Wall clock time and date at job start Tue Mar 31 2020 07:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99839 * 2 1 4 4 H 1.48500 * 109.47258 * 270.00227 * 3 2 1 5 5 H 1.48498 * 109.47209 * 30.00137 * 3 2 1 6 6 H 1.48503 * 109.46921 * 149.99876 * 3 2 1 7 7 C 1.37872 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00316 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00082 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.47165 * 300.00103 * 9 7 2 11 11 O 1.42900 * 109.47164 * 59.99687 * 9 7 2 12 12 C 1.53004 * 109.47521 * 179.97438 * 9 7 2 13 13 N 1.46896 * 109.47254 * 174.56876 * 12 9 7 14 14 C 1.48558 * 110.99696 * 185.56760 * 13 12 9 15 15 C 1.54384 * 104.59381 * 159.04419 * 14 13 12 16 16 C 1.54255 * 105.14718 * 336.09344 * 15 14 13 17 17 C 1.52997 * 110.32682 * 118.95145 * 16 15 14 18 18 O 1.42901 * 109.47257 * 61.44936 * 17 16 15 19 19 C 1.50707 * 110.32613 * 241.15784 * 16 15 14 20 20 C 1.38234 * 119.99538 * 52.91355 * 19 16 15 21 21 C 1.38240 * 119.99424 * 179.76639 * 20 19 16 22 22 C 1.38235 * 119.99917 * 0.51361 * 21 20 19 23 23 C 1.38228 * 120.00226 * 359.73908 * 22 21 20 24 24 C 1.38232 * 119.99756 * 233.18956 * 19 16 15 25 25 C 1.48557 * 111.00244 * 300.98434 * 13 12 9 26 26 H 0.96998 * 120.00404 * 359.97438 * 1 2 3 27 27 H 0.96706 * 113.99739 * 59.99913 * 11 9 7 28 28 H 1.09002 * 109.46784 * 54.56801 * 12 9 7 29 29 H 1.09000 * 109.47017 * 294.57312 * 12 9 7 30 30 H 1.09004 * 110.41750 * 40.26261 * 14 13 12 31 31 H 1.09003 * 110.41324 * 277.82074 * 14 13 12 32 32 H 1.08999 * 110.32492 * 95.03980 * 15 14 13 33 33 H 1.09001 * 110.31825 * 217.15074 * 15 14 13 34 34 H 1.08997 * 109.47918 * 181.45450 * 17 16 15 35 35 H 1.09003 * 109.46474 * 301.45570 * 17 16 15 36 36 H 0.96695 * 114.00357 * 180.02562 * 18 17 16 37 37 H 1.07998 * 120.00518 * 0.02562 * 20 19 16 38 38 H 1.07998 * 119.99669 * 180.22930 * 21 20 19 39 39 H 1.08002 * 119.99888 * 179.72147 * 22 21 20 40 40 H 1.07998 * 120.00464 * 179.97438 * 23 22 21 41 41 H 1.07991 * 120.00552 * 0.02562 * 24 19 16 42 42 H 1.09003 * 110.40890 * 319.74204 * 25 13 12 43 43 H 1.09000 * 110.40883 * 82.06059 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8894 11 8 3.9874 -0.5211 1.1674 12 6 4.0216 -2.6365 -0.0001 13 7 5.4848 -2.6385 -0.1306 14 6 6.0050 -4.0231 -0.2686 15 6 7.3949 -3.8535 -0.9189 16 6 7.3332 -2.4990 -1.6544 17 6 8.3800 -1.5380 -1.0874 18 8 9.6853 -2.0850 -1.2849 19 6 7.5484 -2.6959 -3.1330 20 6 6.7752 -3.6066 -3.8286 21 6 6.9694 -3.7837 -5.1858 22 6 7.9437 -3.0580 -5.8451 23 6 8.7203 -2.1512 -5.1485 24 6 8.5227 -1.9701 -3.7923 25 6 5.9085 -1.9628 -1.3840 26 1 -0.4850 0.8400 0.0004 27 1 3.7017 -0.9252 1.9983 28 1 3.5814 -3.1774 -0.8377 29 1 3.7395 -3.1217 0.9343 30 1 5.3528 -4.6119 -0.9137 31 1 6.0982 -4.4936 0.7102 32 1 8.1710 -3.8337 -0.1537 33 1 7.5826 -4.6606 -1.6270 34 1 8.3071 -0.5782 -1.5987 35 1 8.2031 -1.3961 -0.0212 36 1 10.4004 -1.5277 -0.9486 37 1 6.0167 -4.1766 -3.3127 38 1 6.3628 -4.4925 -5.7300 39 1 8.0984 -3.1996 -6.9046 40 1 9.4819 -1.5845 -5.6635 41 1 9.1300 -1.2623 -3.2479 42 1 5.2410 -2.2291 -2.2036 43 1 5.9268 -0.8818 -1.2455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930530601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:18 Heat of formation + Delta-G solvation = -62.464977 kcal Electronic energy + Delta-G solvation = -24075.888846 eV Core-core repulsion = 20700.024201 eV Total energy + Delta-G solvation = -3375.864645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.38672 -38.18507 -36.81217 -35.71787 -32.97939 -32.23426 -30.93578 -30.29265 -28.79628 -27.92609 -25.64456 -24.26931 -22.62743 -22.15453 -21.25378 -20.17753 -19.08246 -17.60117 -17.26119 -16.94304 -15.67800 -15.31141 -14.95068 -14.82431 -14.62708 -14.51283 -14.32933 -13.86748 -13.58375 -13.15127 -13.01203 -12.85019 -12.55959 -12.34914 -12.25003 -11.96662 -11.47041 -11.39970 -11.28427 -11.04596 -10.92206 -10.83973 -10.65312 -10.37679 -10.33267 -9.95813 -9.88423 -9.02512 -8.85825 -8.62896 -8.61588 -8.23117 -7.99399 -6.13616 -4.24933 1.39139 1.46075 3.38214 3.47885 3.74818 3.79930 4.10360 4.34020 4.53264 4.63346 4.77287 4.96126 5.00601 5.03469 5.15450 5.21574 5.24116 5.40668 5.43127 5.51510 5.53351 5.69310 5.78785 5.85557 5.86514 5.93927 6.00985 6.02188 6.08128 6.10206 6.18541 6.27615 6.33662 6.53234 6.54544 6.59941 6.70678 7.03431 7.14602 7.33833 7.39329 7.56012 7.67343 8.28776 8.82950 9.09200 9.51406 10.97105 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017759 B = 0.004597 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.245584 B = 6089.962024 C = 6395.079458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.084 3.916 3 Si 0.869 3.131 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.215 1.215 7 C -0.567 4.567 8 H 0.071 0.929 9 C 0.200 3.800 10 H 0.052 0.948 11 O -0.573 6.573 12 C 0.029 3.971 13 N -0.500 5.500 14 C 0.026 3.974 15 C -0.102 4.102 16 C -0.022 4.022 17 C 0.090 3.910 18 O -0.569 6.569 19 C -0.058 4.058 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.102 4.102 25 C 0.049 3.951 26 H 0.265 0.735 27 H 0.355 0.645 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.374 0.626 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.052 0.948 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.034 -5.974 -6.185 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.120 4.120 3 Si 0.695 3.305 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.138 1.138 7 C -0.604 4.604 8 H 0.089 0.911 9 C 0.142 3.858 10 H 0.070 0.930 11 O -0.378 6.378 12 C -0.099 4.099 13 N -0.224 5.224 14 C -0.102 4.102 15 C -0.140 4.140 16 C -0.023 4.023 17 C 0.013 3.987 18 O -0.374 6.374 19 C -0.059 4.059 20 C -0.133 4.133 21 C -0.140 4.140 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.120 4.120 25 C -0.079 4.079 26 H 0.074 0.926 27 H 0.201 0.799 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.221 0.779 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.145 0.855 42 H 0.070 0.930 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 18.995 -5.711 -6.410 20.845 hybrid contribution -0.321 0.453 -0.268 0.616 sum 18.674 -5.258 -6.678 20.518 Atomic orbital electron populations 1.69957 1.06786 1.27466 1.48838 1.24974 0.94590 0.99942 0.92482 0.87051 0.83210 0.81845 0.78353 1.21487 1.22211 1.13758 1.21522 0.89918 0.94810 1.54178 0.91094 1.19736 0.93214 0.86864 0.85962 0.92997 1.86652 1.77926 1.57091 1.16131 1.23015 0.84952 1.01156 1.00746 1.65478 1.12911 1.10817 1.33174 1.23199 0.95063 0.91759 1.00195 1.22358 0.97291 0.95208 0.99139 1.20337 0.94829 0.96260 0.90839 1.22159 0.81987 0.94764 0.99805 1.86529 1.15755 1.50653 1.84420 1.19704 0.95726 0.96107 0.94342 1.21000 0.99440 0.98514 0.94347 1.21079 0.98414 0.99977 0.94502 1.21089 0.96660 0.97287 0.99619 1.21121 0.99797 0.98853 0.94545 1.21179 0.97308 0.99508 0.94029 1.23187 0.92156 1.00502 0.92092 0.92584 0.79897 0.94653 0.90971 0.94280 0.90376 0.90508 0.91402 0.93548 0.92052 0.77935 0.86381 0.86326 0.86531 0.86475 0.85535 0.92999 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.96 55.43 0.77 -26.51 16 2 C 0.08 2.43 5.47 -17.82 -0.10 2.34 16 3 Si 0.87 21.84 26.99 -169.99 -4.59 17.25 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.22 -5.28 5.31 56.52 0.30 -4.98 16 7 C -0.57 -15.66 9.34 -34.44 -0.32 -15.98 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C 0.20 4.62 2.19 -27.88 -0.06 4.56 16 10 H 0.05 1.25 6.06 -51.93 -0.31 0.94 16 11 O -0.57 -12.98 10.10 -35.23 -0.36 -13.34 16 12 C 0.03 0.57 4.51 -3.82 -0.02 0.55 16 13 N -0.50 -8.43 5.41 -229.82 -1.24 -9.67 16 14 C 0.03 0.37 6.49 -2.18 -0.01 0.35 16 15 C -0.10 -1.32 5.71 -25.35 -0.14 -1.47 16 16 C -0.02 -0.30 0.68 -154.16 -0.11 -0.40 16 17 C 0.09 1.08 4.87 37.16 0.18 1.26 16 18 O -0.57 -6.00 11.29 -35.23 -0.40 -6.40 16 19 C -0.06 -0.78 4.64 -104.62 -0.49 -1.27 16 20 C -0.11 -1.51 8.03 -39.58 -0.32 -1.83 16 21 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 22 C -0.13 -1.43 10.05 -39.59 -0.40 -1.83 16 23 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 24 C -0.10 -1.28 8.54 -39.58 -0.34 -1.61 16 25 C 0.05 0.79 4.33 -2.06 -0.01 0.78 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.36 7.23 9.04 45.56 0.41 7.64 16 28 H 0.04 0.70 7.97 -51.93 -0.41 0.29 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.04 0.55 7.89 -51.93 -0.41 0.14 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.99 7.52 -51.93 -0.39 0.60 16 33 H 0.07 0.85 7.12 -51.93 -0.37 0.48 16 34 H 0.05 0.53 7.31 -51.93 -0.38 0.15 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.37 2.30 9.12 45.56 0.42 2.71 16 37 H 0.12 1.52 7.86 -52.49 -0.41 1.10 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.13 1.44 5.41 -52.49 -0.28 1.16 16 42 H 0.05 0.88 7.12 -51.93 -0.37 0.51 16 43 H 0.09 1.49 7.26 -51.93 -0.38 1.11 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -32.23 336.79 -8.75 -40.97 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -5.09 Total: 10.81 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -2.92 Total: -18.19 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.47 Total: -36.18 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.75 Total: -19.74 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.59 Total: 17.25 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.23 -8.75 -40.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930530601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.493 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds