Wall clock time and date at job start Tue Mar 31 2020 07:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00357 * 2 1 4 4 H 1.48497 * 109.47397 * 240.00091 * 3 2 1 5 5 H 1.48502 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47125 * 120.00159 * 3 2 1 7 7 C 1.37880 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00185 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99967 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.46681 * 299.99768 * 9 7 2 11 11 O 1.42904 * 109.47143 * 60.00084 * 9 7 2 12 12 C 1.53000 * 109.46806 * 179.97438 * 9 7 2 13 13 N 1.46907 * 109.46934 * 180.02562 * 12 9 7 14 14 C 1.46895 * 110.99992 * 183.00804 * 13 12 9 15 15 C 1.52999 * 109.25133 * 53.99153 * 14 13 12 16 16 O 1.42902 * 109.46973 * 174.35368 * 15 14 13 17 17 C 1.52731 * 109.25620 * 294.52323 * 14 13 12 18 18 C 1.53335 * 108.37275 * 290.79494 * 17 14 13 19 19 C 1.52741 * 108.36948 * 290.07136 * 18 17 14 20 20 C 1.50631 * 110.59065 * 51.05866 * 19 18 17 21 21 C 1.38907 * 117.75344 * 162.52823 * 20 19 18 22 22 C 1.37927 * 120.55086 * 179.80858 * 21 20 19 23 23 C 1.38278 * 119.77051 * 359.95537 * 22 21 20 24 24 C 1.37924 * 119.76495 * 0.10630 * 23 22 21 25 25 C 1.37666 * 122.56521 * 342.46600 * 20 19 18 26 26 H 0.96994 * 119.99346 * 359.97438 * 1 2 3 27 27 H 0.96698 * 113.99845 * 59.99868 * 11 9 7 28 28 H 1.08992 * 109.47465 * 59.99739 * 12 9 7 29 29 H 1.08999 * 109.47411 * 299.99443 * 12 9 7 30 30 H 1.00900 * 110.99436 * 306.96532 * 13 12 9 31 31 H 1.08994 * 109.47329 * 294.35525 * 15 14 13 32 32 H 1.09008 * 109.47054 * 54.35841 * 15 14 13 33 33 H 0.96708 * 113.99643 * 180.02562 * 16 15 14 34 34 H 1.09008 * 109.68402 * 50.51131 * 17 14 13 35 35 H 1.08997 * 109.68858 * 171.03486 * 17 14 13 36 36 H 1.08996 * 109.68299 * 49.79204 * 18 17 14 37 37 H 1.08996 * 109.68243 * 170.35563 * 18 17 14 38 38 H 1.08998 * 109.25084 * 171.34329 * 19 18 17 39 39 H 1.08999 * 109.25420 * 290.77341 * 19 18 17 40 40 H 1.08001 * 119.72340 * 359.78041 * 21 20 19 41 41 H 1.07994 * 120.11895 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.11163 * 180.12427 * 23 22 21 43 43 H 1.08006 * 119.72488 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1666 12 6 2.2452 -3.6621 0.0005 13 7 1.5106 -4.9344 -0.0001 14 6 2.4334 -6.0750 0.0719 15 6 3.3563 -5.9018 1.2797 16 8 4.1665 -7.0692 1.4314 17 6 3.2747 -6.1235 -1.2019 18 6 2.3611 -6.5134 -2.3700 19 6 1.9567 -7.9761 -2.1973 20 6 1.4186 -8.2169 -0.8112 21 6 0.6730 -9.3693 -0.5979 22 6 0.1560 -9.6489 0.6499 23 6 0.3821 -8.7759 1.6982 24 6 1.1211 -7.6305 1.4881 25 6 1.6407 -7.3459 0.2315 26 1 -0.4849 0.8400 0.0004 27 1 0.9223 -2.5300 -1.9975 28 1 2.8719 -3.6044 0.8904 29 1 2.8718 -3.6045 -0.8895 30 1 0.8390 -4.9644 0.7523 31 1 3.9962 -5.0329 1.1264 32 1 2.7560 -5.7570 2.1780 33 1 4.7774 -7.0295 2.1800 34 1 3.7129 -5.1432 -1.3900 35 1 4.0664 -6.8644 -1.0912 36 1 1.4715 -5.8836 -2.3664 37 1 2.8958 -6.3890 -3.3116 38 1 1.1885 -8.2254 -2.9294 39 1 2.8273 -8.6114 -2.3603 40 1 0.4962 -10.0518 -1.4160 41 1 -0.4231 -10.5467 0.8078 42 1 -0.0184 -8.9904 2.6779 43 1 1.2977 -6.9493 2.3074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930325604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:17 Heat of formation + Delta-G solvation = -101.322319 kcal Electronic energy + Delta-G solvation = -24245.641787 eV Core-core repulsion = 20868.092161 eV Total energy + Delta-G solvation = -3377.549626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.53956 -38.83169 -37.66126 -36.68756 -35.26373 -34.20306 -32.45583 -31.09958 -30.15395 -28.84080 -26.88486 -26.15860 -23.81583 -23.75276 -22.40436 -21.56081 -19.84767 -18.85796 -18.49688 -17.71003 -16.92757 -16.64751 -16.42769 -16.12005 -15.85090 -15.62990 -15.25943 -15.18454 -14.91922 -14.56289 -14.30257 -14.05915 -13.81553 -13.23380 -13.20325 -13.16914 -12.90180 -12.76444 -12.66435 -12.55146 -12.50689 -12.18754 -12.02901 -11.75175 -11.36419 -11.13433 -11.01232 -10.77584 -10.68936 -10.07977 -9.68247 -9.42769 -9.16318 -8.12201 -6.38283 0.54040 0.55940 1.41377 1.42603 1.50771 2.39049 2.86035 3.13721 3.21004 3.48312 3.58743 3.84566 3.98761 4.02659 4.20304 4.26217 4.30648 4.32846 4.39357 4.44180 4.48838 4.55546 4.62391 4.68107 4.75025 4.88504 4.89838 5.04870 5.08747 5.12774 5.20064 5.22755 5.38113 5.56891 5.60986 5.67165 5.67841 5.77295 5.87097 6.03649 6.16661 6.23357 6.41521 6.75102 6.81852 7.36155 7.63326 8.91980 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022773 B = 0.004139 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.243646 B = 6763.943720 C = 6821.815479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.587 4.587 8 H 0.060 0.940 9 C 0.236 3.764 10 H 0.016 0.984 11 O -0.570 6.570 12 C 0.050 3.950 13 N -0.657 5.657 14 C 0.157 3.843 15 C 0.054 3.946 16 O -0.570 6.570 17 C -0.099 4.099 18 C -0.113 4.113 19 C -0.075 4.075 20 C -0.079 4.079 21 C -0.132 4.132 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.126 4.126 25 C -0.059 4.059 26 H 0.261 0.739 27 H 0.353 0.647 28 H 0.030 0.970 29 H 0.069 0.931 30 H 0.333 0.667 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.391 0.609 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 -18.486 0.584 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.175 4.175 3 Si 0.783 3.217 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.625 4.625 8 H 0.078 0.922 9 C 0.178 3.822 10 H 0.033 0.967 11 O -0.373 6.373 12 C -0.078 4.078 13 N -0.288 5.288 14 C 0.066 3.934 15 C -0.026 4.026 16 O -0.376 6.376 17 C -0.136 4.136 18 C -0.150 4.150 19 C -0.112 4.112 20 C -0.080 4.080 21 C -0.150 4.150 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.144 4.144 25 C -0.059 4.059 26 H 0.069 0.931 27 H 0.197 0.803 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.151 0.849 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.240 0.760 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.141 -18.636 -0.164 19.333 hybrid contribution 1.221 1.598 1.435 2.470 sum 6.362 -17.038 1.271 18.231 Atomic orbital electron populations 1.70218 1.07681 1.27358 1.48376 1.25875 0.95418 1.02832 0.93408 0.85639 0.78364 0.78617 0.79101 1.19189 1.21172 1.19341 1.21996 0.93513 0.92690 1.54312 0.92199 1.19165 0.87734 0.90368 0.84959 0.96652 1.86505 1.38651 1.96443 1.15716 1.22616 0.96420 0.89035 0.99775 1.60770 1.15921 1.00655 1.51436 1.19740 0.90442 0.88750 0.94435 1.22954 0.93740 0.87945 0.97931 1.86480 1.56017 1.39984 1.55152 1.21529 0.97216 1.01264 0.93638 1.21444 0.99867 0.96035 0.97667 1.20484 1.01112 0.97004 0.92602 1.19884 0.97857 0.94576 0.95680 1.21412 0.98352 0.96966 0.98299 1.21355 1.00000 1.00147 0.92826 1.21270 0.99176 0.94620 1.00155 1.21244 0.98536 0.98159 0.96490 1.19282 0.98126 0.95017 0.93488 0.93053 0.80322 0.95238 0.91250 0.84912 0.93437 0.93866 0.76039 0.92313 0.91081 0.92102 0.90632 0.89851 0.89900 0.84244 0.83782 0.84536 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.83 12.84 21.45 0.28 -53.55 16 2 C 0.03 1.51 5.40 84.66 0.46 1.97 16 3 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.59 -31.75 8.76 25.60 0.22 -31.52 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.24 11.90 3.00 29.85 0.09 11.99 16 10 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 11 O -0.57 -29.97 12.59 -148.98 -1.88 -31.84 16 12 C 0.05 1.99 4.50 86.30 0.39 2.38 16 13 N -0.66 -23.28 5.40 -474.46 -2.56 -25.84 16 14 C 0.16 4.71 0.35 2.67 0.00 4.71 16 15 C 0.05 1.49 4.68 71.98 0.34 1.82 16 16 O -0.57 -13.92 12.46 -148.98 -1.86 -15.77 16 17 C -0.10 -2.82 4.65 30.62 0.14 -2.67 16 18 C -0.11 -3.00 5.96 30.62 0.18 -2.82 16 19 C -0.08 -1.76 5.67 29.74 0.17 -1.59 16 20 C -0.08 -2.13 5.74 -19.86 -0.11 -2.25 16 21 C -0.13 -3.04 9.61 22.36 0.21 -2.83 16 22 C -0.13 -2.70 10.05 22.21 0.22 -2.48 16 23 C -0.13 -3.16 10.05 22.20 0.22 -2.94 16 24 C -0.13 -3.45 8.67 22.36 0.19 -3.26 16 25 C -0.06 -1.71 4.45 -19.86 -0.09 -1.80 16 26 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 27 H 0.35 16.71 9.04 -74.06 -0.67 16.04 16 28 H 0.03 1.13 6.14 -2.39 -0.01 1.12 16 29 H 0.07 2.71 6.39 -2.39 -0.02 2.70 16 30 H 0.33 12.35 8.36 -89.69 -0.75 11.60 16 31 H 0.05 1.34 6.58 -2.39 -0.02 1.33 16 32 H 0.04 1.16 6.65 -2.38 -0.02 1.15 16 33 H 0.39 5.99 9.12 -74.05 -0.68 5.32 16 34 H 0.06 1.76 6.19 -2.38 -0.01 1.75 16 35 H 0.07 1.97 7.60 -2.39 -0.02 1.95 16 36 H 0.06 1.95 7.59 -2.39 -0.02 1.93 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.71 8.13 -2.39 -0.02 1.69 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.14 2.46 8.05 -2.91 -0.02 2.43 16 41 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 43 H 0.11 2.97 6.45 -2.91 -0.02 2.95 16 Total: -1.00 -66.55 338.59 -2.40 -68.95 By element: Atomic # 1 Polarization: 45.43 SS G_CDS: -1.05 Total: 44.39 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: 2.64 Total: -31.29 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -2.29 Total: -79.40 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -3.73 Total: -47.62 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -66.55 -2.40 -68.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930325604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.372 kcal (2) G-P(sol) polarization free energy of solvation -66.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds