Wall clock time and date at job start Tue Mar 31 2020 06:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46896 * 111.00084 * 306.05107 * 12 2 1 14 14 C 1.46904 * 110.99915 * 70.00061 * 12 2 1 15 15 C 1.50699 * 109.47221 * 170.00202 * 14 12 2 16 16 N 1.31490 * 118.68853 * 269.73181 * 15 14 12 17 17 C 1.33134 * 120.63525 * 179.71899 * 16 15 14 18 18 C 1.40953 * 118.81709 * 0.54314 * 17 16 15 19 19 C 1.41222 * 107.00665 * 179.73510 * 18 17 16 20 20 N 1.30235 * 108.46754 * 359.97438 * 19 18 17 21 21 N 1.36330 * 134.64488 * 180.17886 * 17 16 15 22 22 C 1.46495 * 125.86760 * 0.33065 * 21 17 16 23 23 C 1.40584 * 118.28524 * 359.72686 * 18 17 16 24 24 O 1.35368 * 120.79379 * 180.02562 * 23 18 17 25 25 N 1.32165 * 118.68872 * 89.99988 * 15 14 12 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47503 * 59.99333 * 13 12 2 31 31 H 1.09007 * 109.47634 * 179.97438 * 13 12 2 32 32 H 1.09003 * 109.46925 * 299.99540 * 13 12 2 33 33 H 1.08999 * 109.46953 * 290.00368 * 14 12 2 34 34 H 1.08998 * 109.47126 * 50.00315 * 14 12 2 35 35 H 1.07999 * 125.77252 * 180.02562 * 19 18 17 36 36 H 1.08997 * 109.47210 * 270.02398 * 22 21 17 37 37 H 1.09007 * 109.47063 * 30.02235 * 22 21 17 38 38 H 1.09003 * 109.46976 * 150.02101 * 22 21 17 39 39 H 0.96702 * 113.99398 * 269.97782 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 7 2.0197 -0.6925 -1.1993 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4775 -0.5163 -3.5793 16 7 3.7000 -0.1126 -3.8470 17 6 4.3777 -0.6324 -4.8682 18 6 3.7574 -1.6155 -5.6653 19 6 4.6850 -1.9827 -6.6648 20 7 5.7725 -1.2868 -6.4940 21 7 5.6221 -0.4381 -5.3901 22 6 6.6289 0.4978 -4.8835 23 6 2.4472 -2.0078 -5.3397 24 8 1.8035 -2.9481 -6.0705 25 7 1.8569 -1.4348 -4.2990 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.7081 1.1610 3.4844 30 1 0.3491 -1.9549 -1.3693 31 1 1.8134 -2.5258 -2.2045 32 1 1.7059 -2.6221 -0.4301 33 1 0.6815 0.1053 -2.6087 34 1 2.1026 1.1189 -2.2604 35 1 4.5203 -2.7161 -7.4403 36 1 6.5057 1.4639 -5.3729 37 1 6.5049 0.6173 -3.8071 38 1 7.6251 0.1084 -5.0935 39 1 1.2959 -2.5905 -6.8119 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116344750.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:42 Heat of formation + Delta-G solvation = 100.399464 kcal Electronic energy + Delta-G solvation = -23215.151802 eV Core-core repulsion = 19775.101896 eV Total energy + Delta-G solvation = -3440.049905 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.17865 -39.45513 -37.98071 -36.78192 -33.81001 -32.88139 -32.45720 -30.84350 -28.67919 -27.38431 -27.01644 -25.19739 -24.63344 -23.58896 -22.05224 -21.19859 -19.33142 -18.70233 -18.51059 -17.31344 -16.44729 -16.14297 -15.69902 -15.30050 -14.84564 -14.43101 -14.35245 -14.04097 -13.65029 -13.38228 -12.85993 -12.82169 -12.49212 -12.44504 -12.22404 -11.63483 -11.47420 -11.14089 -11.02046 -10.92157 -10.76400 -10.66462 -10.58484 -10.45698 -10.01226 -9.84878 -9.30917 -9.20084 -8.91463 -8.78092 -8.35906 -7.20202 -5.98769 -4.01970 0.39584 1.16109 1.90335 2.20328 3.18914 3.35320 3.39092 3.42488 3.62795 3.90145 3.97366 4.44425 4.48302 4.64361 4.80943 5.06144 5.13442 5.17372 5.24300 5.33984 5.36582 5.76828 5.92896 6.02756 6.21274 6.29259 6.44149 6.50228 6.70769 6.85383 6.92958 7.00496 7.10691 7.11292 7.27281 7.43491 7.72289 7.84296 8.09564 8.20267 8.36848 8.56636 9.02904 9.62547 11.08355 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021553 B = 0.003975 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.824067 B = 7042.415510 C = 7657.630887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.214 3.786 3 H 0.042 0.958 4 C -0.497 4.497 5 H 0.061 0.939 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.525 5.525 13 C 0.034 3.966 14 C 0.117 3.883 15 C 0.417 3.583 16 N -0.520 5.520 17 C 0.357 3.643 18 C -0.311 4.311 19 C 0.107 3.893 20 N -0.248 5.248 21 N -0.383 5.383 22 C 0.110 3.890 23 C 0.447 3.553 24 O -0.471 6.471 25 N -0.553 5.553 26 H 0.034 0.966 27 H 0.008 0.992 28 H 0.089 0.911 29 H 0.261 0.739 30 H 0.026 0.974 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.201 0.799 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.661 -2.248 -19.191 19.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.108 3.892 3 H 0.060 0.940 4 C -0.536 4.536 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.250 5.250 13 C -0.114 4.114 14 C -0.013 4.013 15 C 0.146 3.854 16 N -0.243 5.243 17 C 0.110 3.890 18 C -0.326 4.326 19 C -0.090 4.090 20 N -0.062 5.062 21 N -0.173 5.173 22 C -0.031 4.031 23 C 0.248 3.752 24 O -0.279 6.279 25 N -0.281 5.281 26 H 0.053 0.947 27 H 0.027 0.973 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.217 0.783 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 6.288 -1.771 -18.254 19.388 hybrid contribution -1.095 -0.700 0.023 1.300 sum 5.193 -2.471 -18.231 19.117 Atomic orbital electron populations 1.22427 1.00540 0.99696 1.00625 1.19354 0.89943 0.94571 0.85343 0.93981 1.21029 1.30565 1.12482 0.89479 0.92061 1.24895 0.95243 0.95142 0.98901 1.69868 1.37008 1.23053 1.23506 0.86576 0.79202 0.79618 0.82085 1.20290 1.21401 1.20385 1.62391 1.59095 1.02595 1.00941 1.22276 0.97023 0.91300 1.00803 1.20891 0.96407 0.97626 0.86419 1.23153 0.84762 0.85585 0.91887 1.67473 1.08697 1.31729 1.16410 1.19137 0.87644 0.91469 0.90780 1.20326 0.99679 1.07525 1.05026 1.23729 0.89081 0.98244 0.97961 1.76933 1.22327 1.04911 1.01983 1.48274 1.10338 1.34939 1.23747 1.21922 0.89987 0.90485 1.00718 1.18956 0.85744 0.83255 0.87249 1.84645 1.67739 1.30228 1.45278 1.68018 1.39836 1.12063 1.08147 0.94726 0.97292 0.89195 0.92953 0.95590 0.93805 0.91082 0.92103 0.88420 0.78284 0.90763 0.88500 0.89184 0.73053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.22 37.16 0.31 -3.82 16 2 C 0.21 5.32 2.31 -68.87 -0.16 5.16 16 3 H 0.04 1.13 7.93 -51.93 -0.41 0.72 16 4 C -0.50 -13.59 7.97 -34.44 -0.27 -13.86 16 5 H 0.06 1.70 7.10 -52.49 -0.37 1.33 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.20 11.32 55.43 0.63 -24.58 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.53 -11.57 4.69 -237.73 -1.12 -12.69 16 13 C 0.03 0.72 8.58 60.06 0.52 1.24 16 14 C 0.12 2.20 4.94 -4.97 -0.02 2.17 16 15 C 0.42 7.39 6.42 -157.14 -1.01 6.39 16 16 N -0.52 -9.14 10.35 -10.10 -0.10 -9.24 16 17 C 0.36 5.58 8.04 -156.24 -1.26 4.32 16 18 C -0.31 -4.23 6.19 -106.85 -0.66 -4.89 16 19 C 0.11 1.16 12.05 -17.10 -0.21 0.95 16 20 N -0.25 -3.08 12.45 30.81 0.38 -2.70 16 21 N -0.38 -5.14 4.05 -67.24 -0.27 -5.41 16 22 C 0.11 1.07 11.47 59.84 0.69 1.76 16 23 C 0.45 6.13 7.90 -16.31 -0.13 6.00 16 24 O -0.47 -4.79 13.58 -17.79 -0.24 -5.03 16 25 N -0.55 -9.10 9.11 -10.53 -0.10 -9.19 16 26 H 0.03 0.80 6.33 -51.93 -0.33 0.47 16 27 H 0.01 0.18 6.91 -51.93 -0.36 -0.18 16 28 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.03 0.53 6.21 -51.93 -0.32 0.21 16 31 H 0.04 0.88 6.32 -51.93 -0.33 0.55 16 32 H 0.07 1.57 6.86 -51.93 -0.36 1.21 16 33 H 0.06 1.11 7.06 -51.93 -0.37 0.74 16 34 H 0.10 1.80 7.93 -51.93 -0.41 1.38 16 35 H 0.20 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.41 1.79 9.06 45.56 0.41 2.20 16 LS Contribution 324.37 15.07 4.89 4.89 Total: -1.00 -32.93 324.37 -7.24 -40.17 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -3.99 Total: 0.45 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -2.31 Total: 6.94 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -0.58 Total: -63.81 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.24 Total: -5.03 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.93 -7.24 -40.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116344750.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.569 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds