Wall clock time and date at job start Tue Mar 31 2020 07:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46808 * 196.19469 * 3 2 1 5 5 C 1.50704 * 109.46862 * 60.00048 * 4 3 2 6 6 O 1.20823 * 120.00168 * 353.55851 * 5 4 3 7 7 O 1.34235 * 119.99926 * 173.55082 * 5 4 3 8 8 C 1.45200 * 116.99981 * 185.29857 * 7 5 4 9 9 C 1.52997 * 109.46793 * 183.83780 * 8 7 5 10 10 C 1.50700 * 115.55106 * 64.85759 * 9 8 7 11 11 H 1.07993 * 120.00333 * 266.69201 * 10 9 8 12 12 C 1.37883 * 119.99864 * 86.69092 * 10 9 8 13 13 N 1.31517 * 119.99656 * 178.88897 * 12 10 9 14 14 Si 1.86799 * 120.00054 * 358.88838 * 12 10 9 15 15 H 1.48491 * 109.47126 * 90.36563 * 14 12 10 16 16 H 1.48502 * 109.46908 * 210.36706 * 14 12 10 17 17 H 1.48504 * 109.47139 * 330.36379 * 14 12 10 18 18 C 1.53002 * 117.50395 * 279.18315 * 9 8 7 19 19 C 1.53009 * 117.49895 * 210.52642 * 9 8 7 20 20 C 1.53004 * 109.46900 * 76.19810 * 3 2 1 21 21 C 1.52999 * 109.47111 * 299.99473 * 20 3 2 22 22 C 1.52996 * 109.47085 * 300.00457 * 21 20 3 23 23 C 1.52995 * 109.47497 * 60.00214 * 22 21 20 24 24 C 1.52998 * 109.46989 * 316.19544 * 3 2 1 25 25 H 1.09001 * 109.47125 * 179.97438 * 4 3 2 26 26 H 1.08998 * 109.47467 * 300.00335 * 4 3 2 27 27 H 1.08994 * 109.47292 * 303.83807 * 8 7 5 28 28 H 1.09004 * 109.46511 * 63.84034 * 8 7 5 29 29 H 0.96996 * 119.99564 * 180.02562 * 13 12 10 30 30 H 1.09007 * 117.49280 * 0.02562 * 18 9 8 31 31 H 1.08992 * 117.50182 * 145.01802 * 18 9 8 32 32 H 1.08998 * 117.49444 * 214.98617 * 19 9 8 33 33 H 1.08997 * 117.49325 * 359.97438 * 19 9 8 34 34 H 1.09001 * 109.46654 * 179.97438 * 20 3 2 35 35 H 1.08999 * 109.47062 * 60.00406 * 20 3 2 36 36 H 1.08994 * 109.46910 * 179.97438 * 21 20 3 37 37 H 1.09001 * 109.47125 * 60.00578 * 21 20 3 38 38 H 1.09004 * 109.46767 * 180.02562 * 22 21 20 39 39 H 1.08995 * 109.47141 * 299.99341 * 22 21 20 40 40 H 1.09001 * 109.47009 * 59.99698 * 23 22 21 41 41 H 1.09003 * 109.47493 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.46599 * 179.97438 * 24 3 2 43 43 H 1.08996 * 109.47199 * 300.00089 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.3862 0.4023 5 6 2.6147 1.7249 1.7821 6 8 1.8277 0.9935 2.3349 7 8 3.0416 2.8391 2.3971 8 6 2.6093 3.0420 3.7683 9 6 3.1115 4.3989 4.2658 10 6 2.5402 5.6019 3.5603 11 1 3.0631 6.0339 2.7200 12 6 1.3498 6.1509 3.9878 13 7 0.8623 7.2138 3.3860 14 14 0.4295 5.3849 5.4215 15 1 0.8788 6.0124 6.6901 16 1 -1.0287 5.6065 5.2489 17 1 0.7067 3.9266 5.4653 18 6 4.5624 4.4834 4.7438 19 6 3.4177 4.5349 5.7587 20 6 3.1181 -0.3433 -1.4009 21 6 2.6088 -1.7288 -1.8032 22 6 3.1193 -2.7695 -0.8047 23 6 2.6091 -2.4257 0.5961 24 6 3.1184 -1.0402 0.9985 25 1 4.2073 1.3866 0.4028 26 1 2.7536 2.1277 -0.3090 27 1 1.5205 3.0188 3.8133 28 1 3.0160 2.2509 4.3983 29 1 0.0251 7.6002 3.6869 30 1 5.1594 3.5722 4.7035 31 1 5.1037 5.4090 4.5484 32 1 3.2062 5.4945 6.2305 33 1 3.2610 3.6577 6.3865 34 1 4.2081 -0.3423 -1.4010 35 1 2.7545 0.3983 -2.1122 36 1 2.9718 -1.9735 -2.8014 37 1 1.5188 -1.7293 -1.8033 38 1 2.7568 -3.7567 -1.0917 39 1 4.2093 -2.7691 -0.8048 40 1 1.5191 -2.4262 0.5960 41 1 2.9725 -3.1674 1.3074 42 1 4.2085 -1.0399 0.9981 43 1 2.7550 -0.7951 1.9964 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118479387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:26 Heat of formation + Delta-G solvation = -52.897836 kcal Electronic energy + Delta-G solvation = -23696.844998 eV Core-core repulsion = 20321.395215 eV Total energy + Delta-G solvation = -3375.449783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.72564 -39.14487 -37.12978 -35.69633 -35.44094 -33.17043 -32.12336 -31.09699 -28.46807 -26.77666 -25.23460 -23.26494 -22.99171 -21.76240 -21.19372 -20.27491 -19.18211 -17.31940 -16.95748 -16.53260 -16.02946 -15.76575 -15.21664 -14.94648 -14.72227 -14.41918 -13.87960 -13.71863 -13.43476 -13.17393 -12.99468 -12.71415 -12.56624 -12.32177 -12.19733 -11.98915 -11.97240 -11.81820 -11.63138 -11.36215 -11.16864 -10.91896 -10.79359 -10.66762 -10.55836 -10.39348 -10.28187 -9.98647 -9.90789 -9.62358 -9.06465 -8.61526 -8.60813 -6.14125 -4.17249 2.53538 2.86653 2.96494 3.09426 3.25984 3.36840 3.38965 3.81105 4.33288 4.38249 4.44561 4.50240 4.74807 4.76844 4.92547 4.96171 5.11363 5.14246 5.20473 5.28307 5.33327 5.38242 5.46686 5.54618 5.62644 5.64650 5.77037 5.85115 5.86225 5.92394 5.94969 5.97943 6.08657 6.13173 6.14039 6.26495 6.38496 6.63560 6.88745 7.04142 7.10909 7.66672 7.75178 8.18099 8.47268 8.90508 9.48187 10.97727 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.004012 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.538916 B = 6977.146731 C = 7265.999502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.226 3.774 3 C 0.055 3.945 4 C -0.110 4.110 5 C 0.451 3.549 6 O -0.514 6.514 7 O -0.329 6.329 8 C 0.108 3.892 9 C -0.006 4.006 10 C -0.483 4.483 11 H 0.082 0.918 12 C 0.077 3.923 13 N -0.895 5.895 14 Si 0.875 3.125 15 H -0.275 1.275 16 H -0.292 1.292 17 H -0.262 1.262 18 C -0.172 4.172 19 C -0.191 4.191 20 C -0.107 4.107 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.120 4.120 25 H 0.124 0.876 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.265 0.735 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.541 -17.687 -7.832 21.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.093 4.093 3 C 0.051 3.949 4 C -0.148 4.148 5 C 0.294 3.706 6 O -0.404 6.404 7 O -0.243 6.243 8 C 0.035 3.965 9 C -0.007 4.007 10 C -0.520 4.520 11 H 0.099 0.901 12 C -0.125 4.125 13 N -0.532 5.532 14 Si 0.703 3.297 15 H -0.201 1.201 16 H -0.218 1.218 17 H -0.186 1.186 18 C -0.209 4.209 19 C -0.229 4.229 20 C -0.145 4.145 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.159 4.159 24 C -0.158 4.158 25 H 0.142 0.858 26 H 0.134 0.866 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.404 -17.709 -7.636 20.657 hybrid contribution -0.411 -0.241 1.005 1.112 sum 6.992 -17.949 -6.631 20.373 Atomic orbital electron populations 1.81145 1.12752 1.07856 1.08873 1.28532 0.94512 0.93509 0.92714 1.18145 0.82627 0.95703 0.98410 1.21509 1.04286 0.96339 0.92687 1.23449 0.79070 0.79410 0.88626 1.90620 1.32615 1.50098 1.67075 1.86531 1.68003 1.39658 1.30146 1.23059 0.99818 0.96917 0.76755 1.19325 0.95531 0.93237 0.92560 1.20216 1.06583 1.09143 1.16062 0.90052 1.24987 0.96775 0.94328 0.96438 1.69877 1.20619 1.21422 1.41271 0.86926 0.78815 0.80805 0.83157 1.20108 1.21829 1.18606 1.22820 0.91921 1.01396 1.04744 1.23007 1.05284 1.01728 0.92847 1.21648 1.01970 0.97927 0.93000 1.21582 1.01096 0.94286 0.99166 1.21566 1.00940 0.98466 0.94773 1.21559 1.01064 0.96544 0.96767 1.21881 1.01200 0.93080 0.99675 0.85787 0.86588 0.91375 0.93550 0.92466 0.90763 0.89127 0.88764 0.90760 0.89296 0.90540 0.91110 0.92049 0.91976 0.91435 0.92118 0.91332 0.90019 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.71 18.54 42.15 0.78 -6.93 16 2 C 0.23 3.32 9.39 -20.76 -0.20 3.13 16 3 C 0.05 0.57 0.49 -157.29 -0.08 0.49 16 4 C -0.11 -1.21 4.86 -27.88 -0.14 -1.35 16 5 C 0.45 7.60 7.33 36.01 0.26 7.87 16 6 O -0.51 -9.87 12.29 -18.75 -0.23 -10.10 16 7 O -0.33 -6.54 10.15 -39.27 -0.40 -6.94 16 8 C 0.11 2.33 4.99 37.16 0.19 2.52 16 9 C -0.01 -0.13 1.06 -155.66 -0.17 -0.29 16 10 C -0.48 -13.34 9.36 -34.44 -0.32 -13.66 16 11 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 12 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 13 N -0.89 -27.17 13.96 55.43 0.77 -26.40 16 14 Si 0.88 21.82 24.87 -169.99 -4.23 17.59 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 17 H -0.26 -6.26 5.76 56.52 0.33 -5.93 16 18 C -0.17 -3.35 9.96 -26.69 -0.27 -3.61 16 19 C -0.19 -3.94 7.62 -26.69 -0.20 -4.14 16 20 C -0.11 -0.76 4.71 -26.73 -0.13 -0.88 16 21 C -0.12 -0.90 5.70 -26.73 -0.15 -1.06 16 22 C -0.12 -0.83 5.92 -26.74 -0.16 -0.99 16 23 C -0.12 -1.10 5.70 -26.73 -0.15 -1.25 16 24 C -0.12 -1.18 4.42 -26.73 -0.12 -1.30 16 25 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.62 6.49 -51.93 -0.34 1.29 16 28 H 0.05 0.89 8.09 -51.93 -0.42 0.47 16 29 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.07 1.26 8.14 -51.92 -0.42 0.83 16 31 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 32 H 0.09 2.02 7.28 -51.93 -0.38 1.64 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.57 7.23 -51.93 -0.38 0.20 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.68 7.23 -51.93 -0.38 0.31 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.19 5.76 -51.93 -0.30 0.89 16 LS Contribution 342.89 15.07 5.17 5.17 Total: -1.00 -33.63 342.89 -6.74 -40.37 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.89 Total: -0.35 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -1.72 Total: -12.41 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 1.55 Total: -33.33 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.63 Total: -17.04 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.23 Total: 17.59 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.63 -6.74 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118479387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.528 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds