Wall clock time and date at job start Tue Mar 31 2020 07:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99655 * 2 1 4 4 H 1.48498 * 109.47269 * 269.99609 * 3 2 1 5 5 H 1.48499 * 109.47150 * 29.99832 * 3 2 1 6 6 H 1.48501 * 109.47056 * 149.99734 * 3 2 1 7 7 C 1.37880 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99805 * 359.72551 * 7 2 1 10 10 H 1.08998 * 109.47349 * 300.00352 * 9 7 2 11 11 O 1.42903 * 109.47291 * 60.00273 * 9 7 2 12 12 C 1.52997 * 109.46978 * 179.97438 * 9 7 2 13 13 N 1.46897 * 109.47311 * 180.02562 * 12 9 7 14 14 C 1.46902 * 111.00406 * 173.71103 * 13 12 9 15 15 C 1.50705 * 109.53926 * 294.13339 * 14 13 12 16 16 C 1.38233 * 119.99982 * 154.54433 * 15 14 13 17 17 C 1.38239 * 120.00019 * 179.78326 * 16 15 14 18 18 C 1.38237 * 119.99846 * 0.44526 * 17 16 15 19 19 C 1.38241 * 119.99771 * 359.81069 * 18 17 16 20 20 C 1.38229 * 119.99983 * 359.97438 * 19 18 17 21 21 C 1.53173 * 109.54692 * 173.86919 * 14 13 12 22 22 C 1.53101 * 109.16005 * 297.10876 * 21 14 13 23 23 O 1.42906 * 109.41636 * 302.39419 * 22 21 14 24 24 C 1.42902 * 114.09767 * 61.15589 * 23 22 21 25 25 C 1.53092 * 109.41533 * 298.84422 * 24 23 22 26 26 H 0.96996 * 120.00002 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00033 * 59.99338 * 11 9 7 28 28 H 1.08998 * 109.47442 * 300.00386 * 12 9 7 29 29 H 1.09005 * 109.47254 * 59.99994 * 12 9 7 30 30 H 1.00906 * 110.99979 * 297.66211 * 13 12 9 31 31 H 1.07998 * 119.99873 * 0.02562 * 16 15 14 32 32 H 1.08003 * 119.99912 * 180.27489 * 17 16 15 33 33 H 1.07997 * 119.99962 * 179.82778 * 18 17 16 34 34 H 1.07996 * 119.99573 * 179.97438 * 19 18 17 35 35 H 1.08003 * 119.99585 * 180.02562 * 20 19 18 36 36 H 1.08992 * 109.52509 * 57.01247 * 21 14 13 37 37 H 1.08997 * 109.52603 * 177.20737 * 21 14 13 38 38 H 1.08993 * 109.48028 * 182.40828 * 22 21 14 39 39 H 1.09005 * 109.48989 * 62.37956 * 22 21 14 40 40 H 1.09001 * 109.48344 * 178.86315 * 24 23 22 41 41 H 1.09003 * 109.48974 * 58.83058 * 24 23 22 42 42 H 1.09003 * 109.52203 * 297.70356 * 25 24 23 43 43 H 1.09005 * 109.52479 * 177.51800 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0074 10 1 0.6281 -2.5543 0.9000 11 8 0.4248 -2.5782 -1.1558 12 6 2.2454 -3.6620 0.0059 13 7 1.5110 -4.9342 0.0119 14 6 2.4276 -6.0721 -0.1395 15 6 3.0639 -6.0285 -1.5049 16 6 4.2943 -6.6231 -1.7134 17 6 4.8758 -6.5871 -2.9670 18 6 4.2312 -5.9484 -4.0099 19 6 3.0032 -5.3492 -3.8000 20 6 2.4197 -5.3891 -2.5476 21 6 1.6503 -7.3817 0.0240 22 6 1.0734 -7.4502 1.4406 23 8 2.1352 -7.3464 2.3914 24 6 2.8674 -6.1215 2.3169 25 6 3.5163 -5.9997 0.9356 26 1 -0.4850 0.8400 -0.0004 27 1 0.9135 -2.5352 -1.9891 28 1 2.8680 -3.6066 -0.8870 29 1 2.8761 -3.6020 0.8929 30 1 0.9549 -5.0268 0.8489 31 1 4.7993 -7.1193 -0.8979 32 1 5.8351 -7.0555 -3.1309 33 1 4.6869 -5.9178 -4.9885 34 1 2.4999 -4.8499 -4.6146 35 1 1.4601 -4.9213 -2.3838 36 1 0.8381 -7.4163 -0.7020 37 1 2.3206 -8.2259 -0.1374 38 1 0.5552 -8.3994 1.5765 39 1 0.3721 -6.6288 1.5878 40 1 3.6417 -6.1135 3.0841 41 1 2.1898 -5.2825 2.4755 42 1 4.2244 -6.8159 0.7925 43 1 4.0387 -5.0458 0.8614 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929980075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:29 Heat of formation + Delta-G solvation = -87.529995 kcal Electronic energy + Delta-G solvation = -24527.171579 eV Core-core repulsion = 21150.220033 eV Total energy + Delta-G solvation = -3376.951546 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.66606 -39.44533 -38.04415 -36.44478 -34.22237 -33.02506 -32.28356 -31.49395 -30.94363 -29.41020 -26.45134 -25.40084 -24.70395 -23.26620 -22.47691 -22.34380 -20.00035 -18.90786 -18.09595 -17.38322 -17.01359 -16.68406 -16.65619 -16.27981 -16.11998 -15.65735 -15.48973 -15.17579 -15.08761 -14.52872 -14.43470 -14.07684 -13.71289 -13.52471 -13.33525 -13.19521 -13.09001 -12.84464 -12.70224 -12.52189 -12.34058 -12.07414 -11.99973 -11.85133 -11.70648 -11.21282 -11.02324 -10.72112 -10.50121 -10.07336 -9.69817 -9.49169 -9.20228 -8.13335 -6.38801 0.53361 0.62318 1.38876 1.39369 1.49779 2.37555 2.88392 2.96515 3.12292 3.20550 3.63279 3.79761 3.89140 4.00980 4.15571 4.22345 4.25516 4.29428 4.33413 4.40385 4.47916 4.58088 4.64264 4.66843 4.73994 4.74617 4.85076 4.85304 4.98440 5.05051 5.15743 5.17164 5.24257 5.30816 5.60431 5.64998 5.73670 5.75179 5.81709 6.06022 6.17270 6.21754 6.24213 6.48789 6.74674 7.35035 7.61398 8.90775 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013830 B = 0.005640 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.060046 B = 4963.283075 C = 6106.017731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.028 3.972 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.586 4.586 8 H 0.054 0.946 9 C 0.239 3.761 10 H 0.015 0.985 11 O -0.566 6.566 12 C 0.060 3.940 13 N -0.667 5.667 14 C 0.153 3.847 15 C -0.077 4.077 16 C -0.127 4.127 17 C -0.128 4.128 18 C -0.129 4.129 19 C -0.137 4.137 20 C -0.107 4.107 21 C -0.130 4.130 22 C 0.055 3.945 23 O -0.391 6.391 24 C 0.060 3.940 25 C -0.178 4.178 26 H 0.261 0.739 27 H 0.349 0.651 28 H 0.061 0.939 29 H 0.023 0.977 30 H 0.335 0.665 31 H 0.133 0.867 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.048 0.952 40 H 0.109 0.891 41 H 0.037 0.963 42 H 0.090 0.910 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.530 -16.030 -2.438 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.174 4.174 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.624 4.624 8 H 0.073 0.927 9 C 0.181 3.819 10 H 0.033 0.967 11 O -0.369 6.369 12 C -0.070 4.070 13 N -0.298 5.298 14 C 0.062 3.938 15 C -0.077 4.077 16 C -0.145 4.145 17 C -0.146 4.146 18 C -0.147 4.147 19 C -0.155 4.155 20 C -0.125 4.125 21 C -0.168 4.168 22 C -0.022 4.022 23 O -0.310 6.310 24 C -0.017 4.017 25 C -0.218 4.218 26 H 0.070 0.930 27 H 0.193 0.807 28 H 0.079 0.921 29 H 0.041 0.959 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.145 0.855 35 H 0.137 0.863 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.066 0.934 40 H 0.127 0.873 41 H 0.055 0.945 42 H 0.109 0.891 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.757 -16.087 -2.493 18.032 hybrid contribution 0.879 1.594 0.358 1.855 sum 8.636 -14.493 -2.135 17.005 Atomic orbital electron populations 1.70214 1.07532 1.27252 1.48453 1.25841 0.95432 1.02680 0.93467 0.85629 0.78753 0.79188 0.78429 1.19875 1.20833 1.19082 1.22007 0.93306 0.92924 1.54163 0.92741 1.19106 0.87624 0.90192 0.84963 0.96740 1.86503 1.38423 1.96421 1.15505 1.22438 0.95931 0.89343 0.99247 1.60558 1.24135 1.00712 1.44439 1.19822 0.91108 0.91519 0.91355 1.19734 0.94971 0.98564 0.94444 1.21240 0.94809 1.00355 0.98098 1.21375 1.00692 0.99885 0.92646 1.21421 0.95150 0.98009 1.00080 1.21415 0.96621 1.00226 0.97207 1.21237 1.00609 0.97983 0.92689 1.22168 1.00818 0.95745 0.98040 1.22764 0.88828 1.03204 0.87378 1.87894 1.47330 1.38503 1.57293 1.22599 0.95558 0.86273 0.97270 1.22904 0.99680 1.03393 0.95791 0.93038 0.80708 0.92073 0.95907 0.84536 0.84936 0.83886 0.84238 0.85479 0.86287 0.90180 0.89725 0.86517 0.93424 0.87269 0.94502 0.89134 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.75 12.83 21.45 0.28 -53.47 16 2 C 0.03 1.59 5.40 84.65 0.46 2.05 16 3 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.59 -32.16 8.76 25.60 0.22 -31.93 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.24 12.11 3.08 29.85 0.09 12.21 16 10 H 0.01 0.84 8.14 -2.39 -0.02 0.82 16 11 O -0.57 -29.41 12.59 -148.98 -1.88 -31.29 16 12 C 0.06 2.38 4.09 86.30 0.35 2.73 16 13 N -0.67 -22.44 4.73 -473.31 -2.24 -24.68 16 14 C 0.15 4.18 0.54 2.90 0.00 4.19 16 15 C -0.08 -2.14 4.02 -19.87 -0.08 -2.22 16 16 C -0.13 -3.03 9.15 22.27 0.20 -2.83 16 17 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 18 C -0.13 -2.91 10.05 22.27 0.22 -2.68 16 19 C -0.14 -3.64 10.05 22.27 0.22 -3.42 16 20 C -0.11 -3.27 8.04 22.27 0.18 -3.09 16 21 C -0.13 -3.05 5.11 30.69 0.16 -2.89 16 22 C 0.05 1.24 6.58 72.02 0.47 1.72 16 23 O -0.39 -9.97 10.77 -148.98 -1.60 -11.58 16 24 C 0.06 1.50 6.58 72.01 0.47 1.97 16 25 C -0.18 -4.51 3.97 30.68 0.12 -4.39 16 26 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.35 16.60 9.04 -74.06 -0.67 15.93 16 28 H 0.06 2.51 6.26 -2.39 -0.01 2.50 16 29 H 0.02 0.91 6.55 -2.38 -0.02 0.89 16 30 H 0.33 11.41 5.59 -89.69 -0.50 10.91 16 31 H 0.13 2.67 6.24 -2.91 -0.02 2.66 16 32 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 34 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.12 4.18 7.20 -2.91 -0.02 4.15 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.05 1.17 6.59 -2.38 -0.02 1.16 16 40 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.04 1.04 7.07 -2.39 -0.02 1.02 16 42 H 0.09 1.99 6.36 -2.39 -0.02 1.97 16 43 H 0.07 1.92 6.31 -2.38 -0.02 1.91 16 Total: -1.00 -64.17 335.38 -0.23 -64.40 By element: Atomic # 1 Polarization: 42.38 SS G_CDS: -0.14 Total: 42.24 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 3.33 Total: -31.14 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -1.96 Total: -78.15 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -3.48 Total: -42.86 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -64.17 -0.23 -64.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929980075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.128 kcal (2) G-P(sol) polarization free energy of solvation -64.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds