Wall clock time and date at job start Tue Mar 31 2020 07:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00004 * 2 1 4 4 H 1.48501 * 109.47294 * 240.00255 * 3 2 1 5 5 H 1.48506 * 109.47041 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47126 * 120.00006 * 3 2 1 7 7 C 1.37875 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99370 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00300 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47116 * 300.00486 * 9 7 2 11 11 O 1.42900 * 109.46921 * 60.00453 * 9 7 2 12 12 C 1.52997 * 109.47018 * 180.02562 * 9 7 2 13 13 N 1.46904 * 109.47303 * 179.73965 * 12 9 7 14 14 C 1.46854 * 110.99503 * 294.03103 * 13 12 9 15 15 C 1.53036 * 109.52114 * 174.15829 * 14 13 12 16 16 C 1.53122 * 109.27828 * 59.17844 * 15 14 13 17 17 C 1.53118 * 109.16051 * 302.34611 * 16 15 14 18 18 O 1.42892 * 109.50507 * 297.67003 * 17 16 15 19 19 C 1.50700 * 109.50080 * 177.59317 * 17 16 15 20 20 C 1.38236 * 120.00265 * 90.00033 * 19 17 16 21 21 C 1.38233 * 120.00424 * 180.02562 * 20 19 17 22 22 C 1.38239 * 119.99844 * 359.95717 * 21 20 19 23 23 C 1.38236 * 119.99676 * 0.27379 * 22 21 20 24 24 C 1.38234 * 120.00154 * 359.51902 * 23 22 21 25 25 C 1.46839 * 111.00209 * 169.82518 * 13 12 9 26 26 H 0.97004 * 120.00055 * 359.97438 * 1 2 3 27 27 H 0.96696 * 114.00062 * 59.99896 * 11 9 7 28 28 H 1.09003 * 109.47460 * 59.73781 * 12 9 7 29 29 H 1.08999 * 109.47668 * 299.73517 * 12 9 7 30 30 H 1.09001 * 109.45868 * 54.14678 * 14 13 12 31 31 H 1.08998 * 109.46681 * 294.17546 * 14 13 12 32 32 H 1.09005 * 109.50188 * 299.23977 * 15 14 13 33 33 H 1.08993 * 109.53703 * 179.14043 * 15 14 13 34 34 H 1.08998 * 109.52007 * 182.43885 * 16 15 14 35 35 H 1.09000 * 109.57260 * 62.28219 * 16 15 14 36 36 H 0.96700 * 114.00342 * 299.92726 * 18 17 16 37 37 H 1.08005 * 119.99637 * 359.97438 * 20 19 17 38 38 H 1.07992 * 119.99966 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.99901 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.99534 * 179.72285 * 23 22 21 41 41 H 1.08002 * 119.99501 * 180.25549 * 24 23 22 42 42 H 1.09003 * 109.46654 * 65.82007 * 25 13 12 43 43 H 1.09003 * 109.46210 * 305.85366 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1671 12 6 2.2452 -3.6621 -0.0005 13 7 1.5107 -4.9343 0.0058 14 6 0.7685 -5.1071 1.2611 15 6 -0.0964 -6.3667 1.1745 16 6 0.8019 -7.5802 0.9197 17 6 1.5996 -7.3536 -0.3675 18 8 0.7004 -7.2393 -1.4722 19 6 2.5299 -8.5173 -0.5943 20 6 2.1039 -9.6105 -1.3253 21 6 2.9570 -10.6782 -1.5329 22 6 4.2366 -10.6523 -1.0103 23 6 4.6609 -9.5611 -0.2753 24 6 3.8092 -8.4916 -0.0713 25 6 2.4153 -6.0654 -0.2362 26 1 -0.4850 0.8401 0.0004 27 1 0.9209 -2.5291 -1.9984 28 1 2.8750 -3.6017 0.8871 29 1 2.8688 -3.6071 -0.8928 30 1 0.1305 -4.2393 1.4281 31 1 1.4715 -5.2055 2.0882 32 1 -0.8091 -6.2632 0.3562 33 1 -0.6358 -6.5036 2.1116 34 1 0.1861 -8.4734 0.8142 35 1 1.4889 -7.7081 1.7562 36 1 0.1494 -8.0214 -1.6134 37 1 1.1042 -9.6308 -1.7335 38 1 2.6240 -11.5324 -2.1036 39 1 4.9032 -11.4862 -1.1728 40 1 5.6590 -9.5429 0.1368 41 1 4.1423 -7.6374 0.4995 42 1 3.1107 -6.1593 0.5979 43 1 2.9735 -5.8936 -1.1565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931177299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:09 Heat of formation + Delta-G solvation = -92.580062 kcal Electronic energy + Delta-G solvation = -23848.242394 eV Core-core repulsion = 20471.071861 eV Total energy + Delta-G solvation = -3377.170533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.35724 -39.41728 -37.92970 -36.45230 -34.22362 -33.68170 -32.89119 -31.72351 -30.34987 -29.34926 -26.99861 -24.87869 -24.44560 -23.16322 -22.72298 -21.48493 -20.70366 -19.11032 -18.46175 -17.15472 -16.68342 -16.66439 -16.46376 -16.21163 -16.04313 -15.85044 -15.17490 -15.06502 -14.84995 -14.57621 -14.42214 -14.03655 -13.95310 -13.46976 -13.29393 -13.16148 -12.96496 -12.80764 -12.75800 -12.42820 -12.34513 -12.08095 -12.02511 -11.87769 -11.75861 -11.34040 -10.96574 -10.75799 -10.65508 -10.07989 -9.81729 -9.62618 -9.02198 -8.12289 -6.38918 0.41509 0.50276 1.40155 1.42440 1.50550 2.38550 2.83582 2.95132 3.13444 3.41329 3.59932 3.78233 3.84767 4.05825 4.14277 4.16476 4.22629 4.31496 4.31951 4.44005 4.47677 4.55015 4.60725 4.64497 4.71432 4.80241 4.86194 4.92594 4.98591 5.03162 5.06210 5.14140 5.20195 5.40627 5.57217 5.60488 5.62631 5.66736 5.76525 6.02885 6.10621 6.23389 6.33508 6.74482 6.94791 7.35102 7.62801 8.92034 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028771 B = 0.003564 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.962771 B = 7854.107594 C = 8269.159628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.591 4.591 8 H 0.058 0.942 9 C 0.240 3.760 10 H 0.021 0.979 11 O -0.569 6.569 12 C 0.048 3.952 13 N -0.527 5.527 14 C 0.053 3.947 15 C -0.104 4.104 16 C -0.130 4.130 17 C 0.186 3.814 18 O -0.550 6.550 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.131 4.131 25 C 0.072 3.928 26 H 0.261 0.739 27 H 0.350 0.650 28 H 0.025 0.975 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.379 0.621 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.121 0.879 42 H 0.051 0.949 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.481 -23.236 0.463 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.630 4.630 8 H 0.076 0.924 9 C 0.182 3.818 10 H 0.039 0.961 11 O -0.371 6.371 12 C -0.080 4.080 13 N -0.251 5.251 14 C -0.074 4.074 15 C -0.142 4.142 16 C -0.168 4.168 17 C 0.145 3.855 18 O -0.357 6.357 19 C -0.117 4.117 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.149 4.149 25 C -0.056 4.056 26 H 0.070 0.930 27 H 0.194 0.806 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.228 0.772 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.139 0.861 42 H 0.068 0.932 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.772 -22.579 0.503 23.310 hybrid contribution 1.091 0.848 0.401 1.439 sum 6.863 -21.731 0.904 22.807 Atomic orbital electron populations 1.70230 1.07695 1.27411 1.48264 1.25917 0.95504 1.02942 0.93332 0.85588 0.78343 0.78362 0.79115 1.19199 1.20924 1.19263 1.22042 0.93507 0.92895 1.54525 0.92357 1.19149 0.87717 0.89867 0.85062 0.96090 1.86505 1.38560 1.96458 1.15624 1.22694 0.95965 0.89990 0.99364 1.61727 1.27461 1.01082 1.34856 1.22109 0.96801 0.98971 0.89560 1.21454 0.97734 0.92720 1.02282 1.22199 0.98953 0.98617 0.97023 1.19844 0.87949 0.90914 0.86815 1.86774 1.54656 1.44180 1.50055 1.20499 0.95549 0.96213 0.99399 1.21132 1.01040 0.93175 0.98453 1.21447 0.94035 0.98747 0.99726 1.21518 0.96690 0.98822 0.97501 1.21425 1.00274 0.93654 0.98983 1.21249 0.93623 0.99346 1.00646 1.22116 0.93366 0.89723 1.00385 0.92984 0.80606 0.95711 0.91814 0.93096 0.95235 0.91920 0.89906 0.89389 0.90832 0.77158 0.84575 0.83685 0.83798 0.84346 0.86112 0.93150 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.28 12.84 21.45 0.28 -55.00 16 2 C 0.03 1.46 5.40 84.65 0.46 1.92 16 3 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.59 -33.58 8.76 25.60 0.22 -33.36 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.24 12.90 2.71 29.85 0.08 12.98 16 10 H 0.02 1.27 6.42 -2.39 -0.02 1.26 16 11 O -0.57 -31.90 12.60 -148.98 -1.88 -33.77 16 12 C 0.05 2.10 4.56 86.30 0.39 2.49 16 13 N -0.53 -20.37 4.41 -896.35 -3.95 -24.32 16 14 C 0.05 1.93 5.29 86.32 0.46 2.39 16 15 C -0.10 -2.94 5.94 30.65 0.18 -2.76 16 16 C -0.13 -2.98 4.97 30.67 0.15 -2.83 16 17 C 0.19 4.78 0.86 -11.49 -0.01 4.77 16 18 O -0.55 -15.44 12.05 -148.98 -1.80 -17.24 16 19 C -0.12 -2.55 4.85 -19.87 -0.10 -2.65 16 20 C -0.12 -2.19 9.32 22.27 0.21 -1.98 16 21 C -0.12 -1.88 10.05 22.27 0.22 -1.65 16 22 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 23 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 24 C -0.13 -2.76 9.14 22.27 0.20 -2.56 16 25 C 0.07 2.27 3.76 86.33 0.32 2.59 16 26 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 27 H 0.35 17.90 9.04 -74.06 -0.67 17.23 16 28 H 0.02 1.06 8.12 -2.39 -0.02 1.04 16 29 H 0.06 2.74 7.98 -2.39 -0.02 2.72 16 30 H 0.05 2.18 6.21 -2.39 -0.01 2.17 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.99 7.80 -2.38 -0.02 1.97 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.38 7.22 7.33 -74.06 -0.54 6.67 16 37 H 0.14 1.93 6.49 -2.91 -0.02 1.91 16 38 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 39 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.12 2.53 6.14 -2.91 -0.02 2.51 16 42 H 0.05 1.45 6.46 -2.39 -0.02 1.44 16 43 H 0.06 2.16 8.01 -2.39 -0.02 2.14 16 Total: -1.00 -71.13 341.27 -2.27 -73.40 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.19 Total: 35.01 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 3.25 Total: -24.32 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -3.68 Total: -79.33 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -3.67 Total: -51.01 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -71.13 -2.27 -73.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931177299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.177 kcal (2) G-P(sol) polarization free energy of solvation -71.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds