 -12.06520 -11.99908 -11.89336 -11.72383 -11.45355 -11.01229 -10.76812 -10.66291 -10.05578 -9.69217 -9.46915 -8.91403 -8.11699 -6.38566 0.45223 0.47790 1.37234 1.37853 1.50562 2.37422 2.82511 3.01438 3.13503 3.46937 3.57177 3.73137 4.03510 4.08555 4.15715 4.17361 4.29150 4.34326 4.36163 4.40279 4.47985 4.58316 4.63089 4.69160 4.72179 4.85784 4.87751 4.94900 4.94962 5.06474 5.15499 5.16652 5.27244 5.34229 5.56424 5.60582 5.61603 5.71621 5.79052 6.05170 6.12570 6.25655 6.39830 6.75900 7.12420 7.35684 7.67613 8.92649 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012734 B = 0.006046 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.369439 B = 4629.728520 C = 5769.989476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.026 3.974 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.587 4.587 8 H 0.053 0.947 9 C 0.245 3.755 10 H 0.009 0.991 11 O -0.564 6.564 12 C 0.065 3.935 13 N -0.510 5.510 14 C 0.041 3.959 15 C 0.089 3.911 16 O -0.581 6.581 17 C 0.117 3.883 18 H 0.101 0.899 19 C -0.107 4.107 20 C -0.074 4.074 21 C -0.105 4.105 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.132 4.132 25 C -0.125 4.125 26 C -0.135 4.135 27 H 0.261 0.739 28 H 0.347 0.653 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.386 0.614 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.137 0.863 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.513 -17.637 0.085 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.625 4.625 8 H 0.071 0.929 9 C 0.187 3.813 10 H 0.026 0.974 11 O -0.366 6.366 12 C -0.063 4.063 13 N -0.232 5.232 14 C -0.087 4.087 15 C 0.011 3.989 16 O -0.387 6.387 17 C 0.009 3.991 18 H 0.118 0.882 19 C -0.145 4.145 20 C -0.111 4.111 21 C -0.106 4.106 22 C -0.135 4.135 23 C -0.141 4.141 24 C -0.150 4.150 25 C -0.143 4.143 26 C -0.137 4.137 27 H 0.070 0.930 28 H 0.190 0.810 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.234 0.766 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.155 0.845 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.819 -17.003 0.213 19.156 hybrid contribution 0.883 0.773 0.621 1.327 sum 9.702 -16.231 0.834 18.928 Atomic orbital electron populations 1.70253 1.07662 1.27176 1.48459 1.25895 0.95450 1.02832 0.93432 0.85537 0.79045 0.79278 0.77875 1.18908 1.20196 1.20338 1.22062 0.93194 0.93057 1.54197 0.92895 1.19060 0.87512 0.89999 0.84735 0.97356 1.86555 1.38267 1.96452 1.15341 1.22501 0.95145 0.89718 0.98965 1.62126 1.35221 1.01389 1.24485 1.22363 0.96623 0.99100 0.90575 1.22187 0.86587 0.94692 0.95386 1.86754 1.29700 1.44271 1.77984 1.21550 0.87248 0.95079 0.95222 0.88177 1.22329 0.96449 1.01842 0.93875 1.21078 0.94028 1.02595 0.93438 1.20897 0.93628 0.99255 0.96795 1.20941 0.94858 1.00564 0.97113 1.21350 1.00367 0.99616 0.92813 1.21300 0.92450 1.00587 1.00670 1.20957 0.96895 1.00988 0.95465 1.21505 0.97900 1.00175 0.94122 0.93032 0.81007 0.96140 0.92337 0.93523 0.91887 0.91802 0.92307 0.76579 0.88996 0.92252 0.89914 0.88139 0.84178 0.83539 0.84522 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.29 12.84 21.45 0.28 -56.01 16 2 C 0.03 1.53 5.40 84.66 0.46 1.99 16 3 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 4 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.59 -34.08 8.76 25.60 0.22 -33.86 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.25 13.47 2.90 29.85 0.09 13.56 16 10 H 0.01 0.54 6.81 -2.39 -0.02 0.53 16 11 O -0.56 -31.94 12.60 -148.98 -1.88 -33.82 16 12 C 0.06 2.85 3.26 86.30 0.28 3.13 16 13 N -0.51 -18.96 4.15 -871.44 -3.61 -22.57 16 14 C 0.04 1.43 5.01 86.30 0.43 1.87 16 15 C 0.09 2.48 7.21 71.98 0.52 3.00 16 16 O -0.58 -19.31 13.62 -148.98 -2.03 -21.34 16 17 C 0.12 3.46 2.77 44.84 0.12 3.59 16 18 H 0.10 2.63 6.31 -2.39 -0.02 2.62 16 19 C -0.11 -2.87 6.46 31.51 0.20 -2.67 16 20 C -0.07 -1.62 6.77 30.52 0.21 -1.41 16 21 C -0.11 -2.72 6.14 -19.60 -0.12 -2.84 16 22 C -0.12 -2.67 10.04 22.30 0.22 -2.45 16 23 C -0.12 -2.75 10.05 22.24 0.22 -2.52 16 24 C -0.13 -3.30 10.05 22.24 0.22 -3.07 16 25 C -0.12 -3.61 8.03 22.30 0.18 -3.43 16 26 C -0.14 -3.94 4.45 -19.59 -0.09 -4.02 16 27 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 28 H 0.35 17.66 9.04 -74.05 -0.67 16.99 16 29 H 0.02 0.92 6.51 -2.39 -0.02 0.91 16 30 H 0.06 2.58 6.31 -2.39 -0.02 2.57 16 31 H 0.05 1.99 6.59 -2.39 -0.02 1.98 16 32 H 0.06 1.93 4.82 -2.39 -0.01 1.91 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.37 6.45 -2.39 -0.02 1.36 16 35 H 0.39 8.31 9.12 -74.06 -0.68 7.64 16 36 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.06 1.91 6.62 -2.39 -0.02 1.89 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 42 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 43 H 0.11 3.27 5.49 -2.91 -0.02 3.26 16 Total: -1.00 -75.06 338.22 -2.34 -77.41 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: -0.30 Total: 38.37 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 3.18 Total: -29.15 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -3.34 Total: -78.59 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -3.91 Total: -55.15 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -75.06 -2.34 -77.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929799791.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.709 kcal (2) G-P(sol) polarization free energy of solvation -75.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds