Wall clock time and date at job start Tue Mar 31 2020 06:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47247 * 89.99769 * 8 6 4 10 10 H 1.48496 * 109.47178 * 209.99766 * 8 6 4 11 11 H 1.48504 * 109.47095 * 329.99574 * 8 6 4 12 12 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 13 13 C 1.46907 * 110.99846 * 306.04564 * 12 2 1 14 14 C 1.46894 * 111.00206 * 70.00284 * 12 2 1 15 15 C 1.50700 * 109.47269 * 169.99805 * 14 12 2 16 16 N 1.31256 * 126.20246 * 269.69043 * 15 14 12 17 17 N 1.28805 * 110.04347 * 179.85834 * 16 15 14 18 18 C 1.31396 * 109.25477 * 0.40741 * 17 16 15 19 19 C 1.46889 * 134.26648 * 179.71609 * 18 17 16 20 20 O 1.21741 * 120.78677 * 0.05911 * 19 18 17 21 21 N 1.35153 * 118.42858 * 180.02562 * 19 18 17 22 22 C 1.46496 * 119.85380 * 180.02562 * 21 19 18 23 23 C 1.38152 * 120.28883 * 359.97438 * 21 19 18 24 24 C 1.32811 * 121.84686 * 359.97438 * 23 21 19 25 25 N 1.34469 * 126.19761 * 90.00019 * 15 14 12 26 26 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 29 29 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.46867 * 60.00675 * 13 12 2 31 31 H 1.08998 * 109.46750 * 180.02562 * 13 12 2 32 32 H 1.08994 * 109.46944 * 299.99912 * 13 12 2 33 33 H 1.08998 * 109.46955 * 290.00099 * 14 12 2 34 34 H 1.08998 * 109.47049 * 49.99909 * 14 12 2 35 35 H 1.09005 * 109.47432 * 89.99478 * 22 21 19 36 36 H 1.09000 * 109.47298 * 209.99393 * 22 21 19 37 37 H 1.08997 * 109.47109 * 329.99566 * 22 21 19 38 38 H 1.08006 * 119.07041 * 180.02562 * 23 21 19 39 39 H 1.07999 * 119.45231 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5440 4.4120 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7530 0.0972 -2.4090 15 6 2.4775 -0.5163 -3.5794 16 7 3.6938 -0.2248 -3.9775 17 7 4.0042 -0.9361 -5.0055 18 6 2.9909 -1.7123 -5.3173 19 6 2.7502 -2.7125 -6.3658 20 8 3.6077 -2.9690 -7.1910 21 7 1.5544 -3.3420 -6.3922 22 6 1.2812 -4.3455 -7.4239 23 6 0.5891 -3.0439 -5.4499 24 6 0.7951 -2.1424 -4.4966 25 7 1.9929 -1.4576 -4.4085 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7094 1.1619 3.4844 30 1 0.3490 -1.9549 -1.3694 31 1 1.8140 -2.5261 -2.2040 32 1 1.7059 -2.6221 -0.4301 33 1 0.6815 0.1053 -2.6087 34 1 2.1026 1.1188 -2.2603 35 1 1.5863 -5.3284 -7.0647 36 1 0.2145 -4.3555 -7.6477 37 1 1.8396 -4.0993 -8.3271 38 1 -0.3593 -3.5591 -5.4892 39 1 0.0132 -1.9393 -3.7799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119306006.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:50 Heat of formation + Delta-G solvation = 73.018315 kcal Electronic energy + Delta-G solvation = -23492.982510 eV Core-core repulsion = 20051.745269 eV Total energy + Delta-G solvation = -3441.237241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.83176 -41.51467 -39.12962 -38.60598 -36.07659 -34.93983 -32.98672 -31.42155 -30.54220 -29.22556 -28.14519 -27.23199 -25.77049 -25.20045 -24.72898 -22.42249 -21.12968 -20.00779 -19.63599 -18.32971 -18.25766 -17.83461 -17.10149 -16.88930 -16.55556 -16.00818 -15.88660 -15.39047 -15.08609 -14.64272 -14.45314 -14.38312 -14.13496 -13.53282 -13.45811 -13.27774 -13.03907 -12.95230 -12.84314 -12.62182 -12.57131 -12.36533 -12.05276 -11.94692 -11.86477 -11.83412 -11.73689 -10.96310 -10.68338 -10.46376 -9.21771 -8.94726 -8.09192 -6.18747 -0.29246 0.17083 1.08277 1.15584 1.43320 1.43817 1.46967 1.54610 2.02695 2.44735 2.69432 3.01943 3.20939 3.34983 3.45929 3.68211 3.86521 4.22218 4.24466 4.40322 4.45717 4.49864 4.51859 4.58169 4.67586 4.76046 4.84236 4.85859 4.95057 5.12461 5.12669 5.15131 5.46997 5.54229 5.72216 5.80993 5.87130 6.19373 6.35231 6.44396 6.62212 6.92196 7.25298 7.50060 8.96332 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028727 B = 0.003754 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.443886 B = 7457.429856 C = 7656.820401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.219 3.781 3 H 0.012 0.988 4 C -0.514 4.514 5 H 0.050 0.950 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.952 3.048 9 H -0.284 1.284 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.547 5.547 13 C 0.039 3.961 14 C 0.142 3.858 15 C 0.224 3.776 16 N -0.303 5.303 17 N -0.260 5.260 18 C 0.083 3.917 19 C 0.590 3.410 20 O -0.524 6.524 21 N -0.522 5.522 22 C 0.067 3.933 23 C 0.120 3.880 24 C -0.061 4.061 25 N -0.375 5.375 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.262 0.738 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.076 0.924 38 H 0.253 0.747 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.232 -11.083 -17.522 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.112 3.888 3 H 0.030 0.970 4 C -0.552 4.552 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.556 5.556 8 Si 0.779 3.221 9 H -0.210 1.210 10 H -0.207 1.207 11 H -0.195 1.195 12 N -0.272 5.272 13 C -0.109 4.109 14 C 0.012 3.988 15 C -0.043 4.043 16 N -0.146 5.146 17 N -0.107 5.107 18 C -0.181 4.181 19 C 0.377 3.623 20 O -0.398 6.398 21 N -0.242 5.242 22 C -0.072 4.072 23 C 0.001 3.999 24 C -0.177 4.177 25 N -0.060 5.060 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.155 0.845 37 H 0.095 0.905 38 H 0.269 0.731 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.938 -10.562 -17.925 22.644 hybrid contribution -1.033 -0.349 1.206 1.626 sum -9.971 -10.912 -16.719 22.316 Atomic orbital electron populations 1.22208 0.98864 1.00027 1.00750 1.19100 0.90982 0.92916 0.85754 0.96995 1.21300 1.30557 1.12441 0.90942 0.93169 1.25541 0.95400 0.95776 1.01384 1.69973 1.37706 1.23869 1.24019 0.85648 0.77877 0.79084 0.79522 1.20977 1.20704 1.19530 1.62123 1.60305 1.03444 1.01330 1.22282 0.97692 0.90204 1.00717 1.20476 0.96993 0.97284 0.84064 1.24972 0.92332 0.91365 0.95602 1.74715 1.11315 1.21215 1.07401 1.74490 1.22172 1.05216 1.08780 1.24926 0.89128 1.05587 0.98412 1.16525 0.83453 0.79932 0.82398 1.90895 1.44689 1.64622 1.39582 1.45563 1.11420 1.37477 1.29770 1.22469 1.05978 0.89563 0.89160 1.22434 0.95714 0.95494 0.86231 1.21853 0.88494 1.00897 1.06505 1.43792 1.13804 1.27557 1.20830 0.94430 0.93829 0.91969 0.92921 0.93338 0.93216 0.92650 0.89901 0.88201 0.89403 0.84450 0.90495 0.73110 0.77432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.60 8.22 71.98 0.59 -6.01 16 2 C 0.22 10.20 2.31 44.17 0.10 10.30 16 3 H 0.01 0.64 7.93 -2.39 -0.02 0.62 16 4 C -0.51 -27.09 7.97 25.60 0.20 -26.89 16 5 H 0.05 2.72 7.10 -2.91 -0.02 2.69 16 6 C 0.02 0.96 5.30 84.66 0.45 1.40 16 7 N -0.92 -50.19 11.32 21.45 0.24 -49.94 16 8 Si 0.95 42.76 29.54 68.60 2.03 44.78 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 N -0.55 -21.69 4.69 -906.05 -4.25 -25.94 16 13 C 0.04 1.30 8.18 127.69 1.04 2.34 16 14 C 0.14 4.67 5.06 85.56 0.43 5.10 16 15 C 0.22 7.62 6.72 138.09 0.93 8.55 16 16 N -0.30 -12.51 12.23 -50.38 -0.62 -13.13 16 17 N -0.26 -10.68 12.29 -51.58 -0.63 -11.32 16 18 C 0.08 2.74 8.12 135.97 1.10 3.85 16 19 C 0.59 16.07 7.66 86.45 0.66 16.74 16 20 O -0.52 -17.55 16.79 -4.48 -0.08 -17.62 16 21 N -0.52 -7.42 3.06 -667.07 -2.04 -9.46 16 22 C 0.07 0.38 10.42 127.77 1.33 1.71 16 23 C 0.12 0.92 10.24 82.52 0.84 1.76 16 24 C -0.06 -0.91 9.41 82.50 0.78 -0.13 16 25 N -0.37 -10.28 2.54 -338.66 -0.86 -11.14 16 26 H 0.04 1.29 6.91 -2.39 -0.02 1.28 16 27 H 0.04 1.68 6.33 -2.39 -0.02 1.67 16 28 H 0.06 3.00 6.07 -2.39 -0.01 2.98 16 29 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 30 H 0.05 1.36 6.21 -2.39 -0.01 1.34 16 31 H 0.05 1.49 5.62 -2.39 -0.01 1.47 16 32 H 0.05 2.11 6.86 -2.39 -0.02 2.09 16 33 H 0.08 2.17 7.06 -2.39 -0.02 2.15 16 34 H 0.10 3.47 7.93 -2.39 -0.02 3.45 16 35 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 36 H 0.14 -0.49 8.04 -2.39 -0.02 -0.51 16 37 H 0.08 0.75 7.45 -2.39 -0.02 0.73 16 38 H 0.25 -1.43 8.05 -2.91 -0.02 -1.45 16 39 H 0.21 1.91 7.90 -2.91 -0.02 1.88 16 Total: -1.00 -79.51 319.31 3.34 -76.17 By element: Atomic # 1 Polarization: -2.22 SS G_CDS: 1.08 Total: -1.14 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 8.47 Total: 18.73 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -8.16 Total: -120.93 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.08 Total: -17.62 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -79.51 3.34 -76.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119306006.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.190 kcal (2) G-P(sol) polarization free energy of solvation -79.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds