Wall clock time and date at job start Tue Mar 31 2020 09:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 115.55199 * 2 1 4 4 C 1.53000 * 109.46835 * 34.33621 * 3 2 1 5 5 C 1.50706 * 109.47492 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99660 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00094 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99594 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46928 * 90.00049 * 8 7 5 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99865 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00518 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99987 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46922 * 90.00621 * 13 11 9 15 15 H 1.48500 * 109.47411 * 210.00442 * 13 11 9 16 16 H 1.48494 * 109.47378 * 330.00637 * 13 11 9 17 17 C 1.46501 * 120.00308 * 359.97438 * 7 5 4 18 18 C 1.50700 * 109.46743 * 269.99953 * 17 7 5 19 19 C 1.34513 * 125.78891 * 89.71900 * 18 17 7 20 20 C 1.41376 * 106.84199 * 179.88291 * 19 18 17 21 21 C 1.34516 * 106.84053 * 0.37321 * 20 19 18 22 22 O 1.34300 * 125.78900 * 270.01866 * 18 17 7 23 23 C 1.53001 * 117.52148 * 145.70791 * 2 1 3 24 24 C 1.53004 * 117.49456 * 214.33797 * 2 1 3 25 25 H 1.08998 * 109.47496 * 85.57795 * 1 2 3 26 26 H 1.09003 * 109.46765 * 205.57951 * 1 2 3 27 27 H 1.09001 * 109.46794 * 325.57258 * 1 2 3 28 28 H 1.08996 * 109.47799 * 274.33806 * 3 2 1 29 29 H 1.09000 * 109.47029 * 154.33184 * 3 2 1 30 30 H 1.08997 * 109.47467 * 59.99843 * 4 3 2 31 31 H 1.09004 * 109.47390 * 299.99769 * 4 3 2 32 32 H 1.09004 * 109.47073 * 209.99877 * 8 7 5 33 33 H 1.09000 * 109.47212 * 329.99960 * 8 7 5 34 34 H 0.96992 * 120.00316 * 179.97438 * 12 11 9 35 35 H 1.09000 * 109.46877 * 29.99967 * 17 7 5 36 36 H 1.09000 * 109.47251 * 150.00072 * 17 7 5 37 37 H 1.08003 * 126.57526 * 0.02562 * 19 18 17 38 38 H 1.08005 * 126.58338 * 180.16025 * 20 19 18 39 39 H 1.08002 * 125.78873 * 179.74611 * 21 20 19 40 40 H 1.08995 * 117.49886 * 214.96407 * 23 2 1 41 41 H 1.09002 * 117.49545 * 359.97438 * 23 2 1 42 42 H 1.08992 * 117.50411 * 359.97280 * 24 2 1 43 43 H 1.09007 * 117.49867 * 144.99772 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 1.3352 2.3542 0.8137 5 6 1.9854 3.7137 0.8143 6 8 3.0299 3.8866 0.2226 7 7 1.4068 4.7371 1.4732 8 6 2.0393 6.0586 1.4742 9 6 1.5335 6.8584 0.3013 10 1 0.8127 6.4258 -0.3767 11 6 1.9902 8.1428 0.0945 12 7 2.8676 8.6698 0.9204 13 14 1.3638 9.1340 -1.3597 14 1 0.1542 9.8949 -0.9558 15 1 2.4182 10.0803 -1.8047 16 1 1.0211 8.2149 -2.4744 17 6 0.1454 4.5282 2.1884 18 6 -1.0096 4.8034 1.2604 19 6 -1.6106 3.9015 0.4636 20 6 -2.6381 4.5848 -0.2264 21 6 -2.5982 5.8653 0.1838 22 8 -1.6099 5.9918 1.0844 23 6 2.2370 -1.1210 0.7645 24 6 2.2364 -1.1207 -0.7656 25 1 -0.3634 0.0792 -1.0246 26 1 -0.3633 -0.9270 0.4437 27 1 -0.3633 0.8477 0.5810 28 1 2.2765 1.7417 -1.0246 29 1 3.1823 1.3086 0.4451 30 1 1.2485 1.9929 1.8383 31 1 0.3428 2.4259 0.3686 32 1 1.7945 6.5779 2.4008 33 1 3.1205 5.9440 1.3966 34 1 3.1891 9.5732 0.7747 35 1 0.0927 3.4973 2.5384 36 1 0.0951 5.2047 3.0416 37 1 -1.3583 2.8555 0.3707 38 1 -3.3215 4.1610 -0.9474 39 1 -3.2500 6.6574 -0.1540 40 1 3.1722 -0.8751 1.2674 41 1 1.6120 -1.8586 1.2680 42 1 1.6112 -1.8582 -1.2688 43 1 3.1713 -0.8746 -1.2691 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931269564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:41 Heat of formation + Delta-G solvation = -0.108937 kcal Electronic energy + Delta-G solvation = -23964.036984 eV Core-core repulsion = 20590.876299 eV Total energy + Delta-G solvation = -3373.160684 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.11110 -39.34054 -38.07307 -35.18525 -33.02332 -32.40662 -31.92233 -30.01771 -28.37801 -27.40931 -25.62095 -24.52667 -22.52445 -22.20234 -21.32653 -20.39429 -18.81803 -18.36212 -17.28314 -16.67191 -16.26019 -15.46957 -15.23733 -15.15333 -15.03445 -14.47141 -14.27587 -13.92005 -13.33534 -13.00315 -12.69196 -12.54145 -12.43101 -12.34877 -12.12028 -12.07534 -11.94125 -11.60996 -11.47569 -11.18151 -11.01781 -10.89629 -10.77417 -10.55923 -10.16336 -10.08870 -9.62323 -9.57681 -9.51247 -8.91016 -8.39064 -8.15486 -7.75204 -5.99671 -4.01877 2.12556 2.93460 3.29268 3.32775 3.38889 3.43939 3.58809 3.69365 3.97580 4.48952 4.66127 4.71745 4.88937 4.95793 5.05859 5.19441 5.26058 5.34671 5.36051 5.41143 5.42399 5.53644 5.57745 5.66401 5.72550 5.79550 5.83633 5.85653 6.04506 6.08076 6.12193 6.12818 6.25466 6.33415 6.46396 6.48032 6.85143 7.02637 7.42386 7.49848 7.61345 7.96837 8.27425 8.34277 8.93630 9.08190 9.62108 11.09150 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015089 B = 0.005263 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.245333 B = 5319.309758 C = 6334.658823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.125 4.125 3 C -0.065 4.065 4 C -0.147 4.147 5 C 0.508 3.492 6 O -0.535 6.535 7 N -0.596 5.596 8 C 0.244 3.756 9 C -0.513 4.513 10 H 0.056 0.944 11 C 0.062 3.938 12 N -0.897 5.897 13 Si 0.894 3.106 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.188 3.812 18 C -0.002 4.002 19 C -0.221 4.221 20 C -0.221 4.221 21 C -0.041 4.041 22 O -0.151 6.151 23 C -0.177 4.177 24 C -0.178 4.178 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.032 0.968 33 H 0.046 0.954 34 H 0.262 0.738 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.195 0.805 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.458 -15.844 1.902 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.187 4.187 5 C 0.295 3.705 6 O -0.412 6.412 7 N -0.328 5.328 8 C 0.125 3.875 9 C -0.552 4.552 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.537 5.537 13 Si 0.722 3.278 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.200 1.200 17 C 0.064 3.936 18 C -0.055 4.055 19 C -0.241 4.241 20 C -0.240 4.240 21 C -0.110 4.110 22 O -0.045 6.045 23 C -0.214 4.214 24 C -0.215 4.215 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.212 0.788 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.665 -15.285 1.788 17.661 hybrid contribution -0.607 0.580 -1.139 1.415 sum -9.272 -14.705 0.649 17.396 Atomic orbital electron populations 1.21497 0.92289 1.02047 1.02100 1.21556 0.94732 0.91282 1.04902 1.20840 0.98025 0.90297 1.01103 1.21974 1.01191 0.93515 1.02030 1.20463 0.85285 0.85858 0.78887 1.90671 1.23569 1.84279 1.42675 1.48362 1.20922 1.12696 1.50825 1.19363 0.94560 0.76211 0.97323 1.21341 1.24741 0.98248 1.10857 0.92609 1.24876 0.95018 0.97579 0.96508 1.69921 1.30903 1.15682 1.37199 0.86556 0.78403 0.79878 0.82982 1.20689 1.21163 1.20017 1.19856 0.79613 1.02039 0.92127 1.23033 0.97332 0.82881 1.02227 1.21533 1.00255 1.00553 1.01773 1.21680 1.02789 0.94364 1.05175 1.23954 0.93498 0.98603 0.94974 1.84150 1.38088 1.33039 1.49222 1.23162 1.02537 1.01380 0.94344 1.23010 1.02632 1.01438 0.94388 0.92205 0.92699 0.91364 0.90843 0.91091 0.89547 0.88675 0.94971 0.93609 0.92849 0.88344 0.88807 0.83991 0.84126 0.78834 0.88855 0.89132 0.89088 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.49 37.16 0.35 -0.82 16 2 C -0.12 -1.37 2.47 -154.51 -0.38 -1.75 16 3 C -0.06 -0.91 4.69 -26.73 -0.13 -1.03 16 4 C -0.15 -2.12 3.26 -27.88 -0.09 -2.21 16 5 C 0.51 10.38 7.67 -10.99 -0.08 10.29 16 6 O -0.54 -13.38 15.56 5.56 0.09 -13.30 16 7 N -0.60 -12.43 2.44 -176.43 -0.43 -12.87 16 8 C 0.24 6.38 5.20 -5.19 -0.03 6.35 16 9 C -0.51 -14.70 9.39 -34.44 -0.32 -15.03 16 10 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 11 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 12 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 13 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 C 0.19 3.03 5.79 -5.19 -0.03 3.00 16 18 C 0.00 -0.03 6.90 -35.62 -0.25 -0.28 16 19 C -0.22 -3.35 9.99 -39.71 -0.40 -3.74 16 20 C -0.22 -3.21 10.91 -39.70 -0.43 -3.65 16 21 C -0.04 -0.64 12.09 29.42 0.36 -0.29 16 22 O -0.15 -2.86 10.65 5.71 0.06 -2.80 16 23 C -0.18 -1.74 9.82 -26.73 -0.26 -2.00 16 24 C -0.18 -1.79 9.97 -26.73 -0.27 -2.06 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.45 7.90 -51.93 -0.41 0.04 16 27 H 0.07 0.63 5.17 -51.93 -0.27 0.36 16 28 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 29 H 0.07 1.05 7.86 -51.93 -0.41 0.64 16 30 H 0.09 1.02 7.40 -51.93 -0.38 0.64 16 31 H 0.10 1.27 3.48 -51.93 -0.18 1.09 16 32 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 33 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.10 1.17 6.44 -51.93 -0.33 0.84 16 36 H 0.09 1.45 7.89 -51.93 -0.41 1.04 16 37 H 0.14 1.79 5.73 -52.48 -0.30 1.48 16 38 H 0.14 1.66 8.06 -52.48 -0.42 1.23 16 39 H 0.19 2.31 8.06 -52.49 -0.42 1.89 16 40 H 0.09 0.93 8.05 -51.93 -0.42 0.51 16 41 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -34.25 353.94 -7.70 -41.95 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.41 Total: 1.97 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.06 Total: -11.52 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.31 Total: -39.11 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.15 Total: -16.10 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.25 -7.70 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931269564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.838 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds