Wall clock time and date at job start Tue Mar 31 2020 07:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00123 * 2 1 4 4 H 1.48498 * 109.47360 * 270.00295 * 3 2 1 5 5 H 1.48501 * 109.47151 * 29.99977 * 3 2 1 6 6 H 1.48502 * 109.46978 * 150.00383 * 3 2 1 7 7 C 1.37881 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00163 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99805 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47349 * 300.00428 * 9 7 2 11 11 O 1.42903 * 109.46786 * 60.00199 * 9 7 2 12 12 C 1.52997 * 109.47026 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.47088 * 178.37547 * 12 9 7 14 14 C 1.46850 * 110.99904 * 164.06367 * 13 12 9 15 15 C 1.53038 * 109.52163 * 185.83711 * 14 13 12 16 16 C 1.53118 * 109.27835 * 300.81891 * 15 14 13 17 17 C 1.53117 * 109.16383 * 57.65555 * 16 15 14 18 18 O 1.42902 * 109.50246 * 62.32126 * 17 16 15 19 19 C 1.50691 * 109.50727 * 182.40410 * 17 16 15 20 20 C 1.38236 * 119.99951 * 90.20940 * 19 17 16 21 21 C 1.38241 * 120.00233 * 180.21290 * 20 19 17 22 22 C 1.38235 * 119.99574 * 359.53555 * 21 20 19 23 23 C 1.38238 * 120.00215 * 0.27295 * 22 21 20 24 24 C 1.38231 * 120.00268 * 270.00099 * 19 17 16 25 25 C 1.46850 * 110.99872 * 288.26802 * 13 12 9 26 26 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 27 27 H 0.96701 * 113.99832 * 60.00469 * 11 9 7 28 28 H 1.08996 * 109.47286 * 58.37164 * 12 9 7 29 29 H 1.09003 * 109.46903 * 298.37027 * 12 9 7 30 30 H 1.09001 * 109.46584 * 65.82061 * 14 13 12 31 31 H 1.08999 * 109.46171 * 305.85182 * 14 13 12 32 32 H 1.08996 * 109.50266 * 180.87752 * 15 14 13 33 33 H 1.09003 * 109.50629 * 60.76121 * 15 14 13 34 34 H 1.08997 * 109.52357 * 297.75109 * 16 15 14 35 35 H 1.09007 * 109.57591 * 177.59187 * 16 15 14 36 36 H 0.96705 * 113.99265 * 60.08635 * 18 17 16 37 37 H 1.07996 * 120.00458 * 0.02562 * 20 19 17 38 38 H 1.07996 * 120.00408 * 179.80640 * 21 20 19 39 39 H 1.07999 * 119.99943 * 180.25663 * 22 21 20 40 40 H 1.07996 * 120.00098 * 179.97438 * 23 22 21 41 41 H 1.08006 * 120.00157 * 359.97438 * 24 19 17 42 42 H 1.09005 * 109.45681 * 54.14815 * 25 13 12 43 43 H 1.08999 * 109.46488 * 294.18379 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4290 -2.5745 -1.1671 12 6 2.2451 -3.6621 -0.0005 13 7 1.5110 -4.9339 0.0387 14 6 2.3814 -6.0557 -0.3359 15 6 1.5521 -7.3388 -0.4254 16 6 0.8930 -7.6102 0.9297 17 6 0.0305 -6.4066 1.3193 18 8 -1.0112 -6.2345 0.3564 19 6 -0.5751 -6.6406 2.6792 20 6 0.0963 -6.2283 3.8150 21 6 -0.4571 -6.4468 5.0628 22 6 -1.6864 -7.0691 5.1742 23 6 -2.3597 -7.4779 4.0382 24 6 -1.8039 -7.2637 2.7907 25 6 0.9040 -5.1506 1.3582 26 1 -0.4850 0.8401 0.0004 27 1 0.9209 -2.5291 -1.9984 28 1 2.8909 -3.5881 0.8744 29 1 2.8524 -3.6209 -0.9048 30 1 3.1602 -6.1784 0.4168 31 1 2.8405 -5.8518 -1.3033 32 1 2.2011 -8.1740 -0.6883 33 1 0.7818 -7.2218 -1.1878 34 1 1.6635 -7.7658 1.6848 35 1 0.2667 -8.4997 0.8597 36 1 -1.6036 -6.9948 0.2777 37 1 1.0547 -5.7380 3.7279 38 1 0.0689 -6.1275 5.9504 39 1 -2.1207 -7.2362 6.1488 40 1 -3.3199 -7.9645 4.1253 41 1 -2.3303 -7.5825 1.9031 42 1 0.2900 -4.2892 1.6213 43 1 1.6896 -5.2774 2.1031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931177296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:07 Heat of formation + Delta-G solvation = -67.544699 kcal Electronic energy + Delta-G solvation = -24103.859324 eV Core-core repulsion = 20727.774405 eV Total energy + Delta-G solvation = -3376.084919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.26650 -38.24946 -36.28639 -34.87553 -32.39067 -31.96836 -31.84325 -30.84603 -28.58286 -28.10016 -25.20336 -23.63310 -23.12672 -22.32727 -21.01455 -20.13026 -19.48624 -17.57042 -16.90783 -15.96183 -15.59413 -15.29952 -14.96291 -14.59903 -14.34802 -14.29213 -14.15789 -13.67548 -13.56200 -13.19024 -13.01897 -12.71701 -12.50773 -12.27608 -12.16784 -11.85047 -11.45625 -11.12133 -10.99513 -10.92253 -10.87928 -10.76069 -10.69137 -10.44711 -10.19468 -9.89771 -9.66990 -8.94353 -8.89829 -8.70384 -8.49997 -7.99567 -7.47348 -5.92584 -4.11489 1.31387 1.37664 3.31360 3.38186 3.40410 3.73317 4.24389 4.44635 4.53956 4.68784 4.83429 4.90180 4.98997 5.02737 5.08871 5.29572 5.34265 5.35298 5.48591 5.56801 5.71848 5.77946 5.80952 5.91165 5.94744 5.95072 6.01117 6.11583 6.19133 6.30930 6.42381 6.46305 6.47366 6.49236 6.60492 6.69554 6.89321 6.95980 7.60924 7.71439 7.84700 7.94044 8.00486 8.28886 8.92944 9.55731 9.74288 11.11222 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.004549 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.038750 B = 6153.704064 C = 7024.129887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.080 3.920 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.576 4.576 8 H 0.053 0.947 9 C 0.241 3.759 10 H 0.052 0.948 11 O -0.549 6.549 12 C 0.031 3.969 13 N -0.514 5.514 14 C 0.053 3.947 15 C -0.111 4.111 16 C -0.138 4.138 17 C 0.180 3.820 18 O -0.520 6.520 19 C -0.101 4.101 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.119 4.119 24 C -0.112 4.112 25 C 0.076 3.924 26 H 0.260 0.740 27 H 0.339 0.661 28 H 0.025 0.975 29 H 0.063 0.937 30 H 0.020 0.980 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.359 0.641 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.091 0.909 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.191 -18.026 6.338 19.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.126 4.126 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.614 4.614 8 H 0.071 0.929 9 C 0.182 3.818 10 H 0.070 0.930 11 O -0.350 6.350 12 C -0.096 4.096 13 N -0.238 5.238 14 C -0.075 4.075 15 C -0.148 4.148 16 C -0.176 4.176 17 C 0.138 3.862 18 O -0.324 6.324 19 C -0.102 4.102 20 C -0.130 4.130 21 C -0.136 4.136 22 C -0.144 4.144 23 C -0.137 4.137 24 C -0.130 4.130 25 C -0.053 4.053 26 H 0.069 0.931 27 H 0.182 0.818 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.205 0.795 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.109 0.891 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.917 -17.344 6.378 18.502 hybrid contribution 1.393 0.438 0.484 1.538 sum 0.476 -16.906 6.862 18.252 Atomic orbital electron populations 1.70099 1.05876 1.26264 1.46972 1.25019 0.94641 0.98961 0.93953 0.86712 0.79929 0.83749 0.78182 1.20536 1.21157 1.19944 1.21684 0.93067 0.91765 1.54897 0.92852 1.19256 0.87685 0.88212 0.86608 0.93037 1.86607 1.37417 1.96272 1.14736 1.23113 0.97068 0.89996 0.99466 1.61810 1.33230 1.01703 1.27019 1.22113 0.93770 0.91579 1.00086 1.21501 0.99653 0.96490 0.97200 1.22242 0.99599 0.97340 0.98428 1.19993 0.87302 0.95148 0.83735 1.86919 1.42460 1.43059 1.59930 1.20601 0.95475 0.98054 0.96035 1.21154 1.00479 0.99322 0.92014 1.21157 0.95977 0.99039 0.97419 1.21133 0.95451 0.99366 0.98450 1.21082 0.99753 1.00364 0.92519 1.20869 0.95190 0.99301 0.97634 1.22064 0.96136 0.96840 0.90219 0.93054 0.81792 0.95711 0.91877 0.96138 0.91033 0.92124 0.90304 0.91594 0.91833 0.79478 0.85688 0.86060 0.86287 0.86154 0.86171 0.89121 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.05 12.84 55.43 0.71 -25.34 16 2 C 0.08 2.30 5.40 -17.82 -0.10 2.21 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.58 -16.14 8.76 -34.44 -0.30 -16.45 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.24 6.32 2.84 -27.88 -0.08 6.24 16 10 H 0.05 1.51 6.59 -51.93 -0.34 1.16 16 11 O -0.55 -15.06 12.63 -35.23 -0.44 -15.51 16 12 C 0.03 0.66 4.57 -3.83 -0.02 0.64 16 13 N -0.51 -9.71 4.39 -234.67 -1.03 -10.74 16 14 C 0.05 0.81 5.44 -3.83 -0.02 0.79 16 15 C -0.11 -1.42 5.94 -26.65 -0.16 -1.58 16 16 C -0.14 -1.70 4.97 -26.61 -0.13 -1.83 16 17 C 0.18 2.65 0.86 -91.70 -0.08 2.57 16 18 O -0.52 -8.41 12.05 -35.23 -0.42 -8.83 16 19 C -0.10 -1.37 4.85 -104.63 -0.51 -1.88 16 20 C -0.11 -1.48 9.14 -39.58 -0.36 -1.84 16 21 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 22 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 23 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 24 C -0.11 -1.34 9.32 -39.58 -0.37 -1.71 16 25 C 0.08 1.35 3.60 -3.83 -0.01 1.33 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.34 8.37 9.04 45.56 0.41 8.78 16 28 H 0.02 0.52 8.06 -51.93 -0.42 0.10 16 29 H 0.06 1.30 7.87 -51.93 -0.41 0.89 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 1.07 7.96 -51.93 -0.41 0.65 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.11 7.80 -51.93 -0.40 0.71 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.36 4.15 7.33 45.56 0.33 4.48 16 37 H 0.13 1.60 6.14 -52.49 -0.32 1.28 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.12 1.19 6.49 -52.48 -0.34 0.85 16 42 H 0.09 1.94 6.46 -51.93 -0.34 1.60 16 43 H 0.04 0.61 6.46 -51.93 -0.34 0.28 16 LS Contribution 341.58 15.07 5.15 5.15 Total: -1.00 -33.38 341.58 -9.47 -42.85 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -5.08 Total: 12.67 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -3.33 Total: -16.72 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.32 Total: -36.08 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.87 Total: -24.34 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.38 -9.47 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931177296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.697 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds