Wall clock time and date at job start Tue Mar 31 2020 06:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47247 * 89.99769 * 8 6 4 10 10 H 1.48496 * 109.47178 * 209.99766 * 8 6 4 11 11 H 1.48504 * 109.47095 * 329.99574 * 8 6 4 12 12 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 13 13 C 1.46907 * 110.99846 * 306.04564 * 12 2 1 14 14 C 1.46894 * 111.00206 * 70.00284 * 12 2 1 15 15 C 1.50700 * 109.47269 * 169.99805 * 14 12 2 16 16 N 1.31256 * 126.20246 * 269.69043 * 15 14 12 17 17 N 1.28805 * 110.04347 * 179.85834 * 16 15 14 18 18 C 1.31396 * 109.25477 * 0.40741 * 17 16 15 19 19 C 1.46889 * 134.26648 * 179.71609 * 18 17 16 20 20 O 1.21741 * 120.78677 * 0.05911 * 19 18 17 21 21 N 1.35153 * 118.42858 * 180.02562 * 19 18 17 22 22 C 1.46496 * 119.85380 * 180.02562 * 21 19 18 23 23 C 1.38152 * 120.28883 * 359.97438 * 21 19 18 24 24 C 1.32811 * 121.84686 * 359.97438 * 23 21 19 25 25 N 1.34469 * 126.19761 * 90.00019 * 15 14 12 26 26 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 29 29 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.46867 * 60.00675 * 13 12 2 31 31 H 1.08998 * 109.46750 * 180.02562 * 13 12 2 32 32 H 1.08994 * 109.46944 * 299.99912 * 13 12 2 33 33 H 1.08998 * 109.46955 * 290.00099 * 14 12 2 34 34 H 1.08998 * 109.47049 * 49.99909 * 14 12 2 35 35 H 1.09005 * 109.47432 * 89.99478 * 22 21 19 36 36 H 1.09000 * 109.47298 * 209.99393 * 22 21 19 37 37 H 1.08997 * 109.47109 * 329.99566 * 22 21 19 38 38 H 1.08006 * 119.07041 * 180.02562 * 23 21 19 39 39 H 1.07999 * 119.45231 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5440 4.4120 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7530 0.0972 -2.4090 15 6 2.4775 -0.5163 -3.5794 16 7 3.6938 -0.2248 -3.9775 17 7 4.0042 -0.9361 -5.0055 18 6 2.9909 -1.7123 -5.3173 19 6 2.7502 -2.7125 -6.3658 20 8 3.6077 -2.9690 -7.1910 21 7 1.5544 -3.3420 -6.3922 22 6 1.2812 -4.3455 -7.4239 23 6 0.5891 -3.0439 -5.4499 24 6 0.7951 -2.1424 -4.4966 25 7 1.9929 -1.4576 -4.4085 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7094 1.1619 3.4844 30 1 0.3490 -1.9549 -1.3694 31 1 1.8140 -2.5261 -2.2040 32 1 1.7059 -2.6221 -0.4301 33 1 0.6815 0.1053 -2.6087 34 1 2.1026 1.1188 -2.2603 35 1 1.5863 -5.3284 -7.0647 36 1 0.2145 -4.3555 -7.6477 37 1 1.8396 -4.0993 -8.3271 38 1 -0.3593 -3.5591 -5.4892 39 1 0.0132 -1.9393 -3.7799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119306006.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:51 Heat of formation + Delta-G solvation = 96.585491 kcal Electronic energy + Delta-G solvation = -23491.960560 eV Core-core repulsion = 20051.745269 eV Total energy + Delta-G solvation = -3440.215292 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.65815 -40.54615 -37.74777 -37.40551 -35.06095 -33.15077 -31.58492 -30.55791 -28.95679 -28.19888 -26.96437 -25.36113 -24.43169 -24.12493 -23.66534 -21.13846 -19.58505 -18.95080 -18.56913 -17.15989 -17.12886 -16.33236 -15.86869 -15.78806 -15.14278 -14.72512 -14.39768 -14.27042 -13.79302 -13.68714 -13.52423 -13.04230 -12.83073 -12.58916 -12.53020 -11.76599 -11.70680 -11.39128 -11.26879 -11.00470 -10.92059 -10.87326 -10.81150 -10.64318 -10.52513 -10.18429 -10.02732 -9.39256 -9.03399 -8.46295 -8.40046 -7.43893 -6.09239 -4.13091 0.74282 1.12664 1.96013 2.17234 2.62527 3.08682 3.28208 3.34921 3.37912 3.61765 4.06493 4.33472 4.36900 4.47919 4.62072 4.80745 4.85561 4.93477 5.12464 5.17999 5.23734 5.40347 5.59892 5.77182 5.81352 5.89848 5.92726 6.07638 6.36721 6.44873 6.59805 6.68307 6.80052 6.90888 7.22027 7.31699 7.52829 7.70990 7.93583 8.19075 8.40023 8.51483 8.91900 9.52353 10.97920 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028727 B = 0.003754 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.443886 B = 7457.429856 C = 7656.820401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.213 3.787 3 H 0.046 0.954 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.524 5.524 13 C 0.030 3.970 14 C 0.132 3.868 15 C 0.236 3.764 16 N -0.263 5.263 17 N -0.208 5.208 18 C 0.090 3.910 19 C 0.599 3.401 20 O -0.488 6.488 21 N -0.537 5.537 22 C 0.076 3.924 23 C 0.081 3.919 24 C -0.015 4.015 25 N -0.392 5.392 26 H 0.007 0.993 27 H 0.033 0.967 28 H 0.092 0.908 29 H 0.261 0.739 30 H 0.024 0.976 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.185 0.815 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 -8.688 -16.384 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.108 3.892 3 H 0.064 0.936 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.249 5.249 13 C -0.119 4.119 14 C 0.001 3.999 15 C -0.029 4.029 16 N -0.107 5.107 17 N -0.054 5.054 18 C -0.172 4.172 19 C 0.386 3.614 20 O -0.358 6.358 21 N -0.259 5.259 22 C -0.065 4.065 23 C -0.039 4.039 24 C -0.133 4.133 25 N -0.079 5.079 26 H 0.026 0.974 27 H 0.052 0.948 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.202 0.798 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.714 -8.132 -16.773 19.496 hybrid contribution -1.938 -0.974 1.000 2.389 sum -7.652 -9.106 -15.773 19.755 Atomic orbital electron populations 1.22446 1.00531 0.99534 1.00826 1.19393 0.89875 0.94823 0.85154 0.93626 1.21037 1.30775 1.12698 0.89363 0.91890 1.24898 0.95099 0.95110 0.99002 1.69861 1.36905 1.22943 1.23607 0.86493 0.78625 0.79947 0.82318 1.20558 1.21352 1.19981 1.62378 1.59131 1.02276 1.01118 1.22372 0.96349 0.91922 1.01235 1.20587 0.95389 0.98406 0.85474 1.25210 0.92666 0.90091 0.94952 1.74872 1.09375 1.19863 1.06541 1.74631 1.19944 1.03173 1.07632 1.24470 0.89230 1.05769 0.97688 1.16468 0.81932 0.79828 0.83167 1.90920 1.43009 1.63404 1.38425 1.45282 1.13062 1.38474 1.29105 1.22045 1.03033 0.90485 0.90914 1.21347 0.95008 0.98056 0.89499 1.21042 0.89401 0.99254 1.03649 1.43695 1.12877 1.28717 1.22594 0.97410 0.94807 0.88928 0.92874 0.95791 0.94688 0.90189 0.93053 0.87064 0.90742 0.89392 0.89039 0.79763 0.80152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 8.22 37.16 0.31 -3.42 16 2 C 0.21 4.93 2.31 -68.86 -0.16 4.77 16 3 H 0.05 1.17 7.93 -51.93 -0.41 0.75 16 4 C -0.50 -13.02 7.97 -34.44 -0.27 -13.30 16 5 H 0.06 1.67 7.10 -52.49 -0.37 1.30 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 8 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.52 -10.47 4.69 -237.73 -1.12 -11.59 16 13 C 0.03 0.52 8.18 60.07 0.49 1.01 16 14 C 0.13 2.21 5.06 -4.98 -0.03 2.19 16 15 C 0.24 4.02 6.72 -155.30 -1.04 2.97 16 16 N -0.26 -5.20 12.23 32.73 0.40 -4.80 16 17 N -0.21 -4.07 12.29 32.35 0.40 -3.67 16 18 C 0.09 1.49 8.12 -154.29 -1.25 0.24 16 19 C 0.60 8.49 7.66 -12.59 -0.10 8.40 16 20 O -0.49 -8.10 16.79 5.15 0.09 -8.02 16 21 N -0.54 -4.91 3.06 -124.90 -0.38 -5.29 16 22 C 0.08 0.40 10.42 59.84 0.62 1.02 16 23 C 0.08 0.55 10.24 -16.57 -0.17 0.38 16 24 C -0.01 -0.14 9.41 -16.51 -0.16 -0.30 16 25 N -0.39 -5.67 2.54 -58.39 -0.15 -5.82 16 26 H 0.01 0.13 6.91 -51.93 -0.36 -0.23 16 27 H 0.03 0.69 6.33 -51.93 -0.33 0.36 16 28 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 29 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.02 0.38 6.21 -51.93 -0.32 0.05 16 31 H 0.03 0.56 5.62 -51.93 -0.29 0.27 16 32 H 0.08 1.56 6.86 -51.93 -0.36 1.20 16 33 H 0.05 0.75 7.06 -51.93 -0.37 0.38 16 34 H 0.11 1.89 7.93 -51.93 -0.41 1.47 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.16 8.04 -51.93 -0.42 -0.26 16 37 H 0.09 0.58 7.45 -51.93 -0.39 0.19 16 38 H 0.19 0.33 8.05 -52.48 -0.42 -0.09 16 39 H 0.18 1.34 7.90 -52.49 -0.41 0.93 16 LS Contribution 319.31 15.07 4.81 4.81 Total: -1.00 -33.41 319.31 -6.93 -40.34 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -4.73 Total: -3.54 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -1.85 Total: 5.46 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.22 Total: -54.80 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.09 Total: -8.02 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.41 -6.93 -40.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119306006.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.923 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds