Wall clock time and date at job start Tue Mar 31 2020 07:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00268 * 2 1 4 4 C 1.39677 * 119.99958 * 179.97438 * 2 1 3 5 5 C 1.38914 * 120.07194 * 359.97438 * 4 2 1 6 6 C 1.38098 * 119.92231 * 180.02562 * 5 4 2 7 7 C 1.38287 * 120.07936 * 0.02562 * 6 5 4 8 8 C 1.50691 * 119.92739 * 179.97438 * 7 6 5 9 9 S 1.81408 * 109.47213 * 90.00320 * 8 7 6 10 10 C 1.81392 * 103.00033 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47237 * 179.97438 * 10 9 8 12 12 C 1.50705 * 115.55013 * 297.82508 * 11 10 9 13 13 H 1.07998 * 119.99773 * 95.15356 * 12 11 10 14 14 C 1.37877 * 119.99810 * 274.88017 * 12 11 10 15 15 N 1.31515 * 119.99919 * 6.56582 * 14 12 11 16 16 Si 1.86794 * 119.99692 * 186.57166 * 14 12 11 17 17 H 1.48503 * 109.47493 * 90.00104 * 16 14 12 18 18 H 1.48507 * 109.47003 * 209.99621 * 16 14 12 19 19 H 1.48504 * 109.47373 * 329.99664 * 16 14 12 20 20 C 1.53001 * 117.49942 * 83.49065 * 11 10 9 21 21 C 1.53001 * 117.50182 * 152.15097 * 11 10 9 22 22 C 1.38287 * 120.14556 * 0.26776 * 7 6 5 23 23 C 1.38107 * 120.07174 * 359.45838 * 22 7 6 24 24 H 1.09004 * 109.47035 * 270.00323 * 1 2 3 25 25 H 1.09000 * 109.47339 * 29.99911 * 1 2 3 26 26 H 1.08997 * 109.47606 * 149.99794 * 1 2 3 27 27 H 1.08999 * 109.46872 * 270.00128 * 3 2 1 28 28 H 1.08996 * 109.46681 * 29.99800 * 3 2 1 29 29 H 1.09000 * 109.47293 * 150.00174 * 3 2 1 30 30 H 1.08005 * 120.03582 * 0.04645 * 5 4 2 31 31 H 1.08001 * 119.96286 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47625 * 330.00090 * 8 7 6 33 33 H 1.09000 * 109.47156 * 209.99948 * 8 7 6 34 34 H 1.08998 * 109.47687 * 60.00144 * 10 9 8 35 35 H 1.09003 * 109.47466 * 299.99497 * 10 9 8 36 36 H 0.97004 * 119.99783 * 184.58326 * 15 14 12 37 37 H 1.09003 * 117.50287 * 215.00334 * 20 11 10 38 38 H 1.09001 * 117.49614 * 0.02754 * 20 11 10 39 39 H 1.08993 * 117.49862 * 359.97438 * 21 11 10 40 40 H 1.09004 * 117.49936 * 144.97194 * 21 11 10 41 41 H 1.08005 * 119.96151 * 179.69981 * 22 7 6 42 42 H 1.08011 * 120.03283 * 180.26916 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1633 -1.2096 0.0005 5 6 1.4703 -2.4135 0.0016 6 6 2.1639 -3.6077 0.0027 7 6 3.5467 -3.6060 0.0032 8 6 4.3001 -4.9111 0.0050 9 16 4.6032 -5.4367 -1.7046 10 6 5.5035 -6.9978 -1.4981 11 6 5.8382 -7.5793 -2.8731 12 6 4.6536 -7.9330 -3.7351 13 1 4.2878 -7.2272 -4.4661 14 6 4.0405 -9.1599 -3.5942 15 7 4.4044 -9.9693 -2.6236 16 14 2.6931 -9.6724 -4.7821 17 1 3.2961 -10.3846 -5.9374 18 1 1.7383 -10.5739 -4.0886 19 1 1.9736 -8.4663 -5.2649 20 6 7.0917 -7.0545 -3.5761 21 6 7.0808 -8.4653 -2.9822 22 6 4.2398 -2.4093 0.0083 23 6 3.5524 -1.2115 0.0015 24 1 -0.3633 0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 2.3792 1.5833 -1.0277 28 1 1.6084 2.0283 0.5138 29 1 3.1500 1.1384 0.5138 30 1 0.3902 -2.4156 0.0013 31 1 1.6257 -4.5441 0.0039 32 1 3.7109 -5.6702 0.5194 33 1 5.2524 -4.7802 0.5190 34 1 4.8838 -7.7045 -0.9463 35 1 6.4257 -6.8152 -0.9463 36 1 4.0208 -10.8583 -2.5640 37 1 7.0596 -6.9651 -4.6620 38 1 7.6782 -6.2952 -3.0588 39 1 7.6602 -8.6334 -2.0744 40 1 7.0414 -9.3042 -3.6770 41 1 5.3198 -2.4115 0.0136 42 1 4.0943 -0.2772 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118538757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:12 Heat of formation + Delta-G solvation = 40.910353 kcal Electronic energy + Delta-G solvation = -19997.115410 eV Core-core repulsion = 17068.486327 eV Total energy + Delta-G solvation = -2928.629084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.85 seconds Orbital eigenvalues (eV) -40.55122 -38.39173 -37.38813 -33.97598 -32.72083 -32.06077 -29.45188 -28.97750 -28.07747 -27.28442 -24.64279 -23.25353 -22.91295 -21.46767 -20.98049 -18.39957 -18.05254 -16.81386 -16.80297 -16.57638 -16.07087 -15.89636 -15.66883 -15.13803 -15.08371 -14.98180 -14.57899 -14.43292 -13.96796 -13.57663 -13.40245 -13.29656 -13.06470 -12.94844 -12.88468 -12.81254 -12.77907 -12.45660 -12.26206 -12.01029 -11.63638 -11.46672 -11.07566 -10.71807 -10.48158 -10.33236 -9.81356 -9.80986 -8.32195 -8.10039 -8.09082 -6.18457 0.35118 0.57060 1.30661 1.40724 1.42668 1.52414 2.06276 2.27649 2.45278 3.04404 3.19773 3.55464 3.87381 3.93569 4.07097 4.19186 4.23689 4.27477 4.45020 4.49524 4.51627 4.55725 4.63986 4.65073 4.68638 4.71560 4.83783 4.89972 4.92225 4.95206 4.97677 5.01600 5.19349 5.24093 5.37172 5.49571 5.61430 5.63858 5.79879 5.82437 5.93289 6.38749 6.41422 6.56567 6.85033 7.48920 8.99233 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020834 B = 0.003428 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.604938 B = 8165.706133 C = 8942.970302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.645 5.645 3 C 0.088 3.912 4 C 0.207 3.793 5 C -0.205 4.205 6 C -0.066 4.066 7 C -0.138 4.138 8 C -0.035 4.035 9 S -0.276 6.276 10 C -0.019 4.019 11 C 0.029 3.971 12 C -0.494 4.494 13 H 0.045 0.955 14 C 0.030 3.970 15 N -0.906 5.906 16 Si 0.942 3.058 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.184 4.184 21 C -0.152 4.152 22 C -0.060 4.060 23 C -0.202 4.202 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.136 0.864 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.259 0.741 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.132 0.868 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.569 20.449 8.744 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.357 5.357 3 C -0.054 4.054 4 C 0.104 3.896 5 C -0.227 4.227 6 C -0.086 4.086 7 C -0.141 4.141 8 C -0.182 4.182 9 S -0.045 6.045 10 C -0.167 4.167 11 C 0.028 3.972 12 C -0.532 4.532 13 H 0.063 0.937 14 C -0.171 4.171 15 N -0.544 5.544 16 Si 0.768 3.232 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.221 4.221 21 C -0.192 4.192 22 C -0.080 4.080 23 C -0.224 4.224 24 H 0.073 0.927 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.153 0.847 31 H 0.137 0.863 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.150 0.850 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.051 20.964 7.923 22.974 hybrid contribution -0.298 -1.611 0.429 1.694 sum -5.348 19.353 8.352 21.746 Atomic orbital electron populations 1.21768 0.78509 1.03406 1.01758 1.46577 1.05897 1.03116 1.80091 1.21785 0.97660 0.84282 1.01672 1.18013 0.91604 0.86397 0.93573 1.20781 1.00270 0.90763 1.10890 1.20911 0.93456 0.98083 0.96182 1.19048 0.93696 0.93067 1.08278 1.22152 1.02775 0.97641 0.95639 1.87139 1.76966 1.27787 1.12614 1.22785 0.99091 0.94340 1.00508 1.18543 0.88370 0.98577 0.91709 1.20549 1.13107 1.00683 1.18858 0.93713 1.25546 0.98372 0.96921 0.96215 1.70099 1.45368 1.07965 1.30970 0.85794 0.79752 0.78084 0.79525 1.20102 1.20927 1.19791 1.22998 1.03450 0.96453 0.99194 1.22507 1.02858 0.92803 1.01013 1.20935 1.00132 0.91106 0.95833 1.20825 0.92211 0.98781 1.10624 0.92701 0.89810 0.91660 0.93174 0.89676 0.90981 0.84662 0.86312 0.90534 0.89111 0.92901 0.91899 0.93192 0.90580 0.89104 0.90430 0.91945 0.85039 0.84055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.16 10.19 127.77 1.30 2.46 16 2 N -0.65 -11.49 3.41 -747.29 -2.55 -14.04 16 3 C 0.09 1.08 10.19 127.77 1.30 2.38 16 4 C 0.21 4.86 6.55 38.21 0.25 5.11 16 5 C -0.20 -5.15 9.21 22.40 0.21 -4.94 16 6 C -0.07 -1.91 9.69 22.25 0.22 -1.69 16 7 C -0.14 -4.14 5.14 -19.84 -0.10 -4.24 16 8 C -0.03 -1.14 6.07 71.23 0.43 -0.71 16 9 S -0.28 -11.61 21.32 -56.49 -1.20 -12.82 16 10 C -0.02 -0.87 5.81 71.98 0.42 -0.45 16 11 C 0.03 1.47 1.37 -52.93 -0.07 1.40 16 12 C -0.49 -27.75 8.38 25.60 0.21 -27.54 16 13 H 0.04 2.60 7.82 -2.91 -0.02 2.58 16 14 C 0.03 1.65 5.39 84.65 0.46 2.11 16 15 N -0.91 -52.09 12.93 21.45 0.28 -51.81 16 16 Si 0.94 44.70 29.54 68.60 2.03 46.72 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 20 C -0.18 -8.07 9.96 30.62 0.30 -7.76 16 21 C -0.15 -7.16 9.45 30.62 0.29 -6.87 16 22 C -0.06 -1.57 9.69 22.25 0.22 -1.36 16 23 C -0.20 -4.71 9.21 22.40 0.21 -4.50 16 24 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.08 0.77 8.07 -2.39 -0.02 0.75 16 26 H 0.06 0.92 6.20 -2.39 -0.01 0.91 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.08 0.68 8.07 -2.39 -0.02 0.66 16 29 H 0.07 0.83 6.20 -2.39 -0.01 0.82 16 30 H 0.14 2.86 6.14 -2.91 -0.02 2.84 16 31 H 0.12 3.42 8.06 -2.91 -0.02 3.40 16 32 H 0.08 2.52 8.08 -2.39 -0.02 2.50 16 33 H 0.09 2.65 8.08 -2.39 -0.02 2.63 16 34 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.06 2.59 8.11 -2.39 -0.02 2.57 16 36 H 0.26 14.26 8.32 -92.71 -0.77 13.49 16 37 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 39 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 40 H 0.06 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 42 H 0.14 2.58 6.14 -2.91 -0.02 2.56 16 Total: -1.00 -64.44 359.15 5.17 -59.27 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.98 Total: 19.28 kcal Atomic # 6 Polarization: -52.24 SS G_CDS: 5.64 Total: -46.61 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -2.27 Total: -65.85 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -11.61 SS G_CDS: -1.20 Total: -12.82 kcal Total: -64.44 5.17 -59.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118538757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.178 kcal (2) G-P(sol) polarization free energy of solvation -64.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.85 seconds