Wall clock time and date at job start Tue Mar 31 2020 07:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00268 * 2 1 4 4 C 1.39677 * 119.99958 * 179.97438 * 2 1 3 5 5 C 1.38914 * 120.07194 * 359.97438 * 4 2 1 6 6 C 1.38098 * 119.92231 * 180.02562 * 5 4 2 7 7 C 1.38287 * 120.07936 * 0.02562 * 6 5 4 8 8 C 1.50691 * 119.92739 * 179.97438 * 7 6 5 9 9 S 1.81408 * 109.47213 * 90.00320 * 8 7 6 10 10 C 1.81392 * 103.00033 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47237 * 179.97438 * 10 9 8 12 12 C 1.50705 * 115.55013 * 297.82508 * 11 10 9 13 13 H 1.07998 * 119.99773 * 95.15356 * 12 11 10 14 14 C 1.37877 * 119.99810 * 274.88017 * 12 11 10 15 15 N 1.31515 * 119.99919 * 6.56582 * 14 12 11 16 16 Si 1.86794 * 119.99692 * 186.57166 * 14 12 11 17 17 H 1.48503 * 109.47493 * 90.00104 * 16 14 12 18 18 H 1.48507 * 109.47003 * 209.99621 * 16 14 12 19 19 H 1.48504 * 109.47373 * 329.99664 * 16 14 12 20 20 C 1.53001 * 117.49942 * 83.49065 * 11 10 9 21 21 C 1.53001 * 117.50182 * 152.15097 * 11 10 9 22 22 C 1.38287 * 120.14556 * 0.26776 * 7 6 5 23 23 C 1.38107 * 120.07174 * 359.45838 * 22 7 6 24 24 H 1.09004 * 109.47035 * 270.00323 * 1 2 3 25 25 H 1.09000 * 109.47339 * 29.99911 * 1 2 3 26 26 H 1.08997 * 109.47606 * 149.99794 * 1 2 3 27 27 H 1.08999 * 109.46872 * 270.00128 * 3 2 1 28 28 H 1.08996 * 109.46681 * 29.99800 * 3 2 1 29 29 H 1.09000 * 109.47293 * 150.00174 * 3 2 1 30 30 H 1.08005 * 120.03582 * 0.04645 * 5 4 2 31 31 H 1.08001 * 119.96286 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47625 * 330.00090 * 8 7 6 33 33 H 1.09000 * 109.47156 * 209.99948 * 8 7 6 34 34 H 1.08998 * 109.47687 * 60.00144 * 10 9 8 35 35 H 1.09003 * 109.47466 * 299.99497 * 10 9 8 36 36 H 0.97004 * 119.99783 * 184.58326 * 15 14 12 37 37 H 1.09003 * 117.50287 * 215.00334 * 20 11 10 38 38 H 1.09001 * 117.49614 * 0.02754 * 20 11 10 39 39 H 1.08993 * 117.49862 * 359.97438 * 21 11 10 40 40 H 1.09004 * 117.49936 * 144.97194 * 21 11 10 41 41 H 1.08005 * 119.96151 * 179.69981 * 22 7 6 42 42 H 1.08011 * 120.03283 * 180.26916 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1633 -1.2096 0.0005 5 6 1.4703 -2.4135 0.0016 6 6 2.1639 -3.6077 0.0027 7 6 3.5467 -3.6060 0.0032 8 6 4.3001 -4.9111 0.0050 9 16 4.6032 -5.4367 -1.7046 10 6 5.5035 -6.9978 -1.4981 11 6 5.8382 -7.5793 -2.8731 12 6 4.6536 -7.9330 -3.7351 13 1 4.2878 -7.2272 -4.4661 14 6 4.0405 -9.1599 -3.5942 15 7 4.4044 -9.9693 -2.6236 16 14 2.6931 -9.6724 -4.7821 17 1 3.2961 -10.3846 -5.9374 18 1 1.7383 -10.5739 -4.0886 19 1 1.9736 -8.4663 -5.2649 20 6 7.0917 -7.0545 -3.5761 21 6 7.0808 -8.4653 -2.9822 22 6 4.2398 -2.4093 0.0083 23 6 3.5524 -1.2115 0.0015 24 1 -0.3633 0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 2.3792 1.5833 -1.0277 28 1 1.6084 2.0283 0.5138 29 1 3.1500 1.1384 0.5138 30 1 0.3902 -2.4156 0.0013 31 1 1.6257 -4.5441 0.0039 32 1 3.7109 -5.6702 0.5194 33 1 5.2524 -4.7802 0.5190 34 1 4.8838 -7.7045 -0.9463 35 1 6.4257 -6.8152 -0.9463 36 1 4.0208 -10.8583 -2.5640 37 1 7.0596 -6.9651 -4.6620 38 1 7.6782 -6.2952 -3.0588 39 1 7.6602 -8.6334 -2.0744 40 1 7.0414 -9.3042 -3.6770 41 1 5.3198 -2.4115 0.0136 42 1 4.0943 -0.2772 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118538757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:20 Heat of formation + Delta-G solvation = 54.218028 kcal Electronic energy + Delta-G solvation = -19996.538346 eV Core-core repulsion = 17068.486327 eV Total energy + Delta-G solvation = -2928.052019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 6.10 seconds Orbital eigenvalues (eV) -39.59145 -36.55995 -36.45583 -31.87828 -31.66770 -31.09091 -28.30810 -27.71842 -26.92643 -25.24465 -23.72793 -22.26005 -21.06539 -20.40662 -19.12054 -17.43807 -16.19003 -15.90380 -15.26149 -15.19732 -14.90128 -14.56931 -14.10949 -14.09414 -13.75639 -13.51248 -13.31690 -13.02179 -12.84664 -12.47732 -12.23810 -12.17844 -12.08212 -11.71110 -11.60355 -11.07573 -10.96560 -10.80234 -10.67155 -10.43652 -10.17871 -9.76058 -9.54415 -9.09223 -8.77873 -8.75088 -8.38753 -7.94558 -7.18524 -6.65874 -5.99086 -4.03308 1.52855 1.59674 2.71634 3.01435 3.34511 3.41206 3.46439 3.65204 4.10521 4.47379 4.78526 4.80123 5.00400 5.06860 5.09817 5.17611 5.30604 5.36619 5.42479 5.43640 5.44624 5.48450 5.60619 5.76786 5.80165 6.00610 6.04598 6.17887 6.28022 6.34637 6.46776 6.52887 6.59403 6.79011 6.88070 6.90328 6.93335 7.11078 7.16662 7.45938 7.46841 7.53871 7.94518 8.46267 8.98177 9.62264 11.10276 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020834 B = 0.003428 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.604938 B = 8165.706133 C = 8942.970302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.642 5.642 3 C 0.095 3.905 4 C 0.207 3.793 5 C -0.196 4.196 6 C -0.054 4.054 7 C -0.111 4.111 8 C -0.056 4.056 9 S -0.237 6.237 10 C -0.031 4.031 11 C 0.058 3.942 12 C -0.482 4.482 13 H 0.062 0.938 14 C 0.072 3.928 15 N -0.882 5.882 16 Si 0.887 3.113 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.272 1.272 20 C -0.205 4.205 21 C -0.151 4.151 22 C -0.057 4.057 23 C -0.197 4.197 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.259 0.741 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 18.168 8.295 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.356 5.356 3 C -0.048 4.048 4 C 0.106 3.894 5 C -0.218 4.218 6 C -0.074 4.074 7 C -0.114 4.114 8 C -0.203 4.203 9 S -0.006 6.006 10 C -0.179 4.179 11 C 0.056 3.944 12 C -0.519 4.519 13 H 0.080 0.920 14 C -0.131 4.131 15 N -0.520 5.520 16 Si 0.715 3.285 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.196 1.196 20 C -0.243 4.243 21 C -0.191 4.191 22 C -0.078 4.078 23 C -0.219 4.219 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.139 0.861 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.672 18.663 7.485 20.643 hybrid contribution -0.333 -1.091 0.523 1.255 sum -5.006 17.572 8.008 19.949 Atomic orbital electron populations 1.21591 0.79772 1.02582 1.00887 1.46253 1.04820 1.03157 1.81344 1.21586 0.97208 0.84975 1.01020 1.17810 0.91242 0.85500 0.94825 1.20606 0.99389 0.90964 1.10813 1.20818 0.93396 0.97498 0.95723 1.19079 0.93421 0.93308 1.05639 1.22191 1.01777 0.97041 0.99310 1.87134 1.76854 1.29028 1.07618 1.23072 0.98701 0.94155 1.01963 1.18437 0.88456 0.96870 0.90638 1.20392 1.11984 1.00810 1.18763 0.91993 1.24929 0.96495 0.96810 0.94844 1.70016 1.44223 1.07797 1.29924 0.86655 0.82047 0.78615 0.81179 1.20782 1.21337 1.19625 1.23015 1.05194 0.96814 0.99266 1.22579 1.02995 0.92837 1.00671 1.20760 0.99477 0.91162 0.96363 1.20573 0.91953 0.98314 1.11084 0.93658 0.91840 0.91208 0.93566 0.91885 0.91338 0.86183 0.85829 0.90234 0.90688 0.89969 0.93681 0.93173 0.90349 0.91492 0.91952 0.89880 0.86078 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 10.19 59.85 0.61 1.36 16 2 N -0.64 -6.59 3.41 -187.55 -0.64 -7.23 16 3 C 0.10 0.73 10.19 59.85 0.61 1.34 16 4 C 0.21 2.63 6.55 -83.79 -0.55 2.08 16 5 C -0.20 -2.57 9.21 -39.38 -0.36 -2.93 16 6 C -0.05 -0.79 9.69 -39.61 -0.38 -1.17 16 7 C -0.11 -1.71 5.14 -104.59 -0.54 -2.24 16 8 C -0.06 -0.92 6.07 36.00 0.22 -0.70 16 9 S -0.24 -4.97 21.32 -107.50 -2.29 -7.26 16 10 C -0.03 -0.70 5.81 37.16 0.22 -0.48 16 11 C 0.06 1.43 1.37 -155.66 -0.21 1.22 16 12 C -0.48 -13.30 8.38 -34.44 -0.29 -13.59 16 13 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 14 C 0.07 1.98 5.39 -17.82 -0.10 1.89 16 15 N -0.88 -24.98 12.93 55.43 0.72 -24.26 16 16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.21 -4.60 9.96 -26.69 -0.27 -4.86 16 21 C -0.15 -3.56 9.45 -26.69 -0.25 -3.81 16 22 C -0.06 -0.79 9.69 -39.61 -0.38 -1.18 16 23 C -0.20 -2.49 9.21 -39.38 -0.36 -2.86 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.39 8.07 -51.93 -0.42 -0.03 16 26 H 0.07 0.56 6.20 -51.93 -0.32 0.24 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.36 8.07 -51.93 -0.42 -0.05 16 29 H 0.07 0.50 6.20 -51.93 -0.32 0.18 16 30 H 0.12 1.34 6.14 -52.48 -0.32 1.02 16 31 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.08 1.29 8.08 -51.92 -0.42 0.87 16 33 H 0.07 1.13 8.08 -51.92 -0.42 0.71 16 34 H 0.08 2.04 8.14 -51.92 -0.42 1.61 16 35 H 0.04 0.94 8.11 -51.92 -0.42 0.52 16 36 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 37 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 41 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 42 H 0.12 1.25 6.14 -52.48 -0.32 0.93 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -30.10 359.15 -10.60 -40.70 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.74 Total: 2.09 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -2.04 Total: -25.95 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.08 Total: -31.49 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -4.97 SS G_CDS: -2.29 Total: -7.26 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.10 -10.60 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118538757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.917 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.10 seconds