Wall clock time and date at job start Tue Mar 31 2020 07:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86803 * 119.99958 * 2 1 4 4 H 1.48496 * 109.47015 * 239.99927 * 3 2 1 5 5 H 1.48500 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47097 * 120.00012 * 3 2 1 7 7 C 1.38650 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 180.02562 * 7 2 1 9 9 O 1.34833 * 119.99870 * 359.72962 * 7 2 1 10 10 C 1.35755 * 117.00051 * 174.91769 * 9 7 2 11 11 C 1.38879 * 120.07157 * 185.24799 * 10 9 7 12 12 C 1.38100 * 119.92953 * 179.79022 * 11 10 9 13 13 C 1.38291 * 120.07049 * 0.48449 * 12 11 10 14 14 C 1.50702 * 119.93291 * 179.76629 * 13 12 11 15 15 N 1.46896 * 109.47090 * 269.98085 * 14 13 12 16 16 C 1.47635 * 110.99993 * 298.88659 * 15 14 13 17 17 C 1.50811 * 108.05275 * 150.34938 * 16 15 14 18 18 C 1.53825 * 111.62433 * 95.05953 * 17 16 15 19 19 C 1.54181 * 111.96519 * 319.04073 * 18 17 16 20 20 C 1.50753 * 112.61258 * 318.48710 * 19 18 17 21 21 H 1.09002 * 109.54395 * 333.15774 * 20 19 18 22 22 O 1.42889 * 109.54380 * 212.88318 * 20 19 18 23 23 C 1.39779 * 110.99829 * 169.99892 * 15 14 13 24 24 C 1.38300 * 120.13869 * 359.74427 * 13 12 11 25 25 C 1.38094 * 120.07062 * 0.02562 * 24 13 12 26 26 H 0.96999 * 120.00014 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.03234 * 0.02562 * 11 10 9 28 28 H 1.08000 * 119.95926 * 180.23368 * 12 11 10 29 29 H 1.09003 * 109.47017 * 29.97803 * 14 13 12 30 30 H 1.08999 * 109.47029 * 149.97733 * 14 13 12 31 31 H 1.08999 * 109.74230 * 269.99114 * 16 15 14 32 32 H 1.08997 * 109.74312 * 30.70830 * 16 15 14 33 33 H 1.08996 * 109.05237 * 334.50815 * 17 16 15 34 34 H 1.08997 * 108.99460 * 215.57173 * 17 16 15 35 35 H 1.08993 * 108.98388 * 198.40324 * 18 17 16 36 36 H 1.09001 * 108.98181 * 79.68037 * 18 17 16 37 37 H 1.09004 * 108.84949 * 197.67829 * 19 18 17 38 38 H 1.08999 * 108.77023 * 79.24458 * 19 18 17 39 39 H 0.96700 * 114.00692 * 60.45977 * 22 20 19 40 40 H 1.09003 * 109.02016 * 309.71290 * 23 15 14 41 41 H 1.09003 * 109.02621 * 68.61153 * 23 15 14 42 42 H 1.08005 * 119.96421 * 180.02562 * 24 13 12 43 43 H 1.08005 * 120.03989 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0066 10 6 2.0695 -3.5049 -0.1004 11 6 1.4356 -4.7356 -0.2106 12 6 2.1860 -5.8895 -0.3237 13 6 3.5672 -5.8213 -0.3171 14 6 4.3829 -7.0829 -0.4353 15 7 4.6482 -7.6219 0.9052 16 6 5.4186 -6.6607 1.7190 17 6 5.0488 -6.8714 3.1658 18 6 6.0402 -7.8111 3.8733 19 6 6.4464 -8.9997 2.9792 20 6 5.2809 -9.5764 2.2166 21 1 4.3577 -9.3887 2.7650 22 8 5.4651 -10.9840 2.0546 23 6 5.2039 -8.9022 0.8293 24 6 4.2014 -4.5976 -0.2026 25 6 3.4568 -3.4397 -0.0941 26 1 -0.4850 0.8400 -0.0004 27 1 0.3569 -4.7899 -0.2118 28 1 1.6935 -6.8465 -0.4132 29 1 3.8312 -7.8188 -1.0202 30 1 5.3278 -6.8595 -0.9306 31 1 6.4859 -6.8351 1.5825 32 1 5.1700 -5.6426 1.4198 33 1 4.0496 -7.3037 3.2184 34 1 5.0466 -5.9079 3.6754 35 1 5.5783 -8.1937 4.7833 36 1 6.9337 -7.2472 4.1410 37 1 6.8784 -9.7802 3.6057 38 1 7.2004 -8.6621 2.2681 39 1 5.5220 -11.4718 2.8876 40 1 4.5916 -9.5167 0.1693 41 1 6.2094 -8.8292 0.4148 42 1 5.2803 -4.5476 -0.1982 43 1 3.9527 -2.4844 -0.0043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137115279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:07 Heat of formation + Delta-G solvation = -47.792867 kcal Electronic energy + Delta-G solvation = -23290.077260 eV Core-core repulsion = 19914.848845 eV Total energy + Delta-G solvation = -3375.228415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 3.46 seconds Orbital eigenvalues (eV) -39.98845 -38.88871 -37.13038 -36.02751 -34.27078 -32.32181 -31.05097 -30.13829 -29.91035 -26.65225 -25.43833 -25.11177 -23.59899 -21.97708 -20.87000 -20.37916 -19.71243 -17.97231 -17.46700 -16.92296 -16.08439 -15.54420 -15.33810 -14.71163 -14.56743 -14.51009 -14.19469 -13.80774 -13.67506 -13.53916 -13.34962 -13.09446 -12.68303 -12.45173 -12.26240 -11.89799 -11.71957 -11.48958 -11.29800 -11.02525 -10.97238 -10.81434 -10.78812 -10.62056 -10.46690 -10.41364 -10.35863 -9.94154 -9.33245 -8.82690 -8.16372 -8.11645 -7.16969 -6.45024 -4.04059 2.21916 2.28201 3.12489 3.13399 3.16469 3.68013 3.96431 4.35558 4.57051 4.60627 4.68955 4.91387 5.04530 5.07116 5.10473 5.27663 5.29096 5.34059 5.36664 5.42451 5.63403 5.64903 5.67404 5.74018 5.78385 5.81240 5.90873 5.91575 5.98835 6.07724 6.22155 6.25707 6.37016 6.44794 6.71692 6.90636 7.04551 7.16478 7.25488 7.39634 7.42805 7.44923 7.53686 7.83798 7.99885 9.00511 9.71072 10.72963 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028619 B = 0.003228 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.133269 B = 8672.870495 C = 9123.737785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.156 3.844 11 C -0.194 4.194 12 C -0.051 4.051 13 C -0.179 4.179 14 C 0.121 3.879 15 N -0.549 5.549 16 C 0.054 3.946 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.151 4.151 20 C 0.106 3.894 21 H 0.068 0.932 22 O -0.571 6.571 23 C 0.087 3.913 24 C -0.067 4.067 25 C -0.234 4.234 26 H 0.270 0.730 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.035 0.965 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.377 0.623 40 H 0.077 0.923 41 H 0.020 0.980 42 H 0.103 0.897 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.750 -15.475 4.769 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.081 6.081 10 C 0.102 3.898 11 C -0.213 4.213 12 C -0.070 4.070 13 C -0.180 4.180 14 C -0.004 4.004 15 N -0.275 5.275 16 C -0.072 4.072 17 C -0.158 4.158 18 C -0.153 4.153 19 C -0.189 4.189 20 C 0.047 3.953 21 H 0.086 0.914 22 O -0.376 6.376 23 C -0.043 4.043 24 C -0.086 4.086 25 C -0.254 4.254 26 H 0.080 0.920 27 H 0.134 0.866 28 H 0.129 0.871 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.224 0.776 40 H 0.095 0.905 41 H 0.038 0.962 42 H 0.121 0.879 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.899 -15.160 4.383 19.179 hybrid contribution 1.362 0.802 0.324 1.614 sum 12.261 -14.358 4.707 19.459 Atomic orbital electron populations 1.70030 1.05952 1.27770 1.46032 1.25280 0.95826 0.98808 0.96560 0.85796 0.78714 0.79844 0.79165 1.19516 1.20275 1.19515 1.21268 0.91738 0.80871 1.52980 0.89163 1.83983 1.34388 1.11440 1.78312 1.19399 0.90264 0.88042 0.92052 1.20220 0.99562 0.90351 1.11189 1.20447 0.92795 0.96572 0.97215 1.19060 0.93635 0.93069 1.12250 1.20739 0.97334 0.94587 0.87784 1.58652 1.51233 1.01801 1.15770 1.22010 0.94612 0.97500 0.93065 1.21424 1.00052 0.99311 0.95033 1.21894 0.99497 0.95898 0.98054 1.22186 0.99022 0.98367 0.99321 1.21602 0.97210 0.80055 0.96424 0.91412 1.86442 1.96326 1.19093 1.35724 1.20627 0.97872 0.90270 0.95499 1.20573 0.97918 0.91995 0.98074 1.21109 0.93837 0.98733 1.11681 0.91969 0.86595 0.87065 0.90785 0.94914 0.94636 0.88926 0.90464 0.91663 0.92253 0.92215 0.91889 0.91867 0.77555 0.90473 0.96227 0.87857 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.39 -10.91 9.49 30.88 0.29 -10.62 16 8 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 9 O -0.18 -5.06 9.76 0.03 0.00 -5.06 16 10 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 11 C -0.19 -4.08 9.99 -39.39 -0.39 -4.47 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 13 C -0.18 -2.98 4.88 -104.58 -0.51 -3.49 16 14 C 0.12 1.65 5.13 -4.98 -0.03 1.63 16 15 N -0.55 -7.09 3.96 -241.45 -0.96 -8.04 16 16 C 0.05 0.68 5.16 -4.52 -0.02 0.66 16 17 C -0.12 -1.38 5.41 -27.40 -0.15 -1.53 16 18 C -0.12 -1.07 5.91 -25.68 -0.15 -1.22 16 19 C -0.15 -1.39 5.05 -27.24 -0.14 -1.52 16 20 C 0.11 1.10 3.19 -27.11 -0.09 1.02 16 21 H 0.07 0.75 7.11 -51.93 -0.37 0.38 16 22 O -0.57 -5.70 13.27 -35.23 -0.47 -6.17 16 23 C 0.09 1.03 4.60 -6.74 -0.03 1.00 16 24 C -0.07 -1.18 7.71 -39.61 -0.31 -1.49 16 25 C -0.23 -4.99 9.17 -39.40 -0.36 -5.35 16 26 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 28 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.07 0.94 7.78 -51.93 -0.40 0.54 16 30 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.04 0.42 6.66 -51.93 -0.35 0.07 16 32 H 0.09 1.31 4.46 -51.93 -0.23 1.08 16 33 H 0.08 0.98 7.26 -51.93 -0.38 0.60 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.49 7.86 -51.93 -0.41 0.08 16 38 H 0.06 0.63 6.57 -51.93 -0.34 0.29 16 39 H 0.38 2.13 8.94 45.56 0.41 2.54 16 40 H 0.08 0.93 7.80 -51.93 -0.40 0.53 16 41 H 0.02 0.24 7.54 -51.93 -0.39 -0.15 16 42 H 0.10 1.58 7.54 -52.48 -0.40 1.18 16 43 H 0.13 2.68 5.64 -52.48 -0.30 2.38 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -30.62 336.36 -8.74 -39.36 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.50 Total: 6.20 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -2.62 Total: -22.21 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: -0.20 Total: -32.57 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.47 Total: -11.24 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.62 -8.74 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.432 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.46 seconds