Wall clock time and date at job start Tue Mar 31 2020 07:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48500 * 109.46742 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47021 * 299.99522 * 3 2 1 6 6 H 1.48502 * 109.47194 * 60.00009 * 3 2 1 7 7 C 1.37877 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99814 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99685 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46629 * 299.99749 * 9 7 2 11 11 O 1.42903 * 109.47332 * 59.99922 * 9 7 2 12 12 C 1.52996 * 109.46915 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.47334 * 178.41660 * 12 9 7 14 14 C 1.47843 * 111.00087 * 173.32718 * 13 12 9 15 15 C 1.55377 * 104.83623 * 146.36942 * 14 13 12 16 16 H 1.09000 * 111.01395 * 80.93865 * 15 14 13 17 17 C 1.53002 * 111.17131 * 204.89863 * 15 14 13 18 18 C 1.50693 * 109.47506 * 287.11289 * 17 15 14 19 19 C 1.38238 * 119.99800 * 269.73125 * 18 17 15 20 20 C 1.38237 * 119.99767 * 179.76406 * 19 18 17 21 21 C 1.38234 * 120.00110 * 0.48393 * 20 19 18 22 22 C 1.38238 * 120.00053 * 359.78755 * 21 20 19 23 23 C 1.38233 * 120.00172 * 89.99713 * 18 17 15 24 24 C 1.55142 * 101.44004 * 322.95313 * 15 14 13 25 25 H 1.09001 * 110.70623 * 277.17587 * 24 15 14 26 26 O 1.42902 * 110.70565 * 154.11970 * 24 15 14 27 27 C 1.47444 * 110.99679 * 294.16881 * 13 12 9 28 28 H 0.97002 * 120.00105 * 0.02562 * 1 2 3 29 29 H 0.96699 * 113.99862 * 59.99971 * 11 9 7 30 30 H 1.09000 * 109.47155 * 58.41627 * 12 9 7 31 31 H 1.09003 * 109.47454 * 298.41727 * 12 9 7 32 32 H 1.09002 * 110.37105 * 265.18808 * 14 13 12 33 33 H 1.08998 * 110.37739 * 27.53331 * 14 13 12 34 34 H 1.09002 * 109.47108 * 47.11669 * 17 15 14 35 35 H 1.09007 * 109.46878 * 167.10753 * 17 15 14 36 36 H 1.07994 * 120.00289 * 359.97438 * 19 18 17 37 37 H 1.07997 * 120.00043 * 180.24579 * 20 19 18 38 38 H 1.07998 * 120.00184 * 179.77149 * 21 20 19 39 39 H 1.07996 * 120.00270 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.99750 * 0.02562 * 23 18 17 41 41 H 0.96703 * 114.00197 * 182.40899 * 26 24 15 42 42 H 1.09002 * 109.88795 * 117.33505 * 27 13 12 43 43 H 1.09000 * 110.02637 * 356.22312 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5566 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2452 -3.6620 0.0005 13 7 1.5111 -4.9339 0.0388 14 6 2.4301 -6.0810 -0.1203 15 6 1.8107 -7.2105 0.7484 16 1 1.0026 -7.7136 0.2173 17 6 2.8774 -8.2125 1.1946 18 6 3.2948 -9.0586 0.0195 19 6 2.6335 -10.2423 -0.2494 20 6 3.0132 -11.0160 -1.3302 21 6 4.0607 -10.6110 -2.1362 22 6 4.7257 -9.4300 -1.8640 23 6 4.3425 -8.6537 -0.7862 24 6 1.2647 -6.4051 1.9567 25 1 2.0558 -6.2145 2.6820 26 8 0.1736 -7.0934 2.5713 27 6 0.7855 -5.0869 1.3132 28 1 -0.4850 0.8401 -0.0004 29 1 0.9223 -2.5300 -1.9975 30 1 2.8904 -3.5884 0.8760 31 1 2.8531 -3.6204 -0.9033 32 1 2.4759 -6.3884 -1.1651 33 1 3.4245 -5.8241 0.2445 34 1 3.7431 -7.6740 1.5803 35 1 2.4698 -8.8529 1.9769 36 1 1.8180 -10.5610 0.3828 37 1 2.4940 -11.9388 -1.5427 38 1 4.3598 -11.2172 -2.9784 39 1 5.5443 -9.1137 -2.4934 40 1 4.8622 -7.7312 -0.5733 41 1 -0.2279 -6.6146 3.3094 42 1 -0.2873 -5.1345 1.1256 43 1 1.0095 -4.2490 1.9733 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934431790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:23 Heat of formation + Delta-G solvation = -76.477591 kcal Electronic energy + Delta-G solvation = -23225.922457 eV Core-core repulsion = 19849.450179 eV Total energy + Delta-G solvation = -3376.472278 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.83019 -38.79150 -36.26387 -35.10069 -33.68427 -32.07723 -30.99074 -30.50155 -28.35760 -27.79447 -25.75079 -24.04962 -22.70960 -21.68005 -21.40442 -20.27499 -19.58992 -17.39257 -17.01107 -16.71264 -15.68512 -15.29216 -15.22209 -14.97939 -14.63654 -14.38028 -13.83888 -13.53946 -13.36388 -13.21144 -13.15318 -12.98198 -12.67716 -12.45231 -12.28673 -11.98246 -11.58656 -11.22997 -11.13812 -11.05912 -10.95848 -10.85823 -10.65844 -10.54259 -10.25498 -10.07553 -9.94049 -9.01543 -8.97572 -8.76061 -8.57689 -8.08321 -7.65435 -6.00949 -4.19715 1.25846 1.30688 3.25520 3.33884 3.36806 3.67212 4.14772 4.33662 4.45763 4.57454 4.74172 4.84679 4.89282 4.95429 5.03275 5.14306 5.26714 5.29281 5.40975 5.43392 5.54535 5.57982 5.74005 5.77106 5.87283 5.95157 6.01114 6.06429 6.08591 6.24066 6.32781 6.37179 6.41149 6.42742 6.55180 6.56940 6.79628 6.91409 7.44410 7.59134 7.67511 7.75445 7.86338 8.19738 8.84610 9.46669 9.63229 11.03094 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022364 B = 0.003391 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.696539 B = 8254.389111 C = 8975.752929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.079 3.921 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.575 4.575 8 H 0.055 0.945 9 C 0.237 3.763 10 H 0.053 0.947 11 O -0.554 6.554 12 C 0.025 3.975 13 N -0.512 5.512 14 C 0.048 3.952 15 C -0.080 4.080 16 H 0.093 0.907 17 C -0.071 4.071 18 C -0.074 4.074 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.128 4.128 22 C -0.119 4.119 23 C -0.115 4.115 24 C 0.084 3.916 25 H 0.060 0.940 26 O -0.561 6.561 27 C 0.017 3.983 28 H 0.260 0.740 29 H 0.343 0.657 30 H 0.027 0.973 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.378 0.622 42 H 0.083 0.917 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.088 -19.354 1.585 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.614 4.614 8 H 0.073 0.927 9 C 0.179 3.821 10 H 0.071 0.929 11 O -0.356 6.356 12 C -0.103 4.103 13 N -0.237 5.237 14 C -0.079 4.079 15 C -0.099 4.099 16 H 0.111 0.889 17 C -0.109 4.109 18 C -0.074 4.074 19 C -0.134 4.134 20 C -0.138 4.138 21 C -0.146 4.146 22 C -0.137 4.137 23 C -0.133 4.133 24 C 0.024 3.976 25 H 0.078 0.922 26 O -0.366 6.366 27 C -0.112 4.112 28 H 0.070 0.930 29 H 0.186 0.814 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.225 0.775 42 H 0.101 0.899 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.227 -19.714 1.186 20.708 hybrid contribution 1.481 1.548 0.684 2.249 sum 7.708 -18.166 1.870 19.822 Atomic orbital electron populations 1.70096 1.05906 1.26287 1.47031 1.25031 0.94685 0.99087 0.93866 0.86629 0.80188 0.83908 0.77713 1.19753 1.20821 1.20916 1.21697 0.93153 0.91643 1.54859 0.92714 1.19331 0.87732 0.88494 0.86531 0.92935 1.86564 1.37730 1.96293 1.14976 1.23280 0.97224 0.90202 0.99565 1.63587 1.26072 1.01979 1.32050 1.23182 0.94503 0.90160 1.00095 1.22335 0.97471 0.95091 0.95008 0.88907 1.20596 0.98403 0.96642 0.95229 1.19876 0.95572 0.95041 0.96942 1.21075 0.99766 0.94682 0.97916 1.21126 0.97427 0.99813 0.95436 1.21121 0.96703 0.97043 0.99764 1.21146 0.99966 0.95027 0.97535 1.21095 0.97209 0.99653 0.95309 1.23191 0.88350 0.92148 0.93874 0.92221 1.86473 1.49775 1.48553 1.51823 1.23510 1.00791 0.95968 0.90902 0.93041 0.81437 0.95490 0.91778 0.90323 0.94031 0.91033 0.90427 0.86110 0.86279 0.86376 0.86189 0.86099 0.77477 0.89863 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.43 12.84 55.43 0.71 -24.72 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.58 -15.75 8.76 -34.44 -0.30 -16.05 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.24 6.02 2.75 -27.88 -0.08 5.94 16 10 H 0.05 1.46 6.83 -51.93 -0.35 1.11 16 11 O -0.55 -14.69 12.62 -35.23 -0.44 -15.14 16 12 C 0.03 0.52 4.12 -3.83 -0.02 0.50 16 13 N -0.51 -9.44 5.08 -230.94 -1.17 -10.61 16 14 C 0.05 0.72 5.57 -2.04 -0.01 0.71 16 15 C -0.08 -1.07 2.73 -88.22 -0.24 -1.31 16 16 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 17 C -0.07 -0.78 4.88 -27.89 -0.14 -0.92 16 18 C -0.07 -0.83 4.98 -104.63 -0.52 -1.35 16 19 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 20 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 21 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 22 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.11 -1.24 9.25 -39.58 -0.37 -1.60 16 24 C 0.08 1.15 3.78 -24.91 -0.09 1.06 16 25 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 26 O -0.56 -7.25 13.39 -35.23 -0.47 -7.73 16 27 C 0.02 0.29 5.92 -2.84 -0.02 0.27 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.34 8.18 9.04 45.56 0.41 8.59 16 30 H 0.03 0.54 8.08 -51.93 -0.42 0.13 16 31 H 0.06 1.30 8.12 -51.93 -0.42 0.88 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.04 0.59 7.59 -51.93 -0.39 0.19 16 34 H 0.07 0.74 7.92 -51.93 -0.41 0.33 16 35 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.38 3.43 9.12 45.56 0.42 3.84 16 42 H 0.08 1.53 8.06 -51.93 -0.42 1.11 16 43 H 0.06 1.09 6.73 -51.93 -0.35 0.74 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -32.12 353.00 -9.81 -41.94 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -5.28 Total: 11.88 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -3.45 Total: -17.00 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.46 Total: -35.33 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.92 Total: -22.86 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.12 -9.81 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934431790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.539 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds