Wall clock time and date at job start Tue Mar 31 2020 06:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46902 * 110.99790 * 58.95192 * 12 2 1 14 14 C 1.46896 * 111.00342 * 295.00322 * 12 2 1 15 15 C 1.50695 * 109.47619 * 189.99958 * 14 12 2 16 16 N 1.31499 * 118.68498 * 269.72977 * 15 14 12 17 17 C 1.33135 * 120.63123 * 179.71627 * 16 15 14 18 18 C 1.40954 * 118.81788 * 0.54291 * 17 16 15 19 19 C 1.41227 * 106.99994 * 179.73418 * 18 17 16 20 20 N 1.30225 * 108.47273 * 359.97438 * 19 18 17 21 21 N 1.36331 * 134.64181 * 180.17952 * 17 16 15 22 22 C 1.46504 * 125.86549 * 0.33530 * 21 17 16 23 23 C 1.40576 * 118.28273 * 359.73018 * 18 17 16 24 24 O 1.35377 * 120.78915 * 180.02562 * 23 18 17 25 25 N 1.32155 * 118.69130 * 89.99667 * 15 14 12 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.46808 * 60.00632 * 13 12 2 31 31 H 1.09004 * 109.47176 * 180.02562 * 13 12 2 32 32 H 1.08994 * 109.47263 * 300.00333 * 13 12 2 33 33 H 1.09006 * 109.46837 * 310.00141 * 14 12 2 34 34 H 1.09003 * 109.47200 * 69.99229 * 14 12 2 35 35 H 1.08006 * 125.76511 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.46337 * 269.97057 * 22 21 17 37 37 H 1.08991 * 109.47109 * 29.96859 * 22 21 17 38 38 H 1.09000 * 109.46918 * 149.97737 * 22 21 17 39 39 H 0.96706 * 113.99520 * 269.98144 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0197 -0.6925 1.1993 13 6 1.5283 -2.0761 1.2458 14 6 1.6488 0.0390 2.4180 15 6 2.3680 -0.5572 3.6004 16 7 1.7871 -1.5303 4.2675 17 6 2.3901 -2.0889 5.3149 18 6 3.6578 -1.6110 5.7036 19 6 4.0563 -2.3655 6.8290 20 7 3.1173 -3.2252 7.1028 21 7 2.0671 -3.0860 6.1867 22 6 0.8334 -3.8759 6.1685 23 6 4.2322 -0.5652 4.9602 24 8 5.4477 -0.0678 5.2885 25 7 3.5549 -0.0778 3.9288 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 0.7093 1.1619 -3.4844 30 1 1.8763 -2.6150 0.3646 31 1 1.9054 -2.5656 2.1438 32 1 0.4386 -2.0742 1.2638 33 1 1.9297 1.0869 2.3125 34 1 0.5723 -0.0346 2.5725 35 1 4.9828 -2.2486 7.3715 36 1 0.0789 -3.3853 6.7835 37 1 0.4698 -3.9583 5.1443 38 1 1.0336 -4.8716 6.5643 39 1 5.4153 0.6672 5.9162 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116344749.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:38 Heat of formation + Delta-G solvation = 100.682302 kcal Electronic energy + Delta-G solvation = -23244.342539 eV Core-core repulsion = 19804.304899 eV Total energy + Delta-G solvation = -3440.037641 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.19057 -39.44113 -37.99845 -36.77351 -33.83738 -32.84390 -32.50943 -30.82624 -28.66938 -27.35815 -27.21067 -25.16972 -24.44805 -23.75763 -22.06563 -21.18666 -19.35832 -18.68460 -18.52245 -17.30660 -16.45342 -16.14162 -15.74029 -15.30250 -14.85397 -14.45401 -14.38736 -14.03754 -13.60395 -13.43452 -12.91609 -12.83395 -12.52144 -12.45086 -12.19262 -11.67167 -11.41936 -11.15200 -11.04706 -10.94422 -10.80542 -10.70553 -10.54036 -10.47467 -10.00751 -9.86612 -9.31198 -9.20637 -8.87742 -8.81146 -8.37374 -7.20675 -5.99524 -4.02778 0.38113 1.17659 1.87217 2.18662 3.21792 3.32981 3.39623 3.44294 3.62531 3.86415 3.96695 4.44290 4.48632 4.62549 4.80317 4.99886 5.10521 5.16294 5.22611 5.28490 5.33466 5.79802 5.91817 6.01113 6.18909 6.26085 6.41897 6.46852 6.68985 6.83192 6.91222 7.00185 7.09973 7.11535 7.28504 7.44459 7.71327 7.82977 8.08149 8.19931 8.36082 8.56041 9.02209 9.61870 11.07726 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023381 B = 0.003870 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.264031 B = 7233.967402 C = 7654.707765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.213 3.787 3 H 0.044 0.956 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.525 5.525 13 C 0.036 3.964 14 C 0.117 3.883 15 C 0.419 3.581 16 N -0.535 5.535 17 C 0.357 3.643 18 C -0.311 4.311 19 C 0.109 3.891 20 N -0.249 5.249 21 N -0.385 5.385 22 C 0.111 3.889 23 C 0.448 3.552 24 O -0.470 6.470 25 N -0.540 5.540 26 H 0.009 0.991 27 H 0.032 0.968 28 H 0.090 0.910 29 H 0.260 0.740 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.024 0.976 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.201 0.799 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.041 -4.142 19.711 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.108 3.892 3 H 0.062 0.938 4 C -0.537 4.537 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.250 5.250 13 C -0.113 4.113 14 C -0.014 4.014 15 C 0.148 3.852 16 N -0.259 5.259 17 C 0.109 3.891 18 C -0.325 4.325 19 C -0.089 4.089 20 N -0.062 5.062 21 N -0.175 5.175 22 C -0.030 4.030 23 C 0.250 3.750 24 O -0.278 6.278 25 N -0.267 5.267 26 H 0.028 0.972 27 H 0.051 0.949 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.218 0.782 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 1.660 -5.186 19.244 20.000 hybrid contribution -0.010 0.108 -0.308 0.327 sum 1.650 -5.078 18.936 19.674 Atomic orbital electron populations 1.22428 1.00618 0.99565 1.00690 1.19362 0.89869 0.94749 0.85255 0.93777 1.21082 1.30598 1.12494 0.89517 0.91953 1.24897 0.95230 0.95112 0.98926 1.69875 1.37086 1.22967 1.23422 0.86519 0.79252 0.79263 0.82513 1.20865 1.21271 1.19862 1.62373 1.59592 1.02177 1.00819 1.22261 0.97535 0.90714 1.00785 1.20900 0.95994 0.98376 0.86084 1.23176 0.85397 0.84650 0.91945 1.67522 1.38071 1.12955 1.07359 1.19100 0.90063 0.89810 0.90109 1.20333 0.99614 1.08037 1.04556 1.23744 0.98544 0.92006 0.94572 1.76932 0.96233 1.21495 1.11573 1.48257 1.17178 1.29233 1.22846 1.21885 0.81307 0.95259 1.04533 1.19003 0.83082 0.86719 0.86216 1.84655 1.22060 1.54150 1.66914 1.67983 1.08879 1.33296 1.16527 0.97219 0.94917 0.89168 0.92993 0.90906 0.94112 0.95790 0.88244 0.92198 0.78241 0.90821 0.88780 0.89186 0.73017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.28 37.16 0.31 -3.80 16 2 C 0.21 5.31 2.34 -68.87 -0.16 5.15 16 3 H 0.04 1.19 8.03 -51.93 -0.42 0.78 16 4 C -0.50 -13.61 7.94 -34.44 -0.27 -13.88 16 5 H 0.06 1.73 6.75 -52.49 -0.35 1.37 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.18 11.32 55.43 0.63 -24.55 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.52 -11.56 4.73 -237.73 -1.13 -12.69 16 13 C 0.04 0.74 8.66 60.07 0.52 1.26 16 14 C 0.12 2.19 4.81 -4.98 -0.02 2.17 16 15 C 0.42 7.43 6.41 -157.14 -1.01 6.42 16 16 N -0.54 -9.00 9.15 -10.10 -0.09 -9.09 16 17 C 0.36 5.41 8.04 -156.24 -1.26 4.16 16 18 C -0.31 -4.23 6.19 -106.85 -0.66 -4.89 16 19 C 0.11 1.17 12.05 -17.10 -0.21 0.96 16 20 N -0.25 -3.04 12.45 30.81 0.38 -2.65 16 21 N -0.38 -4.98 4.05 -67.24 -0.27 -5.26 16 22 C 0.11 1.02 11.47 59.85 0.69 1.70 16 23 C 0.45 6.35 7.90 -16.31 -0.13 6.22 16 24 O -0.47 -5.03 13.58 -17.82 -0.24 -5.28 16 25 N -0.54 -9.29 10.33 -10.53 -0.11 -9.40 16 26 H 0.01 0.19 6.75 -51.93 -0.35 -0.16 16 27 H 0.03 0.75 6.39 -51.93 -0.33 0.42 16 28 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.07 1.60 6.53 -51.93 -0.34 1.26 16 31 H 0.04 0.80 6.33 -51.93 -0.33 0.47 16 32 H 0.02 0.48 6.28 -51.93 -0.33 0.16 16 33 H 0.10 1.83 8.00 -51.93 -0.42 1.41 16 34 H 0.06 1.09 6.94 -51.93 -0.36 0.73 16 35 H 0.20 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.41 1.95 9.06 45.56 0.41 2.36 16 LS Contribution 323.79 15.07 4.88 4.88 Total: -1.00 -33.05 323.79 -7.22 -40.27 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -3.95 Total: 0.38 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -2.30 Total: 7.01 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.59 Total: -63.64 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.24 Total: -5.28 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.05 -7.22 -40.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116344749.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.955 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds