Wall clock time and date at job start Tue Mar 31 2020 06:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47139 * 2 1 4 4 C 1.50695 * 109.47403 * 239.99884 * 2 1 3 5 5 H 1.08001 * 120.00313 * 240.00235 * 4 2 1 6 6 C 1.37876 * 120.00047 * 60.00019 * 4 2 1 7 7 N 1.31514 * 119.99900 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00206 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46905 * 89.99545 * 8 6 4 10 10 H 1.48498 * 109.47176 * 209.99501 * 8 6 4 11 11 H 1.48497 * 109.46811 * 330.00276 * 8 6 4 12 12 N 1.46901 * 109.47236 * 119.99556 * 2 1 3 13 13 C 1.46902 * 111.00040 * 176.04530 * 12 2 1 14 14 C 1.46899 * 111.00103 * 300.00352 * 12 2 1 15 15 C 1.50703 * 109.47107 * 169.99758 * 14 12 2 16 16 N 1.31262 * 126.19970 * 90.02247 * 15 14 12 17 17 N 1.28807 * 110.03441 * 179.97438 * 16 15 14 18 18 C 1.31385 * 109.26312 * 0.02562 * 17 16 15 19 19 C 1.46894 * 134.26423 * 179.97438 * 18 17 16 20 20 O 1.21738 * 120.78682 * 359.97438 * 19 18 17 21 21 N 1.35164 * 118.42518 * 179.33914 * 19 18 17 22 22 C 1.46498 * 119.84986 * 180.19273 * 21 19 18 23 23 C 1.38146 * 120.28835 * 0.53467 * 21 19 18 24 24 C 1.32808 * 121.84734 * 359.65768 * 23 21 19 25 25 N 1.34482 * 126.19841 * 269.70980 * 15 14 12 26 26 H 1.09004 * 109.47377 * 299.99963 * 1 2 3 27 27 H 1.08998 * 109.47071 * 60.00224 * 1 2 3 28 28 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 29 29 H 0.97002 * 120.00302 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46528 * 183.95480 * 13 12 2 31 31 H 1.09000 * 109.46785 * 303.95569 * 13 12 2 32 32 H 1.08997 * 109.47044 * 63.96124 * 13 12 2 33 33 H 1.09002 * 109.47043 * 289.99738 * 14 12 2 34 34 H 1.09001 * 109.47354 * 49.99799 * 14 12 2 35 35 H 1.08994 * 109.46846 * 180.34770 * 22 21 19 36 36 H 1.09004 * 109.47096 * 300.34098 * 22 21 19 37 37 H 1.08994 * 109.47713 * 60.34382 * 22 21 19 38 38 H 1.07999 * 119.07386 * 179.62851 * 23 21 19 39 39 H 1.08002 * 119.45560 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6160 16 7 2.9569 -0.8581 4.3330 17 7 2.8924 -1.7293 5.2796 18 6 1.7429 -2.3618 5.2089 19 6 1.1120 -3.4325 5.9922 20 8 1.6843 -3.9268 6.9461 21 7 -0.1245 -3.8467 5.6365 22 6 -0.7847 -4.9095 6.3986 23 6 -0.7654 -3.2772 4.5533 24 6 -0.2038 -2.3115 3.8350 25 7 1.0556 -1.8321 4.1443 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7090 1.1614 -3.4844 30 1 3.8163 -1.3720 2.0501 31 1 3.8069 -1.2915 0.2719 32 1 3.9192 0.2044 1.2301 33 1 2.0518 0.9347 2.5280 34 1 0.4722 0.1325 2.3564 35 1 -1.7639 -5.1126 5.9653 36 1 -0.1769 -5.8137 6.3626 37 1 -0.9044 -4.5932 7.4347 38 1 -1.7506 -3.6273 4.2828 39 1 -0.7397 -1.8940 2.9954 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119306004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:45 Heat of formation + Delta-G solvation = 94.404999 kcal Electronic energy + Delta-G solvation = -23427.320714 eV Core-core repulsion = 19987.010869 eV Total energy + Delta-G solvation = -3440.309845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.60846 -40.49268 -37.59078 -37.22891 -35.01828 -33.18564 -31.49521 -30.49136 -29.29079 -28.20979 -27.23298 -24.92125 -24.29581 -23.94582 -23.28610 -21.16912 -19.70643 -18.93153 -18.54867 -17.08881 -17.01212 -16.40641 -15.87205 -15.65614 -15.20985 -14.60691 -14.26429 -14.13162 -13.94330 -13.63886 -13.46403 -12.88311 -12.66745 -12.51540 -12.44890 -11.99938 -11.75035 -11.32873 -11.13292 -10.99279 -10.92176 -10.79349 -10.74860 -10.52296 -10.32484 -10.17314 -10.01134 -9.38293 -9.03264 -8.52925 -8.30990 -7.44662 -6.12151 -4.16810 0.80315 1.19800 2.01940 2.23627 2.64328 3.12181 3.24904 3.32059 3.35734 3.68367 4.12478 4.32875 4.41892 4.55208 4.66572 4.82969 4.91915 5.03059 5.21018 5.21664 5.23301 5.42929 5.66365 5.81120 5.86463 6.03782 6.17325 6.37391 6.42669 6.61435 6.76399 6.82900 6.86185 6.96600 7.32045 7.36792 7.49229 7.70690 7.97564 8.14594 8.39315 8.49878 8.88691 9.48756 10.94726 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024694 B = 0.003933 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.592360 B = 7117.280501 C = 7504.703274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.213 3.787 3 H 0.005 0.995 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.533 5.533 13 C 0.034 3.966 14 C 0.124 3.876 15 C 0.237 3.763 16 N -0.278 5.278 17 N -0.210 5.210 18 C 0.090 3.910 19 C 0.598 3.402 20 O -0.489 6.489 21 N -0.536 5.536 22 C 0.081 3.919 23 C 0.075 3.925 24 C -0.005 4.005 25 N -0.382 5.382 26 H 0.008 0.992 27 H 0.089 0.911 28 H 0.035 0.965 29 H 0.262 0.738 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.020 0.980 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.186 0.814 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.086 -7.282 12.749 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.108 3.892 3 H 0.023 0.977 4 C -0.544 4.544 5 H 0.083 0.917 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.259 5.259 13 C -0.114 4.114 14 C -0.006 4.006 15 C -0.028 4.028 16 N -0.122 5.122 17 N -0.056 5.056 18 C -0.171 4.171 19 C 0.385 3.615 20 O -0.359 6.359 21 N -0.259 5.259 22 C -0.060 4.060 23 C -0.045 4.045 24 C -0.124 4.124 25 N -0.068 5.068 26 H 0.026 0.974 27 H 0.108 0.892 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.203 0.797 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.630 -7.542 13.683 17.388 hybrid contribution -0.679 0.014 -1.466 1.616 sum -8.309 -7.528 12.217 16.582 Atomic orbital electron populations 1.21909 0.97673 0.99666 1.00128 1.19314 0.92307 0.92409 0.85220 0.97709 1.21093 1.31323 1.12455 0.89484 0.91747 1.24904 0.95105 0.95006 0.99020 1.69870 1.36798 1.22856 1.23623 0.86501 0.79296 0.79283 0.82369 1.20664 1.21253 1.19875 1.62232 1.10716 1.52065 1.00869 1.22285 0.87484 0.99695 1.01923 1.20666 1.02344 0.92537 0.85094 1.25158 0.87215 0.91997 0.98474 1.74848 1.17747 1.16477 1.03160 1.74569 1.12867 1.03189 1.14985 1.24479 0.94316 1.03548 0.94803 1.16445 0.80420 0.81102 0.83512 1.90917 1.62373 1.56048 1.26580 1.45297 1.15638 1.36348 1.28587 1.22007 0.97940 0.89261 0.96776 1.21409 0.99317 0.95191 0.88538 1.21125 0.85528 1.01204 1.04527 1.43536 1.14209 1.26596 1.22487 0.97363 0.89236 0.94560 0.92849 0.93430 0.90136 0.96150 0.91373 0.88333 0.88937 0.90365 0.90394 0.79717 0.79634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.76 37.16 0.33 -2.56 16 2 C 0.21 4.92 2.06 -68.87 -0.14 4.77 16 3 H 0.01 0.13 8.14 -51.92 -0.42 -0.29 16 4 C -0.51 -12.99 7.88 -34.44 -0.27 -13.26 16 5 H 0.06 1.68 6.41 -52.49 -0.34 1.34 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -23.98 11.32 55.43 0.63 -23.35 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 12 N -0.53 -10.70 4.61 -237.73 -1.10 -11.80 16 13 C 0.03 0.69 9.09 60.07 0.55 1.24 16 14 C 0.12 2.10 5.31 -4.98 -0.03 2.08 16 15 C 0.24 4.05 6.73 -155.28 -1.05 3.00 16 16 N -0.28 -5.34 11.52 32.73 0.38 -4.96 16 17 N -0.21 -4.07 12.28 32.34 0.40 -3.67 16 18 C 0.09 1.52 8.12 -154.30 -1.25 0.27 16 19 C 0.60 8.72 7.67 -12.58 -0.10 8.62 16 20 O -0.49 -8.29 17.20 5.16 0.09 -8.20 16 21 N -0.54 -5.20 3.06 -124.91 -0.38 -5.58 16 22 C 0.08 0.46 10.15 59.85 0.61 1.07 16 23 C 0.07 0.56 10.25 -16.57 -0.17 0.39 16 24 C -0.01 -0.05 10.87 -16.52 -0.18 -0.23 16 25 N -0.38 -5.75 2.97 -58.39 -0.17 -5.92 16 26 H 0.01 0.14 6.20 -51.93 -0.32 -0.18 16 27 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.05 0.94 6.74 -51.93 -0.35 0.59 16 31 H 0.08 1.71 6.10 -51.93 -0.32 1.40 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 1.16 8.12 -51.93 -0.42 0.73 16 34 H 0.10 1.48 5.83 -51.93 -0.30 1.18 16 35 H 0.09 0.19 7.75 -51.93 -0.40 -0.21 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.19 0.47 7.85 -52.49 -0.41 0.06 16 39 H 0.19 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 324.16 15.07 4.89 4.89 Total: -1.00 -32.85 324.16 -6.95 -39.80 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -4.85 Total: -3.53 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -1.80 Total: 6.89 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.25 Total: -55.29 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.85 -6.95 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119306004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.203 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds