Wall clock time and date at job start Tue Mar 31 2020 07:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00357 * 2 1 4 4 H 1.48497 * 109.47397 * 240.00091 * 3 2 1 5 5 H 1.48502 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47125 * 120.00159 * 3 2 1 7 7 C 1.37880 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00185 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99967 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.46681 * 299.99768 * 9 7 2 11 11 O 1.42904 * 109.47143 * 60.00084 * 9 7 2 12 12 C 1.53000 * 109.46806 * 179.97438 * 9 7 2 13 13 N 1.46907 * 109.46934 * 180.02562 * 12 9 7 14 14 C 1.46895 * 110.99992 * 183.00804 * 13 12 9 15 15 C 1.52999 * 109.25133 * 53.99153 * 14 13 12 16 16 O 1.42902 * 109.46973 * 174.35368 * 15 14 13 17 17 C 1.52731 * 109.25620 * 294.52323 * 14 13 12 18 18 C 1.53335 * 108.37275 * 290.79494 * 17 14 13 19 19 C 1.52741 * 108.36948 * 290.07136 * 18 17 14 20 20 C 1.50631 * 110.59065 * 51.05866 * 19 18 17 21 21 C 1.38907 * 117.75344 * 162.52823 * 20 19 18 22 22 C 1.37927 * 120.55086 * 179.80858 * 21 20 19 23 23 C 1.38278 * 119.77051 * 359.95537 * 22 21 20 24 24 C 1.37924 * 119.76495 * 0.10630 * 23 22 21 25 25 C 1.37666 * 122.56521 * 342.46600 * 20 19 18 26 26 H 0.96994 * 119.99346 * 359.97438 * 1 2 3 27 27 H 0.96698 * 113.99845 * 59.99868 * 11 9 7 28 28 H 1.08992 * 109.47465 * 59.99739 * 12 9 7 29 29 H 1.08999 * 109.47411 * 299.99443 * 12 9 7 30 30 H 1.00900 * 110.99436 * 306.96532 * 13 12 9 31 31 H 1.08994 * 109.47329 * 294.35525 * 15 14 13 32 32 H 1.09008 * 109.47054 * 54.35841 * 15 14 13 33 33 H 0.96708 * 113.99643 * 180.02562 * 16 15 14 34 34 H 1.09008 * 109.68402 * 50.51131 * 17 14 13 35 35 H 1.08997 * 109.68858 * 171.03486 * 17 14 13 36 36 H 1.08996 * 109.68299 * 49.79204 * 18 17 14 37 37 H 1.08996 * 109.68243 * 170.35563 * 18 17 14 38 38 H 1.08998 * 109.25084 * 171.34329 * 19 18 17 39 39 H 1.08999 * 109.25420 * 290.77341 * 19 18 17 40 40 H 1.08001 * 119.72340 * 359.78041 * 21 20 19 41 41 H 1.07994 * 120.11895 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.11163 * 180.12427 * 23 22 21 43 43 H 1.08006 * 119.72488 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1666 12 6 2.2452 -3.6621 0.0005 13 7 1.5106 -4.9344 -0.0001 14 6 2.4334 -6.0750 0.0719 15 6 3.3563 -5.9018 1.2797 16 8 4.1665 -7.0692 1.4314 17 6 3.2747 -6.1235 -1.2019 18 6 2.3611 -6.5134 -2.3700 19 6 1.9567 -7.9761 -2.1973 20 6 1.4186 -8.2169 -0.8112 21 6 0.6730 -9.3693 -0.5979 22 6 0.1560 -9.6489 0.6499 23 6 0.3821 -8.7759 1.6982 24 6 1.1211 -7.6305 1.4881 25 6 1.6407 -7.3459 0.2315 26 1 -0.4849 0.8400 0.0004 27 1 0.9223 -2.5300 -1.9975 28 1 2.8719 -3.6044 0.8904 29 1 2.8718 -3.6045 -0.8895 30 1 0.8390 -4.9644 0.7523 31 1 3.9962 -5.0329 1.1264 32 1 2.7560 -5.7570 2.1780 33 1 4.7774 -7.0295 2.1800 34 1 3.7129 -5.1432 -1.3900 35 1 4.0664 -6.8644 -1.0912 36 1 1.4715 -5.8836 -2.3664 37 1 2.8958 -6.3890 -3.3116 38 1 1.1885 -8.2254 -2.9294 39 1 2.8273 -8.6114 -2.3603 40 1 0.4962 -10.0518 -1.4160 41 1 -0.4231 -10.5467 0.8078 42 1 -0.0184 -8.9904 2.6779 43 1 1.2977 -6.9493 2.3074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930325604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:19 Heat of formation + Delta-G solvation = -77.732474 kcal Electronic energy + Delta-G solvation = -24244.618854 eV Core-core repulsion = 20868.092161 eV Total energy + Delta-G solvation = -3376.526694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.44847 -37.63876 -36.13041 -35.43042 -33.97674 -32.09380 -31.18699 -30.07129 -28.79262 -27.22631 -25.81452 -24.40476 -22.77076 -22.51697 -20.93739 -20.25015 -18.64926 -17.44673 -16.82676 -16.60989 -15.72529 -15.32864 -14.70255 -14.63480 -14.56627 -14.47477 -13.85158 -13.73266 -13.52379 -13.34301 -13.07653 -12.76384 -12.45909 -12.19980 -11.97781 -11.65014 -11.48773 -11.33393 -11.20195 -10.92034 -10.86180 -10.81886 -10.62613 -10.31680 -10.12508 -9.97217 -9.73663 -9.00488 -8.66372 -8.58462 -8.42910 -8.09204 -7.77860 -6.01631 -4.20526 1.54719 1.55122 3.27220 3.33116 3.34222 3.89131 4.25411 4.36975 4.66698 4.72993 4.91014 5.01613 5.07407 5.14005 5.25996 5.28304 5.38577 5.47807 5.50080 5.53467 5.63955 5.74897 5.87390 6.02912 6.07891 6.10231 6.16018 6.18490 6.21011 6.25126 6.39316 6.49674 6.63198 6.65614 6.73781 6.84473 6.90203 7.16836 7.50658 7.64332 7.67122 7.82502 7.88766 8.18363 8.83014 9.45158 9.61350 11.02404 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022773 B = 0.004139 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.243646 B = 6763.943720 C = 6821.815479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.236 3.764 10 H 0.050 0.950 11 O -0.554 6.554 12 C 0.026 3.974 13 N -0.654 5.654 14 C 0.157 3.843 15 C 0.047 3.953 16 O -0.563 6.563 17 C -0.101 4.101 18 C -0.116 4.116 19 C -0.078 4.078 20 C -0.060 4.060 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.128 4.128 24 C -0.110 4.110 25 C -0.038 4.038 26 H 0.261 0.739 27 H 0.344 0.656 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.338 0.662 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.371 0.629 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.122 -17.154 0.784 17.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.613 4.613 8 H 0.072 0.928 9 C 0.178 3.822 10 H 0.068 0.932 11 O -0.356 6.356 12 C -0.102 4.102 13 N -0.285 5.285 14 C 0.066 3.934 15 C -0.033 4.033 16 O -0.367 6.367 17 C -0.139 4.139 18 C -0.153 4.153 19 C -0.115 4.115 20 C -0.060 4.060 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.146 4.146 24 C -0.128 4.128 25 C -0.038 4.038 26 H 0.071 0.929 27 H 0.187 0.813 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.217 0.783 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.067 -17.287 0.028 17.759 hybrid contribution 1.565 1.293 1.346 2.436 sum 5.632 -15.994 1.374 17.013 Atomic orbital electron populations 1.70071 1.05909 1.26533 1.46796 1.25017 0.94670 0.99049 0.93837 0.86744 0.79724 0.83275 0.78649 1.20121 1.21182 1.20263 1.21583 0.93044 0.91565 1.55145 0.92812 1.19291 0.87721 0.88754 0.86459 0.93208 1.86561 1.37725 1.96282 1.15007 1.23075 0.97972 0.89652 0.99519 1.60854 1.15456 1.00750 1.51463 1.19729 0.90515 0.89528 0.93630 1.23175 0.93892 0.87852 0.98408 1.86532 1.55640 1.40656 1.53842 1.21556 0.97118 1.01773 0.93449 1.21497 1.01066 0.95475 0.97259 1.20474 1.00208 0.97904 0.92953 1.19574 0.97268 0.93970 0.95238 1.21085 0.99046 0.97151 0.97197 1.20966 1.00525 0.99490 0.93299 1.20952 0.99698 0.95103 0.98811 1.21106 0.97778 0.97321 0.96626 1.19221 0.97067 0.94867 0.92653 0.92920 0.81325 0.95671 0.91491 0.84290 0.92782 0.93926 0.78297 0.91293 0.91482 0.89440 0.92188 0.91139 0.91287 0.86572 0.86582 0.86569 0.86869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.18 12.84 55.43 0.71 -24.46 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.57 -15.43 8.76 -34.44 -0.30 -15.73 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.24 5.80 3.00 -27.88 -0.08 5.72 16 10 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 11 O -0.55 -14.18 12.59 -35.23 -0.44 -14.63 16 12 C 0.03 0.51 4.50 -3.82 -0.02 0.49 16 13 N -0.65 -11.37 5.40 -101.32 -0.55 -11.92 16 14 C 0.16 2.37 0.35 -132.93 -0.05 2.33 16 15 C 0.05 0.65 4.68 37.16 0.17 0.82 16 16 O -0.56 -7.23 12.46 -35.23 -0.44 -7.67 16 17 C -0.10 -1.48 4.65 -26.70 -0.12 -1.60 16 18 C -0.12 -1.59 5.96 -26.69 -0.16 -1.75 16 19 C -0.08 -0.98 5.67 -28.05 -0.16 -1.14 16 20 C -0.06 -0.85 5.74 -104.62 -0.60 -1.45 16 21 C -0.13 -1.61 9.61 -39.45 -0.38 -1.98 16 22 C -0.12 -1.50 10.05 -39.68 -0.40 -1.90 16 23 C -0.13 -1.61 10.05 -39.68 -0.40 -2.01 16 24 C -0.11 -1.54 8.67 -39.45 -0.34 -1.89 16 25 C -0.04 -0.56 4.45 -104.61 -0.47 -1.03 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.34 7.97 9.04 45.56 0.41 8.38 16 28 H 0.03 0.48 6.14 -51.93 -0.32 0.16 16 29 H 0.07 1.30 6.39 -51.93 -0.33 0.97 16 30 H 0.34 6.07 8.36 -39.29 -0.33 5.74 16 31 H 0.05 0.77 6.58 -51.93 -0.34 0.43 16 32 H 0.04 0.58 6.65 -51.92 -0.35 0.23 16 33 H 0.37 3.14 9.12 45.56 0.42 3.55 16 34 H 0.07 1.05 6.19 -51.92 -0.32 0.73 16 35 H 0.07 0.97 7.60 -51.93 -0.39 0.57 16 36 H 0.09 1.40 7.59 -51.93 -0.39 1.01 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.12 1.21 8.05 -52.49 -0.42 0.78 16 41 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.11 1.50 6.45 -52.48 -0.34 1.16 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -31.06 338.59 -8.82 -39.88 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -4.79 Total: 16.78 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -3.40 Total: -18.98 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.16 Total: -36.38 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.88 Total: -22.30 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.06 -8.82 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930325604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.848 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds