Wall clock time and date at job start Tue Mar 31 2020 07:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00004 * 2 1 4 4 H 1.48501 * 109.47294 * 240.00255 * 3 2 1 5 5 H 1.48506 * 109.47041 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47126 * 120.00006 * 3 2 1 7 7 C 1.37875 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99370 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00300 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47116 * 300.00486 * 9 7 2 11 11 O 1.42900 * 109.46921 * 60.00453 * 9 7 2 12 12 C 1.52997 * 109.47018 * 180.02562 * 9 7 2 13 13 N 1.46904 * 109.47303 * 179.73965 * 12 9 7 14 14 C 1.46854 * 110.99503 * 294.03103 * 13 12 9 15 15 C 1.53036 * 109.52114 * 174.15829 * 14 13 12 16 16 C 1.53122 * 109.27828 * 59.17844 * 15 14 13 17 17 C 1.53118 * 109.16051 * 302.34611 * 16 15 14 18 18 O 1.42892 * 109.50507 * 297.67003 * 17 16 15 19 19 C 1.50700 * 109.50080 * 177.59317 * 17 16 15 20 20 C 1.38236 * 120.00265 * 90.00033 * 19 17 16 21 21 C 1.38233 * 120.00424 * 180.02562 * 20 19 17 22 22 C 1.38239 * 119.99844 * 359.95717 * 21 20 19 23 23 C 1.38236 * 119.99676 * 0.27379 * 22 21 20 24 24 C 1.38234 * 120.00154 * 359.51902 * 23 22 21 25 25 C 1.46839 * 111.00209 * 169.82518 * 13 12 9 26 26 H 0.97004 * 120.00055 * 359.97438 * 1 2 3 27 27 H 0.96696 * 114.00062 * 59.99896 * 11 9 7 28 28 H 1.09003 * 109.47460 * 59.73781 * 12 9 7 29 29 H 1.08999 * 109.47668 * 299.73517 * 12 9 7 30 30 H 1.09001 * 109.45868 * 54.14678 * 14 13 12 31 31 H 1.08998 * 109.46681 * 294.17546 * 14 13 12 32 32 H 1.09005 * 109.50188 * 299.23977 * 15 14 13 33 33 H 1.08993 * 109.53703 * 179.14043 * 15 14 13 34 34 H 1.08998 * 109.52007 * 182.43885 * 16 15 14 35 35 H 1.09000 * 109.57260 * 62.28219 * 16 15 14 36 36 H 0.96700 * 114.00342 * 299.92726 * 18 17 16 37 37 H 1.08005 * 119.99637 * 359.97438 * 20 19 17 38 38 H 1.07992 * 119.99966 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.99901 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.99534 * 179.72285 * 23 22 21 41 41 H 1.08002 * 119.99501 * 180.25549 * 24 23 22 42 42 H 1.09003 * 109.46654 * 65.82007 * 25 13 12 43 43 H 1.09003 * 109.46210 * 305.85366 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1671 12 6 2.2452 -3.6621 -0.0005 13 7 1.5107 -4.9343 0.0058 14 6 0.7685 -5.1071 1.2611 15 6 -0.0964 -6.3667 1.1745 16 6 0.8019 -7.5802 0.9197 17 6 1.5996 -7.3536 -0.3675 18 8 0.7004 -7.2393 -1.4722 19 6 2.5299 -8.5173 -0.5943 20 6 2.1039 -9.6105 -1.3253 21 6 2.9570 -10.6782 -1.5329 22 6 4.2366 -10.6523 -1.0103 23 6 4.6609 -9.5611 -0.2753 24 6 3.8092 -8.4916 -0.0713 25 6 2.4153 -6.0654 -0.2362 26 1 -0.4850 0.8401 0.0004 27 1 0.9209 -2.5291 -1.9984 28 1 2.8750 -3.6017 0.8871 29 1 2.8688 -3.6071 -0.8928 30 1 0.1305 -4.2393 1.4281 31 1 1.4715 -5.2055 2.0882 32 1 -0.8091 -6.2632 0.3562 33 1 -0.6358 -6.5036 2.1116 34 1 0.1861 -8.4734 0.8142 35 1 1.4889 -7.7081 1.7562 36 1 0.1494 -8.0214 -1.6134 37 1 1.1042 -9.6308 -1.7335 38 1 2.6240 -11.5324 -2.1036 39 1 4.9032 -11.4862 -1.1728 40 1 5.6590 -9.5429 0.1368 41 1 4.1423 -7.6374 0.4995 42 1 3.1107 -6.1593 0.5979 43 1 2.9735 -5.8936 -1.1565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931177299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:10 Heat of formation + Delta-G solvation = -68.058515 kcal Electronic energy + Delta-G solvation = -23847.179060 eV Core-core repulsion = 20471.071861 eV Total energy + Delta-G solvation = -3376.107199 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35858 -38.32931 -36.40450 -34.82042 -32.42697 -31.99277 -31.89612 -30.98245 -28.86679 -27.89818 -25.21512 -23.72085 -23.13379 -22.24845 -21.45443 -19.95602 -19.51425 -17.67884 -16.92075 -16.03616 -15.68153 -15.35946 -14.93416 -14.59653 -14.48619 -14.31140 -14.19374 -13.79814 -13.55146 -13.34835 -13.00509 -12.91918 -12.47725 -12.30674 -12.20232 -11.93652 -11.43139 -11.18864 -11.08765 -10.98434 -10.86587 -10.77594 -10.66843 -10.38424 -10.20964 -9.92686 -9.76155 -9.08692 -8.90818 -8.83065 -8.50504 -8.00160 -7.49992 -5.94986 -4.13319 1.17380 1.23269 3.31807 3.37041 3.38645 3.59467 4.20020 4.38811 4.45285 4.62034 4.74656 4.80447 4.92426 4.93611 5.03381 5.27811 5.29149 5.32536 5.40913 5.52356 5.71200 5.77326 5.79424 5.85089 5.87941 5.92510 6.03024 6.07176 6.20318 6.29398 6.33696 6.35989 6.44888 6.54109 6.58042 6.68677 6.81909 6.88661 7.62716 7.69144 7.81295 7.85620 7.96323 8.26906 8.90551 9.53431 9.71158 11.09017 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028771 B = 0.003564 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.962771 B = 7854.107594 C = 8269.159628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.575 4.575 8 H 0.053 0.947 9 C 0.239 3.761 10 H 0.054 0.946 11 O -0.552 6.552 12 C 0.031 3.969 13 N -0.513 5.513 14 C 0.055 3.945 15 C -0.111 4.111 16 C -0.138 4.138 17 C 0.180 3.820 18 O -0.525 6.525 19 C -0.101 4.101 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.118 4.118 24 C -0.114 4.114 25 C 0.073 3.927 26 H 0.260 0.740 27 H 0.342 0.658 28 H 0.024 0.976 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.020 0.980 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.362 0.638 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.038 0.962 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.130 -21.291 0.569 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.614 4.614 8 H 0.071 0.929 9 C 0.181 3.819 10 H 0.071 0.929 11 O -0.353 6.353 12 C -0.096 4.096 13 N -0.237 5.237 14 C -0.073 4.073 15 C -0.149 4.149 16 C -0.176 4.176 17 C 0.138 3.862 18 O -0.329 6.329 19 C -0.102 4.102 20 C -0.130 4.130 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.136 4.136 24 C -0.132 4.132 25 C -0.056 4.056 26 H 0.070 0.930 27 H 0.185 0.815 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.038 0.962 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.208 0.792 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.056 0.944 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.411 -20.603 0.610 21.079 hybrid contribution 1.512 0.318 0.392 1.594 sum 5.923 -20.286 1.002 21.157 Atomic orbital electron populations 1.70079 1.05876 1.26425 1.47013 1.25017 0.94678 0.98996 0.93922 0.86748 0.79719 0.83312 0.78624 1.20150 1.21213 1.20276 1.21643 0.93082 0.91736 1.54900 0.92870 1.19284 0.87727 0.88322 0.86583 0.92875 1.86557 1.37585 1.96282 1.14911 1.23097 0.97295 0.89905 0.99341 1.61810 1.26796 1.01112 1.33975 1.22115 0.96813 0.98687 0.89726 1.21513 0.98161 0.93369 1.01846 1.22246 0.99072 0.98961 0.97300 1.19993 0.87869 0.91712 0.86594 1.86830 1.53988 1.42535 1.49555 1.20642 0.95540 0.96219 0.97800 1.20887 0.99954 0.93362 0.98842 1.21100 0.94144 0.98395 1.00013 1.21146 0.96284 0.98473 0.98518 1.21162 0.99646 0.93884 0.98941 1.21153 0.93301 0.98696 1.00014 1.22054 0.93225 0.89678 1.00617 0.92986 0.81454 0.95813 0.91907 0.89459 0.96151 0.90206 0.91947 0.91877 0.91597 0.79158 0.86117 0.86105 0.86249 0.86067 0.85703 0.94393 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.75 12.84 55.43 0.71 -25.03 16 2 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.58 -16.03 8.76 -34.44 -0.30 -16.33 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.24 6.18 2.71 -27.88 -0.08 6.10 16 10 H 0.05 1.50 6.42 -51.93 -0.33 1.17 16 11 O -0.55 -14.91 12.60 -35.23 -0.44 -15.35 16 12 C 0.03 0.66 4.56 -3.82 -0.02 0.64 16 13 N -0.51 -9.70 4.41 -234.67 -1.04 -10.74 16 14 C 0.05 0.96 5.29 -3.83 -0.02 0.94 16 15 C -0.11 -1.60 5.94 -26.65 -0.16 -1.76 16 16 C -0.14 -1.70 4.97 -26.61 -0.13 -1.83 16 17 C 0.18 2.41 0.86 -91.69 -0.08 2.33 16 18 O -0.53 -7.59 12.05 -35.23 -0.42 -8.02 16 19 C -0.10 -1.20 4.85 -104.62 -0.51 -1.71 16 20 C -0.11 -1.16 9.32 -39.58 -0.37 -1.53 16 21 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 22 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.11 -1.29 9.14 -39.58 -0.36 -1.65 16 25 C 0.07 1.15 3.76 -3.84 -0.01 1.13 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.34 8.46 9.04 45.56 0.41 8.87 16 28 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.06 1.32 7.98 -51.93 -0.41 0.91 16 30 H 0.09 1.76 6.21 -51.93 -0.32 1.43 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 1.26 7.80 -51.93 -0.40 0.86 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.36 3.71 7.33 45.56 0.33 4.05 16 37 H 0.12 1.01 6.49 -52.48 -0.34 0.67 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.13 1.36 6.14 -52.49 -0.32 1.04 16 42 H 0.04 0.56 6.46 -51.93 -0.34 0.22 16 43 H 0.08 1.28 8.01 -51.93 -0.42 0.86 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -32.52 341.27 -9.46 -41.98 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.07 Total: 11.72 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -3.33 Total: -16.09 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.32 Total: -35.77 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.87 Total: -23.37 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.52 -9.46 -41.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931177299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.076 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds