Wall clock time and date at job start Tue Mar 31 2020 07:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00123 * 2 1 4 4 H 1.48498 * 109.47360 * 270.00295 * 3 2 1 5 5 H 1.48501 * 109.47151 * 29.99977 * 3 2 1 6 6 H 1.48502 * 109.46978 * 150.00383 * 3 2 1 7 7 C 1.37881 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00163 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99805 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47349 * 300.00428 * 9 7 2 11 11 O 1.42903 * 109.46786 * 60.00199 * 9 7 2 12 12 C 1.52997 * 109.47026 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.47088 * 178.37547 * 12 9 7 14 14 C 1.46850 * 110.99904 * 164.06367 * 13 12 9 15 15 C 1.53038 * 109.52163 * 185.83711 * 14 13 12 16 16 C 1.53118 * 109.27835 * 300.81891 * 15 14 13 17 17 C 1.53117 * 109.16383 * 57.65555 * 16 15 14 18 18 O 1.42902 * 109.50246 * 62.32126 * 17 16 15 19 19 C 1.50691 * 109.50727 * 182.40410 * 17 16 15 20 20 C 1.38236 * 119.99951 * 90.20940 * 19 17 16 21 21 C 1.38241 * 120.00233 * 180.21290 * 20 19 17 22 22 C 1.38235 * 119.99574 * 359.53555 * 21 20 19 23 23 C 1.38238 * 120.00215 * 0.27295 * 22 21 20 24 24 C 1.38231 * 120.00268 * 270.00099 * 19 17 16 25 25 C 1.46850 * 110.99872 * 288.26802 * 13 12 9 26 26 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 27 27 H 0.96701 * 113.99832 * 60.00469 * 11 9 7 28 28 H 1.08996 * 109.47286 * 58.37164 * 12 9 7 29 29 H 1.09003 * 109.46903 * 298.37027 * 12 9 7 30 30 H 1.09001 * 109.46584 * 65.82061 * 14 13 12 31 31 H 1.08999 * 109.46171 * 305.85182 * 14 13 12 32 32 H 1.08996 * 109.50266 * 180.87752 * 15 14 13 33 33 H 1.09003 * 109.50629 * 60.76121 * 15 14 13 34 34 H 1.08997 * 109.52357 * 297.75109 * 16 15 14 35 35 H 1.09007 * 109.57591 * 177.59187 * 16 15 14 36 36 H 0.96705 * 113.99265 * 60.08635 * 18 17 16 37 37 H 1.07996 * 120.00458 * 0.02562 * 20 19 17 38 38 H 1.07996 * 120.00408 * 179.80640 * 21 20 19 39 39 H 1.07999 * 119.99943 * 180.25663 * 22 21 20 40 40 H 1.07996 * 120.00098 * 179.97438 * 23 22 21 41 41 H 1.08006 * 120.00157 * 359.97438 * 24 19 17 42 42 H 1.09005 * 109.45681 * 54.14815 * 25 13 12 43 43 H 1.08999 * 109.46488 * 294.18379 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4290 -2.5745 -1.1671 12 6 2.2451 -3.6621 -0.0005 13 7 1.5110 -4.9339 0.0387 14 6 2.3814 -6.0557 -0.3359 15 6 1.5521 -7.3388 -0.4254 16 6 0.8930 -7.6102 0.9297 17 6 0.0305 -6.4066 1.3193 18 8 -1.0112 -6.2345 0.3564 19 6 -0.5751 -6.6406 2.6792 20 6 0.0963 -6.2283 3.8150 21 6 -0.4571 -6.4468 5.0628 22 6 -1.6864 -7.0691 5.1742 23 6 -2.3597 -7.4779 4.0382 24 6 -1.8039 -7.2637 2.7907 25 6 0.9040 -5.1506 1.3582 26 1 -0.4850 0.8401 0.0004 27 1 0.9209 -2.5291 -1.9984 28 1 2.8909 -3.5881 0.8744 29 1 2.8524 -3.6209 -0.9048 30 1 3.1602 -6.1784 0.4168 31 1 2.8405 -5.8518 -1.3033 32 1 2.2011 -8.1740 -0.6883 33 1 0.7818 -7.2218 -1.1878 34 1 1.6635 -7.7658 1.6848 35 1 0.2667 -8.4997 0.8597 36 1 -1.6036 -6.9948 0.2777 37 1 1.0547 -5.7380 3.7279 38 1 0.0689 -6.1275 5.9504 39 1 -2.1207 -7.2362 6.1488 40 1 -3.3199 -7.9645 4.1253 41 1 -2.3303 -7.5825 1.9031 42 1 0.2900 -4.2892 1.6213 43 1 1.6896 -5.2774 2.1031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931177296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:06 Heat of formation + Delta-G solvation = -93.159267 kcal Electronic energy + Delta-G solvation = -24104.970055 eV Core-core repulsion = 20727.774405 eV Total energy + Delta-G solvation = -3377.195650 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.36366 -39.39378 -37.89831 -36.52100 -34.23012 -33.67706 -32.90359 -31.74499 -30.07606 -29.61770 -26.99431 -24.84845 -24.51378 -23.33572 -22.16665 -21.85411 -20.70121 -19.09190 -18.48781 -17.17232 -16.68511 -16.64239 -16.58817 -16.25646 -16.04464 -15.58797 -15.36059 -15.03637 -14.85886 -14.58177 -14.31529 -14.07802 -13.90282 -13.45786 -13.32240 -13.15457 -13.03287 -12.81655 -12.74399 -12.50456 -12.22242 -12.12645 -11.98125 -11.87246 -11.76798 -11.31029 -10.99537 -10.76500 -10.67267 -10.07514 -9.83794 -9.63908 -9.00038 -8.12102 -6.39654 0.40060 0.48033 1.39429 1.40581 1.51444 2.38123 2.81830 2.96493 3.13477 3.40770 3.59613 3.79444 3.84481 4.05536 4.12597 4.18101 4.21301 4.30764 4.32660 4.42761 4.47596 4.57592 4.59663 4.66812 4.76216 4.77004 4.88202 4.94901 5.00325 5.03757 5.04857 5.11691 5.19481 5.43007 5.54597 5.59828 5.60324 5.65136 5.75962 6.01813 6.09042 6.22553 6.37691 6.74947 6.96721 7.35185 7.65699 8.92472 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.004549 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.038750 B = 6153.704064 C = 7024.129887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.025 3.975 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.590 4.590 8 H 0.060 0.940 9 C 0.242 3.758 10 H 0.009 0.991 11 O -0.568 6.568 12 C 0.048 3.952 13 N -0.530 5.530 14 C 0.049 3.951 15 C -0.105 4.105 16 C -0.130 4.130 17 C 0.185 3.815 18 O -0.550 6.550 19 C -0.119 4.119 20 C -0.134 4.134 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.121 4.121 24 C -0.121 4.121 25 C 0.078 3.922 26 H 0.261 0.739 27 H 0.350 0.650 28 H 0.024 0.976 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.378 0.622 37 H 0.116 0.884 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.040 0.960 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.491 -19.632 6.760 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.628 4.628 8 H 0.079 0.921 9 C 0.184 3.816 10 H 0.027 0.973 11 O -0.371 6.371 12 C -0.080 4.080 13 N -0.254 5.254 14 C -0.079 4.079 15 C -0.142 4.142 16 C -0.168 4.168 17 C 0.144 3.856 18 O -0.356 6.356 19 C -0.120 4.120 20 C -0.152 4.152 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.139 4.139 24 C -0.139 4.139 25 C -0.050 4.050 26 H 0.070 0.930 27 H 0.194 0.806 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.227 0.773 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.059 0.941 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.221 -18.982 6.797 20.163 hybrid contribution 1.119 0.906 0.385 1.490 sum 0.898 -18.076 7.182 19.472 Atomic orbital electron populations 1.70262 1.07859 1.27306 1.48387 1.25949 0.95446 1.03062 0.93316 0.85521 0.78661 0.78587 0.78563 1.19595 1.20909 1.18762 1.22083 0.93539 0.92823 1.54387 0.92132 1.19085 0.87594 0.90136 0.84752 0.97309 1.86546 1.38523 1.96473 1.15564 1.22701 0.95609 0.89927 0.99781 1.61720 1.34000 1.01885 1.27797 1.22255 0.93956 0.91237 1.00407 1.21488 0.99482 0.96063 0.97181 1.22193 0.99618 0.96877 0.98119 1.19887 0.87032 0.94322 0.84408 1.86854 1.43405 1.44856 1.60519 1.20592 0.96579 0.99499 0.95349 1.21245 1.00715 1.00246 0.92982 1.21429 0.96667 0.99016 0.97346 1.21521 0.94908 0.98254 0.99854 1.21468 1.00689 0.99760 0.91996 1.21145 0.94606 0.99106 0.99068 1.21981 0.96273 0.96736 0.89989 0.93049 0.80647 0.95800 0.90968 0.95061 0.90632 0.88917 0.91595 0.90897 0.89378 0.77347 0.86560 0.84382 0.83567 0.83410 0.84437 0.94109 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.53 12.84 21.45 0.28 -56.25 16 2 C 0.02 1.42 5.40 84.66 0.46 1.88 16 3 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.59 -33.82 8.76 25.60 0.22 -33.60 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.24 13.31 2.84 29.85 0.08 13.39 16 10 H 0.01 0.57 6.59 -2.39 -0.02 0.56 16 11 O -0.57 -32.45 12.63 -148.98 -1.88 -34.33 16 12 C 0.05 2.09 4.57 86.30 0.39 2.48 16 13 N -0.53 -20.43 4.39 -896.35 -3.94 -24.37 16 14 C 0.05 1.44 5.44 86.33 0.47 1.91 16 15 C -0.10 -2.47 5.94 30.65 0.18 -2.28 16 16 C -0.13 -2.95 4.97 30.67 0.15 -2.80 16 17 C 0.18 5.45 0.86 -11.49 -0.01 5.44 16 18 O -0.55 -17.93 12.05 -148.98 -1.80 -19.73 16 19 C -0.12 -3.24 4.85 -19.87 -0.10 -3.33 16 20 C -0.13 -3.59 9.14 22.27 0.20 -3.38 16 21 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 22 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 23 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 24 C -0.12 -2.75 9.32 22.27 0.21 -2.54 16 25 C 0.08 2.93 3.60 86.33 0.31 3.24 16 26 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 27 H 0.35 17.78 9.04 -74.06 -0.67 17.12 16 28 H 0.02 1.03 8.06 -2.39 -0.02 1.01 16 29 H 0.07 2.98 7.87 -2.39 -0.02 2.96 16 30 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 2.14 7.96 -2.39 -0.02 2.12 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.75 7.80 -2.39 -0.02 1.73 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.38 8.47 7.33 -74.05 -0.54 7.93 16 37 H 0.12 3.16 6.14 -2.91 -0.02 3.14 16 38 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 39 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.14 2.48 6.49 -2.91 -0.02 2.46 16 42 H 0.04 1.90 6.46 -2.38 -0.02 1.88 16 43 H 0.05 1.61 6.46 -2.39 -0.02 1.59 16 Total: -1.00 -74.55 341.58 -2.25 -76.80 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: -0.19 Total: 37.90 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 3.25 Total: -26.60 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -3.66 Total: -80.62 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -3.68 Total: -54.06 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -74.55 -2.25 -76.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931177296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.358 kcal (2) G-P(sol) polarization free energy of solvation -74.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds