Wall clock time and date at job start Tue Mar 31 2020 06:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47139 * 2 1 4 4 C 1.50695 * 109.47403 * 239.99884 * 2 1 3 5 5 H 1.08001 * 120.00313 * 240.00235 * 4 2 1 6 6 C 1.37876 * 120.00047 * 60.00019 * 4 2 1 7 7 N 1.31514 * 119.99900 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00206 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46905 * 89.99545 * 8 6 4 10 10 H 1.48498 * 109.47176 * 209.99501 * 8 6 4 11 11 H 1.48497 * 109.46811 * 330.00276 * 8 6 4 12 12 N 1.46901 * 109.47236 * 119.99556 * 2 1 3 13 13 C 1.46902 * 111.00040 * 176.04530 * 12 2 1 14 14 C 1.46899 * 111.00103 * 300.00352 * 12 2 1 15 15 C 1.50703 * 109.47107 * 169.99758 * 14 12 2 16 16 N 1.31262 * 126.19970 * 90.02247 * 15 14 12 17 17 N 1.28807 * 110.03441 * 179.97438 * 16 15 14 18 18 C 1.31385 * 109.26312 * 0.02562 * 17 16 15 19 19 C 1.46894 * 134.26423 * 179.97438 * 18 17 16 20 20 O 1.21738 * 120.78682 * 359.97438 * 19 18 17 21 21 N 1.35164 * 118.42518 * 179.33914 * 19 18 17 22 22 C 1.46498 * 119.84986 * 180.19273 * 21 19 18 23 23 C 1.38146 * 120.28835 * 0.53467 * 21 19 18 24 24 C 1.32808 * 121.84734 * 359.65768 * 23 21 19 25 25 N 1.34482 * 126.19841 * 269.70980 * 15 14 12 26 26 H 1.09004 * 109.47377 * 299.99963 * 1 2 3 27 27 H 1.08998 * 109.47071 * 60.00224 * 1 2 3 28 28 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 29 29 H 0.97002 * 120.00302 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46528 * 183.95480 * 13 12 2 31 31 H 1.09000 * 109.46785 * 303.95569 * 13 12 2 32 32 H 1.08997 * 109.47044 * 63.96124 * 13 12 2 33 33 H 1.09002 * 109.47043 * 289.99738 * 14 12 2 34 34 H 1.09001 * 109.47354 * 49.99799 * 14 12 2 35 35 H 1.08994 * 109.46846 * 180.34770 * 22 21 19 36 36 H 1.09004 * 109.47096 * 300.34098 * 22 21 19 37 37 H 1.08994 * 109.47713 * 60.34382 * 22 21 19 38 38 H 1.07999 * 119.07386 * 179.62851 * 23 21 19 39 39 H 1.08002 * 119.45560 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6160 16 7 2.9569 -0.8581 4.3330 17 7 2.8924 -1.7293 5.2796 18 6 1.7429 -2.3618 5.2089 19 6 1.1120 -3.4325 5.9922 20 8 1.6843 -3.9268 6.9461 21 7 -0.1245 -3.8467 5.6365 22 6 -0.7847 -4.9095 6.3986 23 6 -0.7654 -3.2772 4.5533 24 6 -0.2038 -2.3115 3.8350 25 7 1.0556 -1.8321 4.1443 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7090 1.1614 -3.4844 30 1 3.8163 -1.3720 2.0501 31 1 3.8069 -1.2915 0.2719 32 1 3.9192 0.2044 1.2301 33 1 2.0518 0.9347 2.5280 34 1 0.4722 0.1325 2.3564 35 1 -1.7639 -5.1126 5.9653 36 1 -0.1769 -5.8137 6.3626 37 1 -0.9044 -4.5932 7.4347 38 1 -1.7506 -3.6273 4.2828 39 1 -0.7397 -1.8940 2.9954 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119306004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:44 Heat of formation + Delta-G solvation = 71.980980 kcal Electronic energy + Delta-G solvation = -23428.293092 eV Core-core repulsion = 19987.010869 eV Total energy + Delta-G solvation = -3441.282223 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.80514 -41.49622 -38.89001 -38.61413 -36.04808 -34.99573 -32.89190 -31.39777 -30.99175 -29.33884 -28.46096 -26.72848 -25.45631 -25.10490 -24.59888 -22.47004 -21.32407 -20.00240 -19.63915 -18.40138 -18.18801 -17.82239 -17.21392 -16.77978 -16.52923 -15.97495 -15.85573 -15.46476 -15.11869 -14.64706 -14.37912 -14.33147 -14.03338 -13.67734 -13.46594 -13.24122 -13.05025 -12.93973 -12.92545 -12.64027 -12.54941 -12.11428 -12.02446 -11.94060 -11.89541 -11.82167 -11.70716 -10.93345 -10.70990 -10.45903 -9.20210 -9.09743 -8.09840 -6.20143 -0.27864 0.19737 1.10988 1.17956 1.43018 1.44010 1.46918 1.55339 2.04748 2.44285 2.70787 3.01698 3.19277 3.33040 3.52656 3.65817 3.89646 4.22334 4.27171 4.39873 4.49006 4.49309 4.52762 4.59562 4.70278 4.80649 4.85455 4.96172 5.05334 5.08593 5.19169 5.22454 5.48445 5.53875 5.71575 5.77312 5.89362 6.23562 6.30913 6.36660 6.59328 6.91204 7.22277 7.48548 8.95646 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024694 B = 0.003933 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.592360 B = 7117.280501 C = 7504.703274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.217 3.783 3 H -0.027 1.027 4 C -0.519 4.519 5 H 0.055 0.945 6 C 0.020 3.980 7 N -0.915 5.915 8 Si 0.952 3.048 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.532 5.532 13 C 0.044 3.956 14 C 0.133 3.867 15 C 0.222 3.778 16 N -0.306 5.306 17 N -0.258 5.258 18 C 0.082 3.918 19 C 0.589 3.411 20 O -0.524 6.524 21 N -0.522 5.522 22 C 0.071 3.929 23 C 0.115 3.885 24 C -0.053 4.053 25 N -0.368 5.368 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.262 0.738 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.016 0.984 33 H 0.065 0.935 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.252 0.748 39 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.172 -9.006 12.821 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.111 3.889 3 H -0.010 1.010 4 C -0.558 4.558 5 H 0.073 0.927 6 C -0.179 4.179 7 N -0.554 5.554 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.257 5.257 13 C -0.104 4.104 14 C 0.003 3.997 15 C -0.044 4.044 16 N -0.150 5.150 17 N -0.105 5.105 18 C -0.182 4.182 19 C 0.376 3.624 20 O -0.398 6.398 21 N -0.242 5.242 22 C -0.068 4.068 23 C -0.004 4.004 24 C -0.169 4.169 25 N -0.053 5.053 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.083 0.917 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.268 0.732 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -10.767 -9.288 13.754 19.783 hybrid contribution 0.165 0.451 -1.395 1.476 sum -10.602 -8.837 12.358 18.526 Atomic orbital electron populations 1.21699 0.95883 1.00105 1.00448 1.19138 0.93616 0.90452 0.85708 1.00960 1.21348 1.31236 1.12297 0.90884 0.92689 1.25542 0.95363 0.95652 1.01393 1.69980 1.37569 1.23786 1.24079 0.85641 0.78727 0.78358 0.79387 1.19928 1.21154 1.20035 1.62124 1.10298 1.52061 1.01239 1.22138 0.87973 0.99238 1.01089 1.20623 1.03465 0.92053 0.83563 1.24904 0.87577 0.93195 0.98740 1.74703 1.19286 1.17218 1.03795 1.74446 1.15046 1.04740 1.16228 1.24921 0.94039 1.03788 0.95413 1.16523 0.81969 0.80774 0.83150 1.90891 1.63734 1.57157 1.28034 1.45578 1.13803 1.36087 1.28753 1.22442 0.99778 0.87552 0.96995 1.22468 1.00365 0.92167 0.85420 1.21879 0.84376 1.03557 1.07122 1.43673 1.15218 1.25222 1.21152 0.93947 0.91980 0.93896 0.92867 0.93241 0.91665 0.96568 0.91704 0.85961 0.83731 0.90734 0.90332 0.73202 0.77381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 8.76 71.98 0.63 -4.43 16 2 C 0.22 10.01 2.06 44.17 0.09 10.11 16 3 H -0.03 -1.41 8.14 -2.38 -0.02 -1.43 16 4 C -0.52 -26.83 7.88 25.60 0.20 -26.63 16 5 H 0.05 2.89 6.41 -2.91 -0.02 2.87 16 6 C 0.02 1.03 5.30 84.65 0.45 1.48 16 7 N -0.91 -49.25 11.32 21.45 0.24 -49.00 16 8 Si 0.95 41.85 29.54 68.60 2.03 43.88 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 12 N -0.53 -21.24 4.61 -906.03 -4.18 -25.42 16 13 C 0.04 1.83 9.09 127.69 1.16 2.99 16 14 C 0.13 4.41 5.31 85.56 0.45 4.87 16 15 C 0.22 7.57 6.73 138.08 0.93 8.50 16 16 N -0.31 -12.11 11.52 -50.36 -0.58 -12.69 16 17 N -0.26 -10.39 12.28 -51.58 -0.63 -11.03 16 18 C 0.08 2.74 8.12 135.97 1.10 3.85 16 19 C 0.59 16.55 7.67 86.45 0.66 17.21 16 20 O -0.52 -17.85 17.20 -4.47 -0.08 -17.92 16 21 N -0.52 -8.14 3.06 -667.07 -2.04 -10.18 16 22 C 0.07 0.49 10.15 127.77 1.30 1.79 16 23 C 0.11 1.10 10.25 82.52 0.85 1.95 16 24 C -0.05 -0.91 10.87 82.50 0.90 -0.01 16 25 N -0.37 -10.61 2.97 -338.65 -1.01 -11.62 16 26 H 0.04 1.41 6.20 -2.39 -0.01 1.39 16 27 H 0.06 2.93 6.07 -2.39 -0.01 2.92 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 30 H 0.05 2.01 6.74 -2.38 -0.02 1.99 16 31 H 0.06 2.85 6.10 -2.39 -0.01 2.84 16 32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 2.21 8.12 -2.39 -0.02 2.19 16 34 H 0.12 3.40 5.83 -2.39 -0.01 3.38 16 35 H 0.14 -0.46 7.75 -2.39 -0.02 -0.48 16 36 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 38 H 0.25 -0.89 7.85 -2.91 -0.02 -0.91 16 39 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -76.31 324.16 3.55 -72.76 By element: Atomic # 1 Polarization: -1.53 SS G_CDS: 1.08 Total: -0.45 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 8.72 Total: 21.67 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -8.20 Total: -119.94 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.08 Total: -17.92 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -76.31 3.55 -72.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119306004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.744 kcal (2) G-P(sol) polarization free energy of solvation -76.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds