Wall clock time and date at job start Tue Mar 31 2020 07:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99904 * 2 1 4 4 H 1.48499 * 109.47120 * 240.00312 * 3 2 1 5 5 H 1.48495 * 109.47102 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47059 * 120.00508 * 3 2 1 7 7 C 1.37877 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00697 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99545 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46938 * 300.00078 * 9 7 2 11 11 O 1.42900 * 109.47600 * 59.99773 * 9 7 2 12 12 C 1.53001 * 109.47107 * 180.02562 * 9 7 2 13 13 N 1.46897 * 109.47204 * 179.97438 * 12 9 7 14 14 C 1.46848 * 111.00325 * 190.00064 * 13 12 9 15 15 C 1.53035 * 109.52449 * 185.83820 * 14 13 12 16 16 C 1.53115 * 109.28154 * 300.81845 * 15 14 13 17 17 C 1.50698 * 109.52505 * 177.55898 * 16 15 14 18 18 C 1.38269 * 119.94432 * 120.12656 * 17 16 15 19 19 C 1.38137 * 120.06013 * 180.02562 * 18 17 16 20 20 C 1.38737 * 119.94162 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05545 * 180.02562 * 20 19 18 22 22 C 1.38734 * 119.88732 * 0.27760 * 20 19 18 23 23 C 1.38140 * 119.94299 * 359.46795 * 22 20 19 24 24 C 1.53120 * 109.21043 * 57.62148 * 16 15 14 25 25 C 1.46847 * 110.99989 * 314.20808 * 13 12 9 26 26 H 0.96998 * 120.00060 * 359.97438 * 1 2 3 27 27 H 0.96698 * 113.99317 * 59.99678 * 11 9 7 28 28 H 1.09003 * 109.46897 * 59.99990 * 12 9 7 29 29 H 1.08995 * 109.46971 * 299.99558 * 12 9 7 30 30 H 1.08999 * 109.46216 * 65.82279 * 14 13 12 31 31 H 1.08997 * 109.44985 * 305.85028 * 14 13 12 32 32 H 1.09010 * 109.50045 * 180.87614 * 15 14 13 33 33 H 1.09000 * 109.50218 * 60.76119 * 15 14 13 34 34 H 1.08999 * 109.52199 * 297.68811 * 16 15 14 35 35 H 1.08008 * 119.96973 * 0.02562 * 18 17 16 36 36 H 1.07997 * 120.03660 * 179.97438 * 19 18 17 37 37 H 0.96700 * 114.00170 * 90.00174 * 21 20 19 38 38 H 1.07999 * 120.02623 * 179.72382 * 22 20 19 39 39 H 1.08003 * 119.97390 * 180.23377 * 23 22 20 40 40 H 1.08997 * 109.50164 * 62.32201 * 24 16 15 41 41 H 1.08998 * 109.50156 * 182.43420 * 24 16 15 42 42 H 1.08997 * 109.46492 * 294.17456 * 25 13 12 43 43 H 1.09002 * 109.46267 * 54.15924 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5570 0.8897 11 8 0.4289 -2.5746 -1.1669 12 6 2.2453 -3.6620 -0.0005 13 7 1.5108 -4.9342 0.0001 14 6 2.4169 -6.0650 0.2382 15 6 1.6461 -7.3785 0.0879 16 6 0.4916 -7.4051 1.0934 17 6 -0.3073 -8.6696 0.9096 18 6 -0.4330 -9.5647 1.9560 19 6 -1.1643 -10.7248 1.7900 20 6 -1.7734 -10.9912 0.5722 21 8 -2.4938 -12.1315 0.4066 22 6 -1.6413 -10.0940 -0.4777 23 6 -0.9133 -8.9328 -0.3049 24 6 -0.4107 -6.1908 0.8567 25 6 0.4201 -4.9117 0.9832 26 1 -0.4850 0.8400 0.0004 27 1 0.9208 -2.5291 -1.9983 28 1 2.8719 -3.6043 0.8895 29 1 2.8718 -3.6043 -0.8905 30 1 2.8255 -5.9970 1.2464 31 1 3.2308 -6.0366 -0.4862 32 1 2.3154 -8.2172 0.2800 33 1 1.2489 -7.4536 -0.9243 34 1 0.8906 -7.3703 2.1071 35 1 0.0410 -9.3566 2.9039 36 1 -1.2620 -11.4239 2.6074 37 1 -3.4301 -12.0413 0.6307 38 1 -2.1108 -10.3013 -1.4279 39 1 -0.8133 -8.2322 -1.1208 40 1 -0.8412 -6.2467 -0.1431 41 1 -1.2100 -6.1815 1.5977 42 1 0.8380 -4.8491 1.9879 43 1 -0.2163 -4.0460 0.7998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117570669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:21 Heat of formation + Delta-G solvation = -96.913014 kcal Electronic energy + Delta-G solvation = -23123.901363 eV Core-core repulsion = 19746.542939 eV Total energy + Delta-G solvation = -3377.358424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.05748 -39.90781 -38.13885 -37.07169 -34.53734 -34.17326 -31.91266 -31.79568 -30.83359 -29.20954 -26.65543 -24.84719 -24.13020 -23.76608 -22.55006 -21.57891 -20.37040 -19.30355 -19.11723 -17.20468 -16.75729 -16.66699 -16.47773 -16.25149 -16.05024 -15.74118 -15.47024 -15.12909 -14.86353 -14.62992 -14.35666 -14.15978 -13.99102 -13.31273 -13.23559 -13.10647 -12.94710 -12.85833 -12.71011 -12.65823 -12.42048 -12.11957 -12.03414 -11.69998 -11.51883 -11.33537 -11.14315 -10.84737 -10.62658 -10.04526 -9.89975 -9.35214 -9.09605 -8.12791 -6.38404 0.30357 0.44120 1.40780 1.42188 1.50357 2.38788 2.70422 3.08987 3.14063 3.35891 3.69815 3.79111 3.99940 4.09474 4.12611 4.28822 4.30762 4.36131 4.42508 4.48567 4.53874 4.58687 4.63227 4.71262 4.80049 4.86464 4.97888 5.00407 5.05815 5.07476 5.13326 5.22485 5.23023 5.42060 5.44155 5.50754 5.61756 5.76191 5.78039 5.94523 6.03377 6.25297 6.38716 6.74571 6.88398 7.35356 7.61526 8.91275 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040031 B = 0.002866 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.297071 B = 9768.678595 C = 9999.782155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.027 3.973 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.590 4.590 8 H 0.058 0.942 9 C 0.232 3.768 10 H 0.027 0.973 11 O -0.570 6.570 12 C 0.046 3.954 13 N -0.534 5.534 14 C 0.052 3.948 15 C -0.097 4.097 16 C -0.041 4.041 17 C -0.085 4.085 18 C -0.105 4.105 19 C -0.150 4.150 20 C 0.090 3.910 21 O -0.512 6.512 22 C -0.152 4.152 23 C -0.103 4.103 24 C -0.095 4.095 25 C 0.057 3.943 26 H 0.261 0.739 27 H 0.353 0.647 28 H 0.022 0.978 29 H 0.069 0.931 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.408 0.592 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.020 0.980 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 -21.109 2.825 21.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.783 3.217 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.629 4.629 8 H 0.076 0.924 9 C 0.174 3.826 10 H 0.045 0.955 11 O -0.373 6.373 12 C -0.082 4.082 13 N -0.258 5.258 14 C -0.076 4.076 15 C -0.134 4.134 16 C -0.059 4.059 17 C -0.085 4.085 18 C -0.122 4.122 19 C -0.168 4.168 20 C 0.046 3.954 21 O -0.325 6.325 22 C -0.171 4.171 23 C -0.121 4.121 24 C -0.133 4.133 25 C -0.071 4.071 26 H 0.070 0.930 27 H 0.198 0.802 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.267 0.733 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.038 0.962 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.664 -21.361 2.649 21.589 hybrid contribution 0.616 1.586 0.567 1.793 sum -1.048 -19.775 3.216 20.062 Atomic orbital electron populations 1.70201 1.07596 1.27390 1.48339 1.25875 0.95486 1.02823 0.93404 0.85629 0.78379 0.78582 0.79074 1.19188 1.21021 1.19440 1.22041 0.93516 0.92930 1.54374 0.92419 1.19272 0.87809 0.90120 0.85352 0.95537 1.86485 1.38627 1.96431 1.15731 1.22687 0.96298 0.89695 0.99520 1.61925 1.11600 1.02610 1.49711 1.22188 0.95083 0.90857 0.99444 1.21586 0.96476 0.95877 0.99504 1.20154 0.94625 0.90987 1.00182 1.19913 0.98405 0.96072 0.94100 1.21176 0.98599 0.93335 0.99140 1.21585 0.99857 0.98038 0.97324 1.18604 0.96999 0.86685 0.93141 1.84761 1.26446 1.31205 1.90080 1.21569 1.01541 0.94009 0.99931 1.21045 0.96756 0.96735 0.97532 1.21557 0.97235 0.92281 1.02208 1.22061 0.93896 0.98869 0.92310 0.93002 0.80249 0.95931 0.91292 0.95350 0.90441 0.89970 0.91354 0.90175 0.84177 0.84019 0.73276 0.84607 0.85488 0.91719 0.91243 0.96173 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.80 12.84 21.45 0.28 -53.53 16 2 C 0.03 1.49 5.40 84.66 0.46 1.95 16 3 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.59 -32.50 8.76 25.60 0.22 -32.28 16 8 H 0.06 3.06 7.74 -2.92 -0.02 3.04 16 9 C 0.23 11.87 2.12 29.85 0.06 11.94 16 10 H 0.03 1.53 6.21 -2.39 -0.01 1.51 16 11 O -0.57 -29.92 12.40 -148.98 -1.85 -31.76 16 12 C 0.05 1.90 4.88 86.30 0.42 2.32 16 13 N -0.53 -19.03 4.67 -896.36 -4.19 -23.22 16 14 C 0.05 1.45 5.42 86.32 0.47 1.92 16 15 C -0.10 -2.23 5.22 30.64 0.16 -2.07 16 16 C -0.04 -0.94 2.43 -11.46 -0.03 -0.96 16 17 C -0.08 -1.79 4.79 -19.85 -0.10 -1.88 16 18 C -0.10 -1.94 9.66 22.25 0.22 -1.72 16 19 C -0.15 -2.66 9.99 22.37 0.22 -2.44 16 20 C 0.09 1.71 6.71 22.51 0.15 1.86 16 21 O -0.51 -8.33 13.50 -92.38 -1.25 -9.58 16 22 C -0.15 -3.00 9.99 22.37 0.22 -2.78 16 23 C -0.10 -2.18 8.66 22.25 0.19 -1.99 16 24 C -0.10 -2.68 5.23 30.65 0.16 -2.52 16 25 C 0.06 2.03 4.85 86.33 0.42 2.45 16 26 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 27 H 0.35 16.74 9.04 -74.06 -0.67 16.08 16 28 H 0.02 0.93 8.08 -2.39 -0.02 0.91 16 29 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 32 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.07 1.66 7.31 -2.39 -0.02 1.64 16 34 H 0.08 1.73 7.88 -2.39 -0.02 1.71 16 35 H 0.14 2.09 7.94 -2.91 -0.02 2.06 16 36 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.41 2.69 9.06 -74.06 -0.67 2.02 16 38 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 39 H 0.13 2.71 7.05 -2.91 -0.02 2.69 16 40 H 0.06 1.93 7.31 -2.39 -0.02 1.91 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 2.53 5.66 -2.39 -0.01 2.51 16 Total: -1.00 -66.84 344.89 -2.05 -68.89 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -0.32 Total: 30.05 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 3.25 Total: -26.21 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -3.91 Total: -76.75 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -3.09 Total: -41.34 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -66.84 -2.05 -68.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117570669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.023 kcal (2) G-P(sol) polarization free energy of solvation -66.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds