Wall clock time and date at job start Tue Mar 31 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46902 * 110.99790 * 58.95192 * 12 2 1 14 14 C 1.46896 * 111.00342 * 295.00322 * 12 2 1 15 15 C 1.50695 * 109.47619 * 189.99958 * 14 12 2 16 16 N 1.31499 * 118.68498 * 269.72977 * 15 14 12 17 17 C 1.33135 * 120.63123 * 179.71627 * 16 15 14 18 18 C 1.40954 * 118.81788 * 0.54291 * 17 16 15 19 19 C 1.41227 * 106.99994 * 179.73418 * 18 17 16 20 20 N 1.30225 * 108.47273 * 359.97438 * 19 18 17 21 21 N 1.36331 * 134.64181 * 180.17952 * 17 16 15 22 22 C 1.46504 * 125.86549 * 0.33530 * 21 17 16 23 23 C 1.40576 * 118.28273 * 359.73018 * 18 17 16 24 24 O 1.35377 * 120.78915 * 180.02562 * 23 18 17 25 25 N 1.32155 * 118.69130 * 89.99667 * 15 14 12 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.46808 * 60.00632 * 13 12 2 31 31 H 1.09004 * 109.47176 * 180.02562 * 13 12 2 32 32 H 1.08994 * 109.47263 * 300.00333 * 13 12 2 33 33 H 1.09006 * 109.46837 * 310.00141 * 14 12 2 34 34 H 1.09003 * 109.47200 * 69.99229 * 14 12 2 35 35 H 1.08006 * 125.76511 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.46337 * 269.97057 * 22 21 17 37 37 H 1.08991 * 109.47109 * 29.96859 * 22 21 17 38 38 H 1.09000 * 109.46918 * 149.97737 * 22 21 17 39 39 H 0.96706 * 113.99520 * 269.98144 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0197 -0.6925 1.1993 13 6 1.5283 -2.0761 1.2458 14 6 1.6488 0.0390 2.4180 15 6 2.3680 -0.5572 3.6004 16 7 1.7871 -1.5303 4.2675 17 6 2.3901 -2.0889 5.3149 18 6 3.6578 -1.6110 5.7036 19 6 4.0563 -2.3655 6.8290 20 7 3.1173 -3.2252 7.1028 21 7 2.0671 -3.0860 6.1867 22 6 0.8334 -3.8759 6.1685 23 6 4.2322 -0.5652 4.9602 24 8 5.4477 -0.0678 5.2885 25 7 3.5549 -0.0778 3.9288 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 0.7093 1.1619 -3.4844 30 1 1.8763 -2.6150 0.3646 31 1 1.9054 -2.5656 2.1438 32 1 0.4386 -2.0742 1.2638 33 1 1.9297 1.0869 2.3125 34 1 0.5723 -0.0346 2.5725 35 1 4.9828 -2.2486 7.3715 36 1 0.0789 -3.3853 6.7835 37 1 0.4698 -3.9583 5.1443 38 1 1.0336 -4.8716 6.5643 39 1 5.4153 0.6672 5.9162 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116344749.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:37 Heat of formation + Delta-G solvation = 73.931768 kcal Electronic energy + Delta-G solvation = -23245.502529 eV Core-core repulsion = 19804.304899 eV Total energy + Delta-G solvation = -3441.197631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.23087 -40.54012 -39.21360 -38.24805 -34.82584 -34.74265 -33.58922 -32.18435 -30.38239 -28.82026 -28.09834 -27.20418 -26.00183 -24.85110 -23.40907 -22.17204 -21.11297 -19.75075 -19.57245 -18.37586 -18.13954 -17.53303 -17.08105 -16.63258 -16.20094 -15.85319 -15.59990 -15.26116 -15.21778 -14.71321 -14.32204 -14.18117 -13.62821 -13.55517 -13.46370 -13.15881 -12.93984 -12.81275 -12.63656 -12.59804 -12.47918 -12.29059 -12.05820 -11.97568 -11.86020 -11.58391 -10.90873 -10.47598 -10.46756 -10.27335 -9.82607 -8.94031 -8.08542 -6.18593 -0.69456 0.05881 0.94883 1.27384 1.43757 1.45259 1.55624 2.23101 2.38452 2.49671 2.74927 2.99091 3.21035 3.45885 3.52577 3.65026 3.88111 4.12748 4.34394 4.38060 4.43000 4.49937 4.59578 4.61969 4.74553 4.82543 4.91929 4.97895 5.12905 5.14302 5.19703 5.41114 5.54626 5.72120 5.79843 5.91531 6.16409 6.23510 6.43694 6.54154 6.65047 6.92080 7.01556 7.49744 8.97685 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023381 B = 0.003870 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.264031 B = 7233.967402 C = 7654.707765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.219 3.781 3 H 0.016 0.984 4 C -0.515 4.515 5 H 0.052 0.948 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.274 1.274 12 N -0.538 5.538 13 C 0.049 3.951 14 C 0.123 3.877 15 C 0.406 3.594 16 N -0.546 5.546 17 C 0.331 3.669 18 C -0.313 4.313 19 C 0.125 3.875 20 N -0.258 5.258 21 N -0.386 5.386 22 C 0.103 3.897 23 C 0.456 3.544 24 O -0.467 6.467 25 N -0.571 5.571 26 H 0.031 0.969 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.262 0.738 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.027 0.973 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.245 0.755 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 -5.167 21.410 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.112 3.888 3 H 0.034 0.966 4 C -0.554 4.554 5 H 0.071 0.929 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.262 5.262 13 C -0.099 4.099 14 C -0.007 4.007 15 C 0.135 3.865 16 N -0.271 5.271 17 C 0.084 3.916 18 C -0.328 4.328 19 C -0.072 4.072 20 N -0.071 5.071 21 N -0.176 5.176 22 C -0.037 4.037 23 C 0.259 3.741 24 O -0.279 6.279 25 N -0.300 5.300 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.261 0.739 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 2.515 -6.219 21.004 22.049 hybrid contribution -0.199 0.420 -0.667 0.814 sum 2.315 -5.799 20.337 21.274 Atomic orbital electron populations 1.22211 0.99714 0.99415 1.00471 1.19107 0.90417 0.93212 0.86054 0.96618 1.21315 1.30728 1.12440 0.90896 0.92941 1.25603 0.95385 0.95772 1.01537 1.69990 1.37739 1.23920 1.24045 0.85579 0.78672 0.78310 0.79174 1.20125 1.20800 1.19863 1.62193 1.60096 1.02739 1.01211 1.22102 0.97527 0.89940 1.00328 1.20769 0.96516 0.98004 0.85410 1.22690 0.85994 0.85668 0.92167 1.67391 1.38471 1.13019 1.08201 1.19376 0.91100 0.90783 0.90370 1.20551 0.99109 1.07898 1.05217 1.24429 0.99383 0.90139 0.93273 1.76957 0.96447 1.22096 1.11582 1.48641 1.18068 1.28670 1.22225 1.22148 0.80586 0.96132 1.04795 1.19058 0.83293 0.86501 0.85278 1.84615 1.20088 1.55401 1.67778 1.67919 1.09273 1.34450 1.18344 0.95018 0.94875 0.91668 0.92890 0.92625 0.93125 0.95502 0.88549 0.91755 0.73894 0.89323 0.89261 0.87121 0.69936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.59 8.28 71.98 0.60 -7.00 16 2 C 0.22 11.15 2.34 44.17 0.10 11.26 16 3 H 0.02 0.89 8.03 -2.39 -0.02 0.87 16 4 C -0.52 -28.65 7.94 25.60 0.20 -28.45 16 5 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 6 C 0.02 0.88 5.30 84.65 0.45 1.32 16 7 N -0.92 -52.34 11.32 21.45 0.24 -52.09 16 8 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 N -0.54 -24.08 4.73 -906.06 -4.29 -28.37 16 13 C 0.05 2.06 8.66 127.69 1.11 3.17 16 14 C 0.12 4.68 4.81 85.56 0.41 5.09 16 15 C 0.41 14.40 6.41 138.73 0.89 15.29 16 16 N -0.55 -18.13 9.15 -185.87 -1.70 -19.83 16 17 C 0.33 9.64 8.04 134.18 1.08 10.72 16 18 C -0.31 -7.86 6.19 -21.31 -0.13 -7.99 16 19 C 0.12 2.26 12.05 85.67 1.03 3.29 16 20 N -0.26 -5.56 12.45 -56.43 -0.70 -6.26 16 21 N -0.39 -9.28 4.05 -366.63 -1.48 -10.76 16 22 C 0.10 1.71 11.47 127.77 1.47 3.17 16 23 C 0.46 12.17 7.90 85.14 0.67 12.84 16 24 O -0.47 -8.81 13.58 -86.68 -1.18 -9.99 16 25 N -0.57 -19.42 10.33 -300.04 -3.10 -22.52 16 26 H 0.03 1.32 6.75 -2.39 -0.02 1.31 16 27 H 0.03 1.53 6.39 -2.39 -0.02 1.52 16 28 H 0.06 3.46 6.07 -2.38 -0.01 3.45 16 29 H 0.26 14.23 8.31 -92.71 -0.77 13.45 16 30 H 0.05 2.47 6.53 -2.39 -0.02 2.46 16 31 H 0.05 1.99 6.33 -2.38 -0.02 1.98 16 32 H 0.03 1.08 6.28 -2.39 -0.02 1.07 16 33 H 0.10 3.65 8.00 -2.38 -0.02 3.63 16 34 H 0.06 2.35 6.94 -2.39 -0.02 2.33 16 35 H 0.25 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.44 2.86 9.06 -74.05 -0.67 2.19 16 Total: -1.00 -71.43 323.79 -1.87 -73.30 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.43 Total: 7.67 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 7.88 Total: 22.71 kcal Atomic # 7 Polarization: -128.80 SS G_CDS: -11.03 Total: -139.84 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.18 Total: -9.99 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -71.43 -1.87 -73.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116344749.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.237 kcal (2) G-P(sol) polarization free energy of solvation -71.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds