Wall clock time and date at job start Tue Mar 31 2020 07:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99904 * 2 1 4 4 H 1.48499 * 109.47120 * 240.00312 * 3 2 1 5 5 H 1.48495 * 109.47102 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47059 * 120.00508 * 3 2 1 7 7 C 1.37877 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00697 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99545 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46938 * 300.00078 * 9 7 2 11 11 O 1.42900 * 109.47600 * 59.99773 * 9 7 2 12 12 C 1.53001 * 109.47107 * 180.02562 * 9 7 2 13 13 N 1.46897 * 109.47204 * 179.97438 * 12 9 7 14 14 C 1.46848 * 111.00325 * 190.00064 * 13 12 9 15 15 C 1.53035 * 109.52449 * 185.83820 * 14 13 12 16 16 C 1.53115 * 109.28154 * 300.81845 * 15 14 13 17 17 C 1.50698 * 109.52505 * 177.55898 * 16 15 14 18 18 C 1.38269 * 119.94432 * 120.12656 * 17 16 15 19 19 C 1.38137 * 120.06013 * 180.02562 * 18 17 16 20 20 C 1.38737 * 119.94162 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05545 * 180.02562 * 20 19 18 22 22 C 1.38734 * 119.88732 * 0.27760 * 20 19 18 23 23 C 1.38140 * 119.94299 * 359.46795 * 22 20 19 24 24 C 1.53120 * 109.21043 * 57.62148 * 16 15 14 25 25 C 1.46847 * 110.99989 * 314.20808 * 13 12 9 26 26 H 0.96998 * 120.00060 * 359.97438 * 1 2 3 27 27 H 0.96698 * 113.99317 * 59.99678 * 11 9 7 28 28 H 1.09003 * 109.46897 * 59.99990 * 12 9 7 29 29 H 1.08995 * 109.46971 * 299.99558 * 12 9 7 30 30 H 1.08999 * 109.46216 * 65.82279 * 14 13 12 31 31 H 1.08997 * 109.44985 * 305.85028 * 14 13 12 32 32 H 1.09010 * 109.50045 * 180.87614 * 15 14 13 33 33 H 1.09000 * 109.50218 * 60.76119 * 15 14 13 34 34 H 1.08999 * 109.52199 * 297.68811 * 16 15 14 35 35 H 1.08008 * 119.96973 * 0.02562 * 18 17 16 36 36 H 1.07997 * 120.03660 * 179.97438 * 19 18 17 37 37 H 0.96700 * 114.00170 * 90.00174 * 21 20 19 38 38 H 1.07999 * 120.02623 * 179.72382 * 22 20 19 39 39 H 1.08003 * 119.97390 * 180.23377 * 23 22 20 40 40 H 1.08997 * 109.50164 * 62.32201 * 24 16 15 41 41 H 1.08998 * 109.50156 * 182.43420 * 24 16 15 42 42 H 1.08997 * 109.46492 * 294.17456 * 25 13 12 43 43 H 1.09002 * 109.46267 * 54.15924 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5570 0.8897 11 8 0.4289 -2.5746 -1.1669 12 6 2.2453 -3.6620 -0.0005 13 7 1.5108 -4.9342 0.0001 14 6 2.4169 -6.0650 0.2382 15 6 1.6461 -7.3785 0.0879 16 6 0.4916 -7.4051 1.0934 17 6 -0.3073 -8.6696 0.9096 18 6 -0.4330 -9.5647 1.9560 19 6 -1.1643 -10.7248 1.7900 20 6 -1.7734 -10.9912 0.5722 21 8 -2.4938 -12.1315 0.4066 22 6 -1.6413 -10.0940 -0.4777 23 6 -0.9133 -8.9328 -0.3049 24 6 -0.4107 -6.1908 0.8567 25 6 0.4201 -4.9117 0.9832 26 1 -0.4850 0.8400 0.0004 27 1 0.9208 -2.5291 -1.9983 28 1 2.8719 -3.6043 0.8895 29 1 2.8718 -3.6043 -0.8905 30 1 2.8255 -5.9970 1.2464 31 1 3.2308 -6.0366 -0.4862 32 1 2.3154 -8.2172 0.2800 33 1 1.2489 -7.4536 -0.9243 34 1 0.8906 -7.3703 2.1071 35 1 0.0410 -9.3566 2.9039 36 1 -1.2620 -11.4239 2.6074 37 1 -3.4301 -12.0413 0.6307 38 1 -2.1108 -10.3013 -1.4279 39 1 -0.8133 -8.2322 -1.1208 40 1 -0.8412 -6.2467 -0.1431 41 1 -1.2100 -6.1815 1.5977 42 1 0.8380 -4.8491 1.9879 43 1 -0.2163 -4.0460 0.7998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117570669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:21 Heat of formation + Delta-G solvation = -74.059646 kcal Electronic energy + Delta-G solvation = -23122.910367 eV Core-core repulsion = 19746.542939 eV Total energy + Delta-G solvation = -3376.367428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16374 -38.74740 -37.04670 -35.50774 -33.21590 -32.07378 -31.13671 -30.56774 -29.55492 -27.64109 -25.04386 -23.43883 -23.05595 -22.77497 -21.43136 -20.04948 -19.17781 -18.57676 -17.11961 -16.22923 -15.82167 -15.46713 -14.85584 -14.72433 -14.58052 -14.22771 -14.21285 -13.90666 -13.61214 -13.47210 -13.26233 -12.84216 -12.56786 -12.22121 -12.14832 -12.01374 -11.62628 -11.15395 -10.99540 -10.89900 -10.83073 -10.82212 -10.68130 -10.45234 -10.18868 -10.15595 -9.95757 -9.11655 -8.89192 -8.57608 -8.49418 -8.05584 -7.64475 -6.00922 -4.18902 1.09484 1.22439 3.28449 3.33888 3.35533 3.47825 4.04750 4.33899 4.51565 4.64294 4.71788 4.83316 5.04289 5.12944 5.26785 5.27062 5.35454 5.43569 5.52355 5.67137 5.72998 5.85120 5.86559 5.89634 5.95296 6.05540 6.10541 6.20681 6.25231 6.27960 6.31003 6.33306 6.45049 6.54295 6.62010 6.68515 6.71240 6.86163 7.44489 7.61581 7.70926 7.79972 7.86306 8.20621 8.84396 9.45058 9.61110 11.03212 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040031 B = 0.002866 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.297071 B = 9768.678595 C = 9999.782155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.230 3.770 10 H 0.058 0.942 11 O -0.556 6.556 12 C 0.030 3.970 13 N -0.528 5.528 14 C 0.053 3.947 15 C -0.104 4.104 16 C -0.051 4.051 17 C -0.074 4.074 18 C -0.104 4.104 19 C -0.145 4.145 20 C 0.091 3.909 21 O -0.502 6.502 22 C -0.142 4.142 23 C -0.095 4.095 24 C -0.104 4.104 25 C 0.052 3.948 26 H 0.261 0.739 27 H 0.345 0.655 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.387 0.613 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.022 0.978 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.261 -19.653 2.495 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.613 4.613 8 H 0.072 0.928 9 C 0.172 3.828 10 H 0.075 0.925 11 O -0.358 6.358 12 C -0.097 4.097 13 N -0.252 5.252 14 C -0.075 4.075 15 C -0.141 4.141 16 C -0.069 4.069 17 C -0.074 4.074 18 C -0.122 4.122 19 C -0.163 4.163 20 C 0.047 3.953 21 O -0.312 6.312 22 C -0.161 4.161 23 C -0.113 4.113 24 C -0.142 4.142 25 C -0.076 4.076 26 H 0.071 0.929 27 H 0.188 0.812 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.243 0.757 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.581 -19.886 2.319 20.186 hybrid contribution 0.966 1.216 0.670 1.691 sum -1.615 -18.670 2.989 18.976 Atomic orbital electron populations 1.70056 1.05894 1.26528 1.47005 1.25014 0.94692 0.99055 0.93852 0.86737 0.79724 0.83228 0.78669 1.20127 1.21197 1.20247 1.21623 0.93134 0.91651 1.54911 0.92795 1.19430 0.87844 0.88872 0.86615 0.92470 1.86530 1.37844 1.96302 1.15112 1.23044 0.97544 0.89683 0.99464 1.61948 1.11115 1.02850 1.49301 1.22078 0.95162 0.91288 0.98993 1.21626 0.96296 0.96634 0.99593 1.20283 0.95116 0.91610 0.99898 1.20011 0.97659 0.96153 0.93552 1.20979 0.98855 0.93539 0.98839 1.21364 1.00263 0.97825 0.96897 1.18469 0.97064 0.86695 0.93080 1.84820 1.24772 1.31685 1.89956 1.21420 1.01408 0.94043 0.99226 1.20998 0.96381 0.96412 0.97491 1.21656 0.97184 0.92908 1.02431 1.22191 0.94173 0.98669 0.92555 0.92937 0.81177 0.95700 0.91780 0.95736 0.91250 0.92106 0.90939 0.90929 0.85776 0.85740 0.75715 0.85568 0.85155 0.90867 0.91965 0.96026 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.17 12.84 55.43 0.71 -24.46 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.57 -15.64 8.76 -34.44 -0.30 -15.94 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.23 5.71 2.12 -27.88 -0.06 5.65 16 10 H 0.06 1.55 6.21 -51.93 -0.32 1.23 16 11 O -0.56 -14.16 12.40 -35.23 -0.44 -14.59 16 12 C 0.03 0.62 4.88 -3.83 -0.02 0.60 16 13 N -0.53 -9.41 4.67 -234.67 -1.10 -10.50 16 14 C 0.05 0.78 5.42 -3.83 -0.02 0.76 16 15 C -0.10 -1.30 5.22 -26.65 -0.14 -1.44 16 16 C -0.05 -0.62 2.43 -91.65 -0.22 -0.84 16 17 C -0.07 -0.84 4.79 -104.60 -0.50 -1.34 16 18 C -0.10 -1.09 9.66 -39.61 -0.38 -1.47 16 19 C -0.14 -1.47 9.99 -39.43 -0.39 -1.86 16 20 C 0.09 0.96 6.71 -39.21 -0.26 0.69 16 21 O -0.50 -4.65 13.50 -19.41 -0.26 -4.91 16 22 C -0.14 -1.51 9.99 -39.43 -0.39 -1.90 16 23 C -0.09 -1.06 8.66 -39.61 -0.34 -1.41 16 24 C -0.10 -1.48 5.23 -26.65 -0.14 -1.61 16 25 C 0.05 0.91 4.85 -3.83 -0.02 0.89 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.34 7.99 9.04 45.56 0.41 8.40 16 28 H 0.02 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 32 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.07 0.94 7.31 -51.93 -0.38 0.56 16 34 H 0.07 0.87 7.88 -51.93 -0.41 0.46 16 35 H 0.12 1.10 7.94 -52.48 -0.42 0.69 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.39 1.72 9.06 45.56 0.41 2.13 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.13 1.42 7.05 -52.48 -0.37 1.05 16 40 H 0.07 1.08 7.31 -51.93 -0.38 0.70 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 2.05 5.66 -51.93 -0.29 1.75 16 LS Contribution 344.89 15.07 5.20 5.20 Total: -1.00 -31.12 344.89 -9.29 -40.41 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.09 Total: 9.92 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -3.29 Total: -17.09 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.39 Total: -34.96 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.70 Total: -19.51 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.12 -9.29 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117570669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.654 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds