Wall clock time and date at job start Tue Mar 31 2020 08:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00611 * 2 1 4 4 H 1.48497 * 109.47277 * 270.00323 * 3 2 1 5 5 H 1.48501 * 109.46926 * 30.00141 * 3 2 1 6 6 H 1.48502 * 109.47324 * 150.00074 * 3 2 1 7 7 C 1.37886 * 119.99420 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00138 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99815 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46986 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46853 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99959 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99859 * 359.97438 * 12 11 10 14 14 C 1.50693 * 120.00083 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.47154 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47334 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47157 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.46986 * 180.02562 * 17 16 15 19 19 C 1.38289 * 119.96926 * 270.01927 * 18 17 16 20 20 C 1.38240 * 120.11036 * 180.02562 * 19 18 17 21 21 C 1.38173 * 120.05812 * 359.67646 * 20 19 18 22 22 C 1.38709 * 119.93675 * 0.57760 * 21 20 19 23 23 O 1.35905 * 120.05346 * 179.72475 * 22 21 20 24 24 C 1.38116 * 119.97322 * 89.99956 * 18 17 16 25 25 H 0.97004 * 119.99142 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46798 * 59.99583 * 9 7 2 27 27 H 1.09005 * 109.46531 * 300.00013 * 9 7 2 28 28 H 1.08997 * 109.47139 * 59.99751 * 10 9 7 29 29 H 1.09007 * 109.46745 * 299.99489 * 10 9 7 30 30 H 0.96999 * 120.00465 * 359.97438 * 11 10 9 31 31 H 1.08997 * 109.47272 * 60.00007 * 14 12 11 32 32 H 1.09002 * 109.47466 * 299.99690 * 14 12 11 33 33 H 1.09002 * 109.47204 * 59.99846 * 15 14 12 34 34 H 1.08995 * 109.47231 * 300.00077 * 15 14 12 35 35 H 1.09002 * 109.47179 * 59.99735 * 16 15 14 36 36 H 1.09007 * 109.46916 * 299.99776 * 16 15 14 37 37 H 1.09002 * 109.47572 * 59.99634 * 17 16 15 38 38 H 1.09000 * 109.47040 * 299.99288 * 17 16 15 39 39 H 1.08001 * 119.94341 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.97312 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.03009 * 180.29712 * 21 20 19 42 42 H 0.96705 * 113.99576 * 269.72355 * 23 22 21 43 43 H 1.08003 * 120.03068 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4399 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5115 -1.1943 0.0000 10 6 4.0214 -2.6368 -0.0014 11 7 5.4864 -2.6369 -0.0014 12 6 6.1602 -3.8041 -0.0020 13 8 5.5537 -4.8544 -0.0021 14 6 7.6671 -3.8042 -0.0027 15 6 8.1770 -5.2468 -0.0027 16 6 9.7071 -5.2469 -0.0027 17 6 10.2169 -6.6894 -0.0033 18 6 11.7240 -6.6895 -0.0027 19 6 12.4153 -6.6885 -1.2004 20 6 13.7977 -6.6891 -1.2032 21 6 14.4922 -6.6840 -0.0087 22 6 13.8011 -6.6904 1.1939 23 8 14.4818 -6.6911 2.3701 24 6 12.4135 -6.6903 1.1940 25 1 -0.4849 0.8402 0.0004 26 1 3.8745 -0.6810 0.8905 27 1 3.8752 -0.6799 -0.8895 28 1 3.6583 -3.1496 -0.8920 29 1 3.6577 -3.1516 0.8880 30 1 5.9715 -1.7969 -0.0010 31 1 8.0309 -3.2907 0.8873 32 1 8.0302 -3.2902 -0.8927 33 1 7.8133 -5.7607 -0.8924 34 1 7.8141 -5.7604 0.8875 35 1 10.0705 -4.7331 0.8873 36 1 10.0704 -4.7331 -0.8928 37 1 9.8535 -7.2029 -0.8935 38 1 9.8536 -7.2036 0.8865 39 1 11.8743 -6.6871 -2.1351 40 1 14.3354 -6.6887 -2.1399 41 1 15.5721 -6.6797 -0.0115 42 1 14.6787 -7.5748 2.7100 43 1 11.8732 -6.6912 2.1292 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123687523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:30 Heat of formation + Delta-G solvation = -114.956538 kcal Electronic energy + Delta-G solvation = -21205.581659 eV Core-core repulsion = 17827.440809 eV Total energy + Delta-G solvation = -3378.140850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.77823 -40.60891 -38.04704 -36.77351 -36.09488 -34.78512 -33.28841 -32.03485 -30.84164 -29.67445 -27.08806 -25.39106 -23.49829 -22.87432 -22.43718 -21.75850 -21.16838 -19.00216 -18.91880 -17.87539 -17.29098 -17.11919 -16.68527 -16.62840 -16.22971 -16.04658 -15.86324 -15.03189 -14.94138 -14.79198 -14.54448 -14.35608 -13.86115 -13.68265 -13.35221 -13.17575 -13.02427 -12.85104 -12.54217 -12.33646 -12.16455 -12.12644 -12.03271 -12.01052 -11.76621 -11.52740 -11.41472 -11.30305 -10.79543 -10.79035 -10.01856 -9.76368 -9.49052 -8.30902 -6.38391 0.32151 0.39746 1.38721 1.41582 1.52870 1.72138 2.34755 2.36384 2.71090 3.04078 3.30514 3.74532 3.89071 3.95536 4.06323 4.11977 4.24723 4.35903 4.38673 4.42787 4.45247 4.54905 4.63676 4.71668 4.74297 4.81678 4.86077 4.94794 5.04668 5.10226 5.18079 5.21752 5.34232 5.39919 5.43863 5.48860 5.50257 5.52057 5.65872 5.70121 5.95585 6.21405 6.64991 6.71928 6.85608 7.26109 7.35852 8.85927 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035060 B = 0.001875 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.432460 B =14929.774876 C =15171.359461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.542 4.542 8 H 0.027 0.973 9 C -0.013 4.013 10 C 0.143 3.857 11 N -0.720 5.720 12 C 0.499 3.501 13 O -0.597 6.597 14 C -0.130 4.130 15 C -0.100 4.100 16 C -0.103 4.103 17 C -0.082 4.082 18 C -0.067 4.067 19 C -0.136 4.136 20 C -0.103 4.103 21 C -0.164 4.164 22 C 0.094 3.906 23 O -0.515 6.515 24 C -0.159 4.159 25 H 0.268 0.732 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.415 0.585 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.408 0.592 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.354 -11.595 -0.597 36.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.580 4.580 8 H 0.045 0.955 9 C -0.050 4.050 10 C 0.019 3.981 11 N -0.372 5.372 12 C 0.288 3.712 13 O -0.478 6.478 14 C -0.169 4.169 15 C -0.138 4.138 16 C -0.140 4.140 17 C -0.119 4.119 18 C -0.067 4.067 19 C -0.153 4.153 20 C -0.121 4.121 21 C -0.182 4.182 22 C 0.050 3.950 23 O -0.328 6.328 24 C -0.177 4.177 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.251 0.749 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.157 0.843 40 H 0.165 0.835 41 H 0.155 0.845 42 H 0.267 0.733 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 33.738 -11.629 -0.640 35.692 hybrid contribution -0.475 0.317 0.230 0.616 sum 33.263 -11.312 -0.410 35.136 Atomic orbital electron populations 1.70085 1.08605 1.28442 1.51905 1.26118 0.95732 1.03962 0.93629 0.85510 0.79647 0.77169 0.79368 1.18916 1.21252 1.15925 1.21281 0.91719 0.93320 1.51675 0.95497 1.19652 0.94347 0.92960 0.98071 1.20991 0.79224 0.98291 0.99632 1.46154 1.07125 1.09503 1.74404 1.21657 0.92138 0.82810 0.74611 1.90667 1.72080 1.33075 1.51977 1.21737 0.87974 1.00518 1.06718 1.21291 0.95402 0.94724 1.02417 1.21493 0.93403 0.95984 1.03129 1.20642 0.89840 0.97800 1.03630 1.19932 0.96185 0.97875 0.92696 1.21369 0.94614 1.01131 0.98234 1.21336 0.94292 0.98065 0.98400 1.21640 1.01240 1.03265 0.92062 1.18654 0.90117 1.00482 0.85729 1.84776 1.76232 1.35441 1.36328 1.21473 0.93662 1.03620 0.98961 0.92324 0.94472 0.94559 0.94104 0.94172 0.74873 0.86551 0.86279 0.92383 0.92729 0.91347 0.90674 0.90154 0.90891 0.84301 0.83500 0.84452 0.73272 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 2 C 0.00 0.15 5.47 84.66 0.46 0.62 16 3 Si 0.96 42.30 27.47 68.60 1.88 44.18 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 7 C -0.54 -31.20 9.66 25.60 0.25 -30.96 16 8 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 9 C -0.01 -0.56 4.16 29.85 0.12 -0.44 16 10 C 0.14 5.90 5.61 86.38 0.48 6.38 16 11 N -0.72 -22.12 5.56 -463.07 -2.57 -24.69 16 12 C 0.50 15.09 7.83 87.65 0.69 15.78 16 13 O -0.60 -23.98 15.98 -3.03 -0.05 -24.03 16 14 C -0.13 -2.36 5.70 29.85 0.17 -2.19 16 15 C -0.10 -1.86 4.50 30.59 0.14 -1.72 16 16 C -0.10 -1.38 5.20 30.59 0.16 -1.22 16 17 C -0.08 -1.10 5.34 29.85 0.16 -0.94 16 18 C -0.07 -0.96 5.13 -19.88 -0.10 -1.06 16 19 C -0.14 -1.72 9.70 22.28 0.22 -1.51 16 20 C -0.10 -1.20 10.04 22.25 0.22 -0.98 16 21 C -0.16 -2.17 9.99 22.37 0.22 -1.95 16 22 C 0.09 1.45 6.70 22.51 0.15 1.60 16 23 O -0.51 -7.11 13.50 -92.48 -1.25 -8.36 16 24 C -0.16 -2.46 9.64 22.36 0.22 -2.24 16 25 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 26 H 0.04 1.56 7.20 -2.39 -0.02 1.54 16 27 H 0.04 1.50 7.57 -2.38 -0.02 1.48 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.41 9.62 8.47 -92.71 -0.79 8.83 16 31 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 34 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 38 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 39 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 40 H 0.15 1.01 8.06 -2.91 -0.02 0.98 16 41 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 42 H 0.41 1.67 9.06 -74.05 -0.67 1.00 16 43 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -77.48 363.95 1.36 -76.11 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -0.51 Total: 16.84 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 3.56 Total: -20.83 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -2.27 Total: -83.92 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.30 Total: -32.39 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.88 Total: 44.18 kcal Total: -77.48 1.36 -76.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123687523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.844 kcal (2) G-P(sol) polarization free energy of solvation -77.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds