Wall clock time and date at job start Tue Mar 31 2020 07:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48500 * 109.46742 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47021 * 299.99522 * 3 2 1 6 6 H 1.48502 * 109.47194 * 60.00009 * 3 2 1 7 7 C 1.37877 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99814 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99685 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46629 * 299.99749 * 9 7 2 11 11 O 1.42903 * 109.47332 * 59.99922 * 9 7 2 12 12 C 1.52996 * 109.46915 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.47334 * 178.41660 * 12 9 7 14 14 C 1.47843 * 111.00087 * 173.32718 * 13 12 9 15 15 C 1.55377 * 104.83623 * 146.36942 * 14 13 12 16 16 H 1.09000 * 111.01395 * 80.93865 * 15 14 13 17 17 C 1.53002 * 111.17131 * 204.89863 * 15 14 13 18 18 C 1.50693 * 109.47506 * 287.11289 * 17 15 14 19 19 C 1.38238 * 119.99800 * 269.73125 * 18 17 15 20 20 C 1.38237 * 119.99767 * 179.76406 * 19 18 17 21 21 C 1.38234 * 120.00110 * 0.48393 * 20 19 18 22 22 C 1.38238 * 120.00053 * 359.78755 * 21 20 19 23 23 C 1.38233 * 120.00172 * 89.99713 * 18 17 15 24 24 C 1.55142 * 101.44004 * 322.95313 * 15 14 13 25 25 H 1.09001 * 110.70623 * 277.17587 * 24 15 14 26 26 O 1.42902 * 110.70565 * 154.11970 * 24 15 14 27 27 C 1.47444 * 110.99679 * 294.16881 * 13 12 9 28 28 H 0.97002 * 120.00105 * 0.02562 * 1 2 3 29 29 H 0.96699 * 113.99862 * 59.99971 * 11 9 7 30 30 H 1.09000 * 109.47155 * 58.41627 * 12 9 7 31 31 H 1.09003 * 109.47454 * 298.41727 * 12 9 7 32 32 H 1.09002 * 110.37105 * 265.18808 * 14 13 12 33 33 H 1.08998 * 110.37739 * 27.53331 * 14 13 12 34 34 H 1.09002 * 109.47108 * 47.11669 * 17 15 14 35 35 H 1.09007 * 109.46878 * 167.10753 * 17 15 14 36 36 H 1.07994 * 120.00289 * 359.97438 * 19 18 17 37 37 H 1.07997 * 120.00043 * 180.24579 * 20 19 18 38 38 H 1.07998 * 120.00184 * 179.77149 * 21 20 19 39 39 H 1.07996 * 120.00270 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.99750 * 0.02562 * 23 18 17 41 41 H 0.96703 * 114.00197 * 182.40899 * 26 24 15 42 42 H 1.09002 * 109.88795 * 117.33505 * 27 13 12 43 43 H 1.09000 * 110.02637 * 356.22312 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5566 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2452 -3.6620 0.0005 13 7 1.5111 -4.9339 0.0388 14 6 2.4301 -6.0810 -0.1203 15 6 1.8107 -7.2105 0.7484 16 1 1.0026 -7.7136 0.2173 17 6 2.8774 -8.2125 1.1946 18 6 3.2948 -9.0586 0.0195 19 6 2.6335 -10.2423 -0.2494 20 6 3.0132 -11.0160 -1.3302 21 6 4.0607 -10.6110 -2.1362 22 6 4.7257 -9.4300 -1.8640 23 6 4.3425 -8.6537 -0.7862 24 6 1.2647 -6.4051 1.9567 25 1 2.0558 -6.2145 2.6820 26 8 0.1736 -7.0934 2.5713 27 6 0.7855 -5.0869 1.3132 28 1 -0.4850 0.8401 -0.0004 29 1 0.9223 -2.5300 -1.9975 30 1 2.8904 -3.5884 0.8760 31 1 2.8531 -3.6204 -0.9033 32 1 2.4759 -6.3884 -1.1651 33 1 3.4245 -5.8241 0.2445 34 1 3.7431 -7.6740 1.5803 35 1 2.4698 -8.8529 1.9769 36 1 1.8180 -10.5610 0.3828 37 1 2.4940 -11.9388 -1.5427 38 1 4.3598 -11.2172 -2.9784 39 1 5.5443 -9.1137 -2.4934 40 1 4.8622 -7.7312 -0.5733 41 1 -0.2279 -6.6146 3.3094 42 1 -0.2873 -5.1345 1.1256 43 1 1.0095 -4.2490 1.9733 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934431790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:23 Heat of formation + Delta-G solvation = -100.774461 kcal Electronic energy + Delta-G solvation = -23226.976048 eV Core-core repulsion = 19849.450179 eV Total energy + Delta-G solvation = -3377.525869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.88239 -39.77414 -37.88755 -36.50605 -34.80764 -34.21932 -31.76588 -31.70322 -29.75645 -29.28215 -27.16940 -25.53784 -23.53526 -23.20688 -22.33859 -21.50959 -20.98181 -19.06244 -18.43688 -17.50491 -16.90927 -16.68460 -16.55483 -16.26274 -16.01611 -15.99997 -15.29773 -14.85874 -14.49774 -14.43423 -14.26683 -14.15576 -13.79894 -13.67293 -13.45789 -13.36980 -13.05750 -12.85868 -12.75544 -12.51757 -12.28432 -12.03107 -11.99394 -11.93472 -11.67982 -11.33925 -11.10563 -10.99679 -10.71153 -10.09421 -9.76296 -9.54148 -9.11991 -8.13873 -6.40402 0.49723 0.55663 1.39339 1.40735 1.52812 2.37728 2.88465 3.00048 3.12467 3.26619 3.48615 3.67269 3.94623 4.01814 4.10736 4.21792 4.25874 4.28862 4.35837 4.38160 4.43780 4.47934 4.52923 4.67835 4.68927 4.71143 4.84257 4.90420 4.95508 5.00442 5.05545 5.19689 5.24009 5.29188 5.58941 5.63280 5.68017 5.74049 5.78370 5.97998 6.13375 6.18586 6.20668 6.73600 6.80016 7.34227 7.61307 8.90798 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022364 B = 0.003391 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.696539 B = 8254.389111 C = 8975.752929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.025 3.975 3 Si 0.961 3.039 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.588 4.588 8 H 0.060 0.940 9 C 0.237 3.763 10 H 0.019 0.981 11 O -0.573 6.573 12 C 0.045 3.955 13 N -0.532 5.532 14 C 0.053 3.947 15 C -0.071 4.071 16 H 0.076 0.924 17 C -0.061 4.061 18 C -0.089 4.089 19 C -0.130 4.130 20 C -0.128 4.128 21 C -0.134 4.134 22 C -0.128 4.128 23 C -0.127 4.127 24 C 0.097 3.903 25 H 0.079 0.921 26 O -0.569 6.569 27 C 0.017 3.983 28 H 0.261 0.739 29 H 0.352 0.648 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.126 0.874 41 H 0.395 0.605 42 H 0.061 0.939 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.899 -20.248 1.596 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.786 3.214 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.626 4.626 8 H 0.079 0.921 9 C 0.179 3.821 10 H 0.037 0.963 11 O -0.376 6.376 12 C -0.083 4.083 13 N -0.257 5.257 14 C -0.074 4.074 15 C -0.090 4.090 16 H 0.094 0.906 17 C -0.098 4.098 18 C -0.089 4.089 19 C -0.148 4.148 20 C -0.145 4.145 21 C -0.152 4.152 22 C -0.146 4.146 23 C -0.145 4.145 24 C 0.037 3.963 25 H 0.097 0.903 26 O -0.376 6.376 27 C -0.112 4.112 28 H 0.070 0.930 29 H 0.196 0.804 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.145 0.855 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.144 0.856 41 H 0.245 0.755 42 H 0.079 0.921 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.049 -20.624 1.208 22.172 hybrid contribution 0.858 1.765 0.649 2.067 sum 8.907 -18.859 1.857 20.939 Atomic orbital electron populations 1.70239 1.07731 1.27287 1.48438 1.25923 0.95478 1.02996 0.93380 0.85486 0.79171 0.79065 0.77687 1.18572 1.20539 1.20491 1.22084 0.93569 0.92730 1.54224 0.92137 1.19217 0.87765 0.90162 0.84982 0.96305 1.86509 1.38806 1.96469 1.15794 1.22859 0.95800 0.89710 0.99964 1.63436 1.27017 1.02162 1.33072 1.23183 0.94518 0.89219 1.00526 1.22230 0.97613 0.94851 0.94274 0.90555 1.20500 0.97831 0.96090 0.95403 1.19948 0.96155 0.95475 0.97280 1.21280 1.00089 0.94886 0.98524 1.21426 0.97576 1.00443 0.95093 1.21451 0.96366 0.97108 1.00232 1.21434 1.00487 0.95163 0.97546 1.21266 0.97408 1.00147 0.95711 1.23055 0.88817 0.90154 0.94259 0.90300 1.86442 1.49755 1.48733 1.52643 1.23456 0.99531 0.97680 0.90520 0.93014 0.80367 0.95037 0.91231 0.90498 0.92627 0.90016 0.89807 0.85532 0.84409 0.84294 0.84582 0.85594 0.75542 0.92070 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.33 12.84 21.45 0.28 -54.05 16 2 C 0.02 1.38 5.40 84.65 0.46 1.84 16 3 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.59 -32.31 8.76 25.60 0.22 -32.08 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 9 C 0.24 12.27 2.75 29.85 0.08 12.35 16 10 H 0.02 1.11 6.83 -2.39 -0.02 1.09 16 11 O -0.57 -31.11 12.62 -148.98 -1.88 -32.99 16 12 C 0.04 1.84 4.12 86.30 0.36 2.20 16 13 N -0.53 -19.60 5.08 -884.56 -4.50 -24.10 16 14 C 0.05 1.51 5.57 86.94 0.48 2.00 16 15 C -0.07 -1.79 2.73 -9.24 -0.03 -1.82 16 16 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 17 C -0.06 -1.22 4.88 29.85 0.15 -1.08 16 18 C -0.09 -1.84 4.98 -19.87 -0.10 -1.94 16 19 C -0.13 -2.58 9.70 22.27 0.22 -2.36 16 20 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 21 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 22 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 23 C -0.13 -2.54 9.25 22.27 0.21 -2.34 16 24 C 0.10 2.54 3.78 31.77 0.12 2.66 16 25 H 0.08 1.81 8.04 -2.39 -0.02 1.79 16 26 O -0.57 -13.99 13.39 -148.98 -1.99 -15.99 16 27 C 0.02 0.58 5.92 86.64 0.51 1.09 16 28 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.35 17.11 9.04 -74.06 -0.67 16.44 16 30 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 31 H 0.07 2.76 8.12 -2.39 -0.02 2.74 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.06 1.46 7.59 -2.39 -0.02 1.44 16 34 H 0.08 1.48 7.92 -2.39 -0.02 1.47 16 35 H 0.08 1.60 8.08 -2.38 -0.02 1.58 16 36 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 37 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 40 H 0.13 2.29 8.06 -2.91 -0.02 2.26 16 41 H 0.39 6.69 9.12 -74.06 -0.68 6.01 16 42 H 0.06 2.35 8.06 -2.39 -0.02 2.33 16 43 H 0.05 1.73 6.73 -2.39 -0.02 1.71 16 Total: -1.00 -68.88 353.00 -3.06 -71.94 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -0.34 Total: 35.59 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 3.35 Total: -25.65 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -4.22 Total: -78.16 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -3.88 Total: -48.98 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -68.88 -3.06 -71.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934431790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.837 kcal (2) G-P(sol) polarization free energy of solvation -68.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds