Wall clock time and date at job start Tue Mar 31 2020 08:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00611 * 2 1 4 4 H 1.48497 * 109.47277 * 270.00323 * 3 2 1 5 5 H 1.48501 * 109.46926 * 30.00141 * 3 2 1 6 6 H 1.48502 * 109.47324 * 150.00074 * 3 2 1 7 7 C 1.37886 * 119.99420 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00138 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99815 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46986 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46853 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99959 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99859 * 359.97438 * 12 11 10 14 14 C 1.50693 * 120.00083 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.47154 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47334 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47157 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.46986 * 180.02562 * 17 16 15 19 19 C 1.38289 * 119.96926 * 270.01927 * 18 17 16 20 20 C 1.38240 * 120.11036 * 180.02562 * 19 18 17 21 21 C 1.38173 * 120.05812 * 359.67646 * 20 19 18 22 22 C 1.38709 * 119.93675 * 0.57760 * 21 20 19 23 23 O 1.35905 * 120.05346 * 179.72475 * 22 21 20 24 24 C 1.38116 * 119.97322 * 89.99956 * 18 17 16 25 25 H 0.97004 * 119.99142 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46798 * 59.99583 * 9 7 2 27 27 H 1.09005 * 109.46531 * 300.00013 * 9 7 2 28 28 H 1.08997 * 109.47139 * 59.99751 * 10 9 7 29 29 H 1.09007 * 109.46745 * 299.99489 * 10 9 7 30 30 H 0.96999 * 120.00465 * 359.97438 * 11 10 9 31 31 H 1.08997 * 109.47272 * 60.00007 * 14 12 11 32 32 H 1.09002 * 109.47466 * 299.99690 * 14 12 11 33 33 H 1.09002 * 109.47204 * 59.99846 * 15 14 12 34 34 H 1.08995 * 109.47231 * 300.00077 * 15 14 12 35 35 H 1.09002 * 109.47179 * 59.99735 * 16 15 14 36 36 H 1.09007 * 109.46916 * 299.99776 * 16 15 14 37 37 H 1.09002 * 109.47572 * 59.99634 * 17 16 15 38 38 H 1.09000 * 109.47040 * 299.99288 * 17 16 15 39 39 H 1.08001 * 119.94341 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.97312 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.03009 * 180.29712 * 21 20 19 42 42 H 0.96705 * 113.99576 * 269.72355 * 23 22 21 43 43 H 1.08003 * 120.03068 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4399 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5115 -1.1943 0.0000 10 6 4.0214 -2.6368 -0.0014 11 7 5.4864 -2.6369 -0.0014 12 6 6.1602 -3.8041 -0.0020 13 8 5.5537 -4.8544 -0.0021 14 6 7.6671 -3.8042 -0.0027 15 6 8.1770 -5.2468 -0.0027 16 6 9.7071 -5.2469 -0.0027 17 6 10.2169 -6.6894 -0.0033 18 6 11.7240 -6.6895 -0.0027 19 6 12.4153 -6.6885 -1.2004 20 6 13.7977 -6.6891 -1.2032 21 6 14.4922 -6.6840 -0.0087 22 6 13.8011 -6.6904 1.1939 23 8 14.4818 -6.6911 2.3701 24 6 12.4135 -6.6903 1.1940 25 1 -0.4849 0.8402 0.0004 26 1 3.8745 -0.6810 0.8905 27 1 3.8752 -0.6799 -0.8895 28 1 3.6583 -3.1496 -0.8920 29 1 3.6577 -3.1516 0.8880 30 1 5.9715 -1.7969 -0.0010 31 1 8.0309 -3.2907 0.8873 32 1 8.0302 -3.2902 -0.8927 33 1 7.8133 -5.7607 -0.8924 34 1 7.8141 -5.7604 0.8875 35 1 10.0705 -4.7331 0.8873 36 1 10.0704 -4.7331 -0.8928 37 1 9.8535 -7.2029 -0.8935 38 1 9.8536 -7.2036 0.8865 39 1 11.8743 -6.6871 -2.1351 40 1 14.3354 -6.6887 -2.1399 41 1 15.5721 -6.6797 -0.0115 42 1 14.6787 -7.5748 2.7100 43 1 11.8732 -6.6912 2.1292 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123687523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:33 Heat of formation + Delta-G solvation = -91.021410 kcal Electronic energy + Delta-G solvation = -21204.543754 eV Core-core repulsion = 17827.440809 eV Total energy + Delta-G solvation = -3377.102945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.18857 -39.35879 -37.49251 -35.64854 -34.87611 -32.83028 -32.49541 -30.47191 -30.15359 -28.84924 -25.67263 -24.19493 -22.97281 -21.92430 -21.15158 -20.77274 -19.90954 -18.38440 -16.93637 -16.79167 -16.58263 -16.40753 -15.79053 -15.57276 -15.13003 -14.72338 -14.34861 -14.19012 -13.84405 -13.65451 -13.60896 -13.05927 -12.76613 -12.60088 -12.50815 -12.23836 -11.96615 -11.60787 -11.49231 -11.36862 -11.32166 -11.17552 -10.76052 -10.71838 -10.39306 -10.26552 -9.96930 -9.48679 -9.29283 -9.20830 -8.94999 -8.64385 -8.51367 -6.11624 -4.11672 0.84886 0.93286 2.97364 3.21320 3.24666 3.32350 3.33608 3.62110 3.79177 4.36986 4.37153 4.46809 4.71598 4.74726 4.76746 4.88369 4.98763 5.06963 5.17565 5.21262 5.23044 5.37235 5.42328 5.55873 5.60949 5.63784 5.68193 5.84286 6.00151 6.02149 6.06915 6.13215 6.20983 6.24457 6.25138 6.42978 6.56060 6.77922 7.13998 7.23004 7.23488 7.66445 7.93136 8.43273 8.60627 8.92803 9.48497 11.01421 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035060 B = 0.001875 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.432460 B =14929.774876 C =15171.359461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.075 0.925 9 C -0.022 4.022 10 C 0.129 3.871 11 N -0.729 5.729 12 C 0.503 3.497 13 O -0.550 6.550 14 C -0.142 4.142 15 C -0.103 4.103 16 C -0.113 4.113 17 C -0.083 4.083 18 C -0.060 4.060 19 C -0.127 4.127 20 C -0.102 4.102 21 C -0.154 4.154 22 C 0.105 3.895 23 O -0.501 6.501 24 C -0.144 4.144 25 H 0.265 0.735 26 H 0.022 0.978 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.396 0.604 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.390 0.610 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.896 -13.222 -0.165 33.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.007 3.993 11 N -0.379 5.379 12 C 0.289 3.711 13 O -0.428 6.428 14 C -0.182 4.182 15 C -0.141 4.141 16 C -0.151 4.151 17 C -0.121 4.121 18 C -0.061 4.061 19 C -0.145 4.145 20 C -0.120 4.120 21 C -0.172 4.172 22 C 0.061 3.939 23 O -0.311 6.311 24 C -0.162 4.162 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.229 0.771 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.246 0.754 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 30.228 -13.244 -0.215 33.003 hybrid contribution 0.647 0.960 0.081 1.161 sum 30.876 -12.284 -0.133 33.230 Atomic orbital electron populations 1.69910 1.06285 1.27038 1.50415 1.25013 0.94782 0.99168 0.94379 0.86740 0.80252 0.83512 0.78495 1.20227 1.21261 1.19102 1.20932 0.88692 0.94888 1.51652 0.90643 1.19797 0.97997 0.91415 0.96792 1.21491 0.76286 1.00032 1.01521 1.46372 1.09147 1.08038 1.74350 1.20660 0.89971 0.84029 0.76406 1.90679 1.70630 1.31396 1.50081 1.21688 0.92698 0.99681 1.04132 1.21335 0.93827 0.95187 1.03779 1.21600 0.95429 0.95580 1.02496 1.20670 0.89922 0.97957 1.03530 1.19866 0.96111 0.97588 0.92490 1.21133 0.94181 1.01285 0.97893 1.21045 0.94252 0.98996 0.97673 1.21414 1.00462 1.03290 0.92068 1.18487 0.89939 1.00293 0.85217 1.84835 1.76318 1.33552 1.36390 1.21358 0.93368 1.02830 0.98650 0.92556 0.96020 0.96462 0.92062 0.92036 0.77103 0.89193 0.89184 0.91072 0.91100 0.91726 0.91696 0.90490 0.90638 0.85646 0.85602 0.85620 0.75437 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.52 -14.74 9.66 -34.43 -0.33 -15.08 16 8 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 10 C 0.13 2.66 5.61 -4.04 -0.02 2.64 16 11 N -0.73 -11.90 5.56 -60.30 -0.33 -12.24 16 12 C 0.50 7.97 7.83 -10.99 -0.09 7.88 16 13 O -0.55 -10.95 15.98 5.56 0.09 -10.86 16 14 C -0.14 -1.51 5.70 -27.89 -0.16 -1.67 16 15 C -0.10 -1.04 4.50 -26.73 -0.12 -1.16 16 16 C -0.11 -0.90 5.20 -26.73 -0.14 -1.03 16 17 C -0.08 -0.62 5.34 -27.88 -0.15 -0.77 16 18 C -0.06 -0.48 5.13 -104.64 -0.54 -1.01 16 19 C -0.13 -0.93 9.70 -39.56 -0.38 -1.31 16 20 C -0.10 -0.70 10.04 -39.60 -0.40 -1.09 16 21 C -0.15 -1.14 9.99 -39.43 -0.39 -1.54 16 22 C 0.10 0.86 6.70 -39.22 -0.26 0.60 16 23 O -0.50 -3.71 13.50 -19.44 -0.26 -3.97 16 24 C -0.14 -1.18 9.64 -39.43 -0.38 -1.56 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 27 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 30 H 0.40 5.31 8.47 -40.82 -0.35 4.97 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 38 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.39 0.98 9.06 45.56 0.41 1.39 16 43 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 363.95 15.07 5.48 5.48 Total: -1.00 -34.51 363.95 -8.69 -43.21 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.19 Total: 2.44 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -3.58 Total: -13.86 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.44 Total: -38.86 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.17 Total: -14.83 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.51 -8.69 -43.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123687523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.815 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds