Wall clock time and date at job start Tue Mar 31 2020 09:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 115.55199 * 2 1 4 4 C 1.53000 * 109.46835 * 34.33621 * 3 2 1 5 5 C 1.50706 * 109.47492 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99660 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00094 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99594 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46928 * 90.00049 * 8 7 5 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99865 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00518 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99987 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46922 * 90.00621 * 13 11 9 15 15 H 1.48500 * 109.47411 * 210.00442 * 13 11 9 16 16 H 1.48494 * 109.47378 * 330.00637 * 13 11 9 17 17 C 1.46501 * 120.00308 * 359.97438 * 7 5 4 18 18 C 1.50700 * 109.46743 * 269.99953 * 17 7 5 19 19 C 1.34513 * 125.78891 * 89.71900 * 18 17 7 20 20 C 1.41376 * 106.84199 * 179.88291 * 19 18 17 21 21 C 1.34516 * 106.84053 * 0.37321 * 20 19 18 22 22 O 1.34300 * 125.78900 * 270.01866 * 18 17 7 23 23 C 1.53001 * 117.52148 * 145.70791 * 2 1 3 24 24 C 1.53004 * 117.49456 * 214.33797 * 2 1 3 25 25 H 1.08998 * 109.47496 * 85.57795 * 1 2 3 26 26 H 1.09003 * 109.46765 * 205.57951 * 1 2 3 27 27 H 1.09001 * 109.46794 * 325.57258 * 1 2 3 28 28 H 1.08996 * 109.47799 * 274.33806 * 3 2 1 29 29 H 1.09000 * 109.47029 * 154.33184 * 3 2 1 30 30 H 1.08997 * 109.47467 * 59.99843 * 4 3 2 31 31 H 1.09004 * 109.47390 * 299.99769 * 4 3 2 32 32 H 1.09004 * 109.47073 * 209.99877 * 8 7 5 33 33 H 1.09000 * 109.47212 * 329.99960 * 8 7 5 34 34 H 0.96992 * 120.00316 * 179.97438 * 12 11 9 35 35 H 1.09000 * 109.46877 * 29.99967 * 17 7 5 36 36 H 1.09000 * 109.47251 * 150.00072 * 17 7 5 37 37 H 1.08003 * 126.57526 * 0.02562 * 19 18 17 38 38 H 1.08005 * 126.58338 * 180.16025 * 20 19 18 39 39 H 1.08002 * 125.78873 * 179.74611 * 21 20 19 40 40 H 1.08995 * 117.49886 * 214.96407 * 23 2 1 41 41 H 1.09002 * 117.49545 * 359.97438 * 23 2 1 42 42 H 1.08992 * 117.50411 * 359.97280 * 24 2 1 43 43 H 1.09007 * 117.49867 * 144.99772 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 1.3352 2.3542 0.8137 5 6 1.9854 3.7137 0.8143 6 8 3.0299 3.8866 0.2226 7 7 1.4068 4.7371 1.4732 8 6 2.0393 6.0586 1.4742 9 6 1.5335 6.8584 0.3013 10 1 0.8127 6.4258 -0.3767 11 6 1.9902 8.1428 0.0945 12 7 2.8676 8.6698 0.9204 13 14 1.3638 9.1340 -1.3597 14 1 0.1542 9.8949 -0.9558 15 1 2.4182 10.0803 -1.8047 16 1 1.0211 8.2149 -2.4744 17 6 0.1454 4.5282 2.1884 18 6 -1.0096 4.8034 1.2604 19 6 -1.6106 3.9015 0.4636 20 6 -2.6381 4.5848 -0.2264 21 6 -2.5982 5.8653 0.1838 22 8 -1.6099 5.9918 1.0844 23 6 2.2370 -1.1210 0.7645 24 6 2.2364 -1.1207 -0.7656 25 1 -0.3634 0.0792 -1.0246 26 1 -0.3633 -0.9270 0.4437 27 1 -0.3633 0.8477 0.5810 28 1 2.2765 1.7417 -1.0246 29 1 3.1823 1.3086 0.4451 30 1 1.2485 1.9929 1.8383 31 1 0.3428 2.4259 0.3686 32 1 1.7945 6.5779 2.4008 33 1 3.1205 5.9440 1.3966 34 1 3.1891 9.5732 0.7747 35 1 0.0927 3.4973 2.5384 36 1 0.0951 5.2047 3.0416 37 1 -1.3583 2.8555 0.3707 38 1 -3.3215 4.1610 -0.9474 39 1 -3.2500 6.6574 -0.1540 40 1 3.1722 -0.8751 1.2674 41 1 1.6120 -1.8586 1.2680 42 1 1.6112 -1.8582 -1.2688 43 1 3.1713 -0.8746 -1.2691 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931269564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:38 Heat of formation + Delta-G solvation = -20.254129 kcal Electronic energy + Delta-G solvation = -23964.910545 eV Core-core repulsion = 20590.876299 eV Total energy + Delta-G solvation = -3374.034246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.33585 -40.84046 -39.07257 -36.87852 -34.94997 -33.80351 -33.18574 -31.43272 -29.56107 -28.88380 -26.90616 -26.13886 -24.06053 -23.21012 -22.51659 -21.66943 -20.01744 -19.57196 -18.81003 -18.44781 -17.76417 -17.13460 -16.58332 -16.52937 -16.15304 -16.05393 -15.66805 -15.02894 -14.70454 -14.24866 -14.11965 -13.84892 -13.71977 -13.57671 -13.52723 -13.41698 -13.12003 -12.95926 -12.88340 -12.73486 -12.43587 -12.31072 -12.22545 -11.99954 -11.84801 -11.74430 -10.95230 -10.69440 -10.63308 -10.60503 -10.41575 -9.67104 -9.26274 -8.22268 -6.32980 0.87677 1.30952 1.33826 1.43640 1.73488 1.84244 2.32180 2.36394 2.48506 2.91259 3.08332 3.61241 3.79077 3.90222 3.97619 4.07459 4.08417 4.16601 4.25131 4.34821 4.38702 4.47614 4.53149 4.68159 4.84490 4.93269 4.96140 5.01506 5.04191 5.08211 5.09426 5.18745 5.22192 5.23745 5.30938 5.32989 5.34523 5.52365 5.54134 5.74875 5.80644 6.07242 6.39429 6.67588 6.75913 7.29438 7.45644 8.85703 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015089 B = 0.005263 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.245333 B = 5319.309758 C = 6334.658823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.132 4.132 3 C -0.062 4.062 4 C -0.129 4.129 5 C 0.497 3.503 6 O -0.594 6.594 7 N -0.600 5.600 8 C 0.259 3.741 9 C -0.520 4.520 10 H 0.044 0.956 11 C 0.009 3.991 12 N -0.929 5.929 13 Si 0.957 3.043 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.277 1.277 17 C 0.184 3.816 18 C -0.036 4.036 19 C -0.210 4.210 20 C -0.223 4.223 21 C -0.057 4.057 22 O -0.189 6.189 23 C -0.168 4.168 24 C -0.181 4.181 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.023 0.977 33 H 0.001 0.999 34 H 0.265 0.735 35 H 0.148 0.852 36 H 0.093 0.907 37 H 0.171 0.829 38 H 0.171 0.829 39 H 0.221 0.779 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.146 -17.894 1.561 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.132 4.132 3 C -0.100 4.100 4 C -0.168 4.168 5 C 0.288 3.712 6 O -0.475 6.475 7 N -0.331 5.331 8 C 0.138 3.862 9 C -0.559 4.559 10 H 0.062 0.938 11 C -0.190 4.190 12 N -0.570 5.570 13 Si 0.782 3.218 14 H -0.189 1.189 15 H -0.205 1.205 16 H -0.202 1.202 17 C 0.061 3.939 18 C -0.088 4.088 19 C -0.230 4.230 20 C -0.241 4.241 21 C -0.125 4.125 22 O -0.085 6.085 23 C -0.204 4.204 24 C -0.218 4.218 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.142 0.858 31 H 0.132 0.868 32 H 0.041 0.959 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.166 0.834 36 H 0.112 0.888 37 H 0.188 0.812 38 H 0.189 0.811 39 H 0.238 0.762 40 H 0.106 0.894 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.398 -17.361 1.471 20.821 hybrid contribution 0.231 1.201 -1.034 1.602 sum -11.167 -16.160 0.437 19.648 Atomic orbital electron populations 1.21524 0.90592 1.03298 1.02442 1.21470 0.95824 0.89493 1.06403 1.20748 0.97737 0.92290 0.99206 1.21974 1.01031 0.89306 1.04477 1.21607 0.84589 0.87691 0.77341 1.90638 1.26300 1.85446 1.45120 1.48320 1.22590 1.10797 1.51355 1.18794 0.92375 0.78928 0.96124 1.21495 1.24349 0.98766 1.11257 0.93809 1.25727 0.95216 0.98775 0.99240 1.70031 1.31927 1.16165 1.38850 0.85567 0.78473 0.78355 0.79379 1.18932 1.20484 1.20248 1.20241 0.77181 1.04966 0.91491 1.23221 0.98435 0.83150 1.03963 1.21938 0.99376 1.01550 1.00133 1.22113 1.02878 0.93930 1.05220 1.24688 0.93185 1.00267 0.94370 1.84112 1.39409 1.34365 1.50584 1.23232 1.02361 1.00768 0.94085 1.23084 1.02397 1.01323 0.94974 0.92240 0.90820 0.90840 0.93596 0.92764 0.85845 0.86826 0.95904 0.98050 0.92571 0.83416 0.88848 0.81206 0.81134 0.76245 0.89437 0.87040 0.87456 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.49 71.98 0.68 -1.15 16 2 C -0.13 -2.57 2.47 -52.18 -0.13 -2.70 16 3 C -0.06 -1.69 4.69 30.59 0.14 -1.55 16 4 C -0.13 -3.46 3.26 29.85 0.10 -3.36 16 5 C 0.50 20.60 7.67 87.66 0.67 21.27 16 6 O -0.59 -31.24 15.56 -3.03 -0.05 -31.29 16 7 N -0.60 -25.42 2.44 -830.48 -2.03 -27.44 16 8 C 0.26 14.20 5.20 85.63 0.45 14.64 16 9 C -0.52 -30.76 9.39 25.60 0.24 -30.52 16 10 H 0.04 2.64 7.81 -2.91 -0.02 2.62 16 11 C 0.01 0.52 5.46 84.65 0.46 0.98 16 12 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 13 Si 0.96 46.72 29.54 68.60 2.03 48.75 16 14 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 17 C 0.18 5.70 5.79 85.63 0.50 6.20 16 18 C -0.04 -1.19 6.90 24.83 0.17 -1.02 16 19 C -0.21 -5.72 9.99 22.19 0.22 -5.50 16 20 C -0.22 -5.80 10.91 22.19 0.24 -5.56 16 21 C -0.06 -1.68 12.09 66.97 0.81 -0.87 16 22 O -0.19 -7.06 10.65 -2.48 -0.03 -7.09 16 23 C -0.17 -2.82 9.82 30.60 0.30 -2.51 16 24 C -0.18 -3.28 9.97 30.60 0.31 -2.98 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 0.86 7.90 -2.39 -0.02 0.84 16 27 H 0.07 1.00 5.17 -2.39 -0.01 0.99 16 28 H 0.05 1.48 8.10 -2.39 -0.02 1.47 16 29 H 0.05 1.64 7.86 -2.39 -0.02 1.62 16 30 H 0.12 2.44 7.40 -2.39 -0.02 2.42 16 31 H 0.11 2.66 3.48 -2.38 -0.01 2.65 16 32 H 0.02 1.27 7.89 -2.38 -0.02 1.26 16 33 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 34 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.15 3.00 6.44 -2.39 -0.02 2.98 16 36 H 0.09 2.86 7.89 -2.39 -0.02 2.84 16 37 H 0.17 3.48 5.73 -2.91 -0.02 3.46 16 38 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.22 4.79 8.06 -2.91 -0.02 4.76 16 40 H 0.09 1.58 8.05 -2.39 -0.02 1.56 16 41 H 0.11 1.43 8.05 -2.39 -0.02 1.42 16 42 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -79.04 353.94 6.37 -72.67 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.00 Total: 16.20 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 5.16 Total: -14.61 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -1.74 Total: -84.63 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.07 Total: -38.38 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -79.04 6.37 -72.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931269564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.412 kcal (2) G-P(sol) polarization free energy of solvation -79.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds