Wall clock time and date at job start Tue Mar 31 2020 07:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99839 * 2 1 4 4 H 1.48500 * 109.47258 * 270.00227 * 3 2 1 5 5 H 1.48498 * 109.47209 * 30.00137 * 3 2 1 6 6 H 1.48503 * 109.46921 * 149.99876 * 3 2 1 7 7 C 1.37872 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00316 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00082 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.47165 * 300.00103 * 9 7 2 11 11 O 1.42900 * 109.47164 * 59.99687 * 9 7 2 12 12 C 1.53004 * 109.47521 * 179.97438 * 9 7 2 13 13 N 1.46896 * 109.47254 * 174.56876 * 12 9 7 14 14 C 1.48558 * 110.99696 * 185.56760 * 13 12 9 15 15 C 1.54384 * 104.59381 * 159.04419 * 14 13 12 16 16 C 1.54255 * 105.14718 * 336.09344 * 15 14 13 17 17 C 1.52997 * 110.32682 * 118.95145 * 16 15 14 18 18 O 1.42901 * 109.47257 * 61.44936 * 17 16 15 19 19 C 1.50707 * 110.32613 * 241.15784 * 16 15 14 20 20 C 1.38234 * 119.99538 * 52.91355 * 19 16 15 21 21 C 1.38240 * 119.99424 * 179.76639 * 20 19 16 22 22 C 1.38235 * 119.99917 * 0.51361 * 21 20 19 23 23 C 1.38228 * 120.00226 * 359.73908 * 22 21 20 24 24 C 1.38232 * 119.99756 * 233.18956 * 19 16 15 25 25 C 1.48557 * 111.00244 * 300.98434 * 13 12 9 26 26 H 0.96998 * 120.00404 * 359.97438 * 1 2 3 27 27 H 0.96706 * 113.99739 * 59.99913 * 11 9 7 28 28 H 1.09002 * 109.46784 * 54.56801 * 12 9 7 29 29 H 1.09000 * 109.47017 * 294.57312 * 12 9 7 30 30 H 1.09004 * 110.41750 * 40.26261 * 14 13 12 31 31 H 1.09003 * 110.41324 * 277.82074 * 14 13 12 32 32 H 1.08999 * 110.32492 * 95.03980 * 15 14 13 33 33 H 1.09001 * 110.31825 * 217.15074 * 15 14 13 34 34 H 1.08997 * 109.47918 * 181.45450 * 17 16 15 35 35 H 1.09003 * 109.46474 * 301.45570 * 17 16 15 36 36 H 0.96695 * 114.00357 * 180.02562 * 18 17 16 37 37 H 1.07998 * 120.00518 * 0.02562 * 20 19 16 38 38 H 1.07998 * 119.99669 * 180.22930 * 21 20 19 39 39 H 1.08002 * 119.99888 * 179.72147 * 22 21 20 40 40 H 1.07998 * 120.00464 * 179.97438 * 23 22 21 41 41 H 1.07991 * 120.00552 * 0.02562 * 24 19 16 42 42 H 1.09003 * 110.40890 * 319.74204 * 25 13 12 43 43 H 1.09000 * 110.40883 * 82.06059 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8894 11 8 3.9874 -0.5211 1.1674 12 6 4.0216 -2.6365 -0.0001 13 7 5.4848 -2.6385 -0.1306 14 6 6.0050 -4.0231 -0.2686 15 6 7.3949 -3.8535 -0.9189 16 6 7.3332 -2.4990 -1.6544 17 6 8.3800 -1.5380 -1.0874 18 8 9.6853 -2.0850 -1.2849 19 6 7.5484 -2.6959 -3.1330 20 6 6.7752 -3.6066 -3.8286 21 6 6.9694 -3.7837 -5.1858 22 6 7.9437 -3.0580 -5.8451 23 6 8.7203 -2.1512 -5.1485 24 6 8.5227 -1.9701 -3.7923 25 6 5.9085 -1.9628 -1.3840 26 1 -0.4850 0.8400 0.0004 27 1 3.7017 -0.9252 1.9983 28 1 3.5814 -3.1774 -0.8377 29 1 3.7395 -3.1217 0.9343 30 1 5.3528 -4.6119 -0.9137 31 1 6.0982 -4.4936 0.7102 32 1 8.1710 -3.8337 -0.1537 33 1 7.5826 -4.6606 -1.6270 34 1 8.3071 -0.5782 -1.5987 35 1 8.2031 -1.3961 -0.0212 36 1 10.4004 -1.5277 -0.9486 37 1 6.0167 -4.1766 -3.3127 38 1 6.3628 -4.4925 -5.7300 39 1 8.0984 -3.1996 -6.9046 40 1 9.4819 -1.5845 -5.6635 41 1 9.1300 -1.2623 -3.2479 42 1 5.2410 -2.2291 -2.2036 43 1 5.9268 -0.8818 -1.2455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930530601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:17 Heat of formation + Delta-G solvation = -87.593206 kcal Electronic energy + Delta-G solvation = -24076.978488 eV Core-core repulsion = 20700.024201 eV Total energy + Delta-G solvation = -3376.954287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.43594 -39.33304 -38.01910 -37.12218 -34.43301 -34.15000 -31.88514 -31.50542 -29.83036 -29.63569 -27.00422 -25.71718 -23.72231 -23.13880 -22.55788 -21.72859 -20.19150 -19.39724 -18.35718 -17.88819 -16.97232 -16.72847 -16.51266 -16.22813 -16.01307 -15.71955 -15.43343 -15.18690 -15.00253 -14.63599 -14.13629 -14.01694 -13.91738 -13.67249 -13.49873 -13.24142 -12.98789 -12.91413 -12.54500 -12.42773 -12.23370 -12.22903 -12.04916 -11.74733 -11.63626 -11.32436 -11.06170 -10.82760 -10.81767 -10.11826 -9.76496 -9.57607 -9.35312 -8.37173 -6.51959 0.47901 0.55847 1.37697 1.43376 1.73688 2.42378 2.87408 3.00392 3.03124 3.26061 3.56208 3.71274 3.96420 4.05110 4.08638 4.18366 4.24668 4.26973 4.30266 4.34589 4.40778 4.54251 4.58711 4.62830 4.69596 4.75770 4.79935 4.87237 4.94915 5.01065 5.09308 5.15969 5.20430 5.24769 5.41312 5.46285 5.62898 5.66297 5.77270 5.90908 6.05255 6.08461 6.16928 6.60622 6.95912 7.20834 7.35883 8.77118 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017759 B = 0.004597 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.245584 B = 6089.962024 C = 6395.079458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.031 3.969 3 Si 0.935 3.065 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.036 0.964 9 C 0.210 3.790 10 H 0.046 0.954 11 O -0.574 6.574 12 C 0.042 3.958 13 N -0.503 5.503 14 C 0.027 3.973 15 C -0.093 4.093 16 C -0.018 4.018 17 C 0.098 3.902 18 O -0.575 6.575 19 C -0.074 4.074 20 C -0.133 4.133 21 C -0.131 4.131 22 C -0.131 4.131 23 C -0.129 4.129 24 C -0.112 4.112 25 C 0.049 3.951 26 H 0.267 0.733 27 H 0.367 0.633 28 H 0.025 0.975 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.395 0.605 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.037 0.963 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.759 -5.655 -6.750 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.169 4.169 3 Si 0.759 3.241 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.125 1.125 7 C -0.606 4.606 8 H 0.054 0.946 9 C 0.152 3.848 10 H 0.064 0.936 11 O -0.380 6.380 12 C -0.086 4.086 13 N -0.226 5.226 14 C -0.101 4.101 15 C -0.131 4.131 16 C -0.018 4.018 17 C 0.020 3.980 18 O -0.382 6.382 19 C -0.075 4.075 20 C -0.151 4.151 21 C -0.149 4.149 22 C -0.149 4.149 23 C -0.147 4.147 24 C -0.130 4.130 25 C -0.079 4.079 26 H 0.076 0.924 27 H 0.215 0.785 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.244 0.756 37 H 0.130 0.870 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.154 0.846 42 H 0.055 0.945 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 21.751 -5.404 -6.962 23.468 hybrid contribution -1.164 0.268 -0.127 1.201 sum 20.587 -5.136 -7.089 22.371 Atomic orbital electron populations 1.70078 1.08479 1.28423 1.50853 1.25822 0.95228 1.03525 0.92324 0.86043 0.82193 0.77535 0.78343 1.21326 1.22226 1.12458 1.21856 0.92436 0.93342 1.53012 0.94567 1.19481 0.90260 0.89071 0.85976 0.93597 1.86581 1.77579 1.57353 1.16499 1.22696 0.86907 0.98492 1.00519 1.65432 1.10636 1.12764 1.33792 1.23264 0.95611 0.90141 1.01075 1.22288 0.96418 0.95224 0.99138 1.20252 0.93537 0.96577 0.91472 1.21959 0.82385 0.94445 0.99175 1.86480 1.15726 1.51400 1.84643 1.19764 0.96585 0.96895 0.94232 1.21097 0.99744 0.99049 0.95192 1.21353 0.98906 1.00444 0.94182 1.21442 0.95921 0.96581 1.00926 1.21467 1.00145 0.98805 0.94268 1.21376 0.97271 0.99604 0.94769 1.23136 0.93907 0.99699 0.91176 0.92415 0.78546 0.95702 0.90710 0.94280 0.89188 0.90012 0.90949 0.93024 0.92744 0.75570 0.87043 0.84797 0.84037 0.84057 0.84645 0.94457 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.56 13.96 21.45 0.30 -58.26 16 2 C 0.03 1.79 5.47 84.65 0.46 2.25 16 3 Si 0.93 45.29 26.99 68.60 1.85 47.14 16 4 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.20 -9.35 5.31 99.48 0.53 -8.82 16 7 C -0.57 -32.00 9.34 25.60 0.24 -31.76 16 8 H 0.04 2.24 7.99 -2.91 -0.02 2.21 16 9 C 0.21 9.68 2.19 29.85 0.07 9.74 16 10 H 0.05 2.20 6.06 -2.39 -0.01 2.18 16 11 O -0.57 -25.16 10.10 -148.98 -1.50 -26.66 16 12 C 0.04 1.65 4.51 86.31 0.39 2.04 16 13 N -0.50 -16.55 5.41 -881.01 -4.77 -21.31 16 14 C 0.03 0.73 6.49 86.45 0.56 1.29 16 15 C -0.09 -2.27 5.71 31.49 0.18 -2.09 16 16 C -0.02 -0.45 0.68 -51.95 -0.04 -0.49 16 17 C 0.10 2.16 4.87 71.98 0.35 2.51 16 18 O -0.57 -10.68 11.29 -148.98 -1.68 -12.36 16 19 C -0.07 -1.91 4.64 -19.86 -0.09 -2.00 16 20 C -0.13 -3.39 8.03 22.27 0.18 -3.21 16 21 C -0.13 -2.90 10.05 22.27 0.22 -2.68 16 22 C -0.13 -2.59 10.05 22.27 0.22 -2.36 16 23 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 24 C -0.11 -2.58 8.54 22.27 0.19 -2.39 16 25 C 0.05 1.56 4.33 86.53 0.37 1.94 16 26 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 27 H 0.37 14.38 9.04 -74.05 -0.67 13.71 16 28 H 0.02 1.01 7.97 -2.39 -0.02 0.99 16 29 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.04 1.07 7.89 -2.39 -0.02 1.05 16 31 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.08 1.93 7.52 -2.39 -0.02 1.91 16 33 H 0.07 1.72 7.12 -2.39 -0.02 1.70 16 34 H 0.05 1.08 7.31 -2.39 -0.02 1.06 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.39 3.72 9.12 -74.06 -0.68 3.04 16 37 H 0.11 2.88 7.86 -2.91 -0.02 2.86 16 38 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 41 H 0.14 2.77 5.41 -2.92 -0.02 2.75 16 42 H 0.04 1.29 7.12 -2.39 -0.02 1.27 16 43 H 0.07 2.47 7.26 -2.39 -0.02 2.46 16 Total: -1.00 -68.83 336.79 -2.77 -71.60 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -0.50 Total: 29.42 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 3.54 Total: -29.57 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -4.47 Total: -79.57 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -3.19 Total: -39.03 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.85 Total: 47.14 kcal Total: -68.83 -2.77 -71.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930530601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.989 kcal (2) G-P(sol) polarization free energy of solvation -68.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds