Wall clock time and date at job start Tue Mar 31 2020 07:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86803 * 119.99958 * 2 1 4 4 H 1.48496 * 109.47015 * 239.99927 * 3 2 1 5 5 H 1.48500 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47097 * 120.00012 * 3 2 1 7 7 C 1.38650 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 180.02562 * 7 2 1 9 9 O 1.34833 * 119.99870 * 359.72962 * 7 2 1 10 10 C 1.35755 * 117.00051 * 174.91769 * 9 7 2 11 11 C 1.38879 * 120.07157 * 185.24799 * 10 9 7 12 12 C 1.38100 * 119.92953 * 179.79022 * 11 10 9 13 13 C 1.38291 * 120.07049 * 0.48449 * 12 11 10 14 14 C 1.50702 * 119.93291 * 179.76629 * 13 12 11 15 15 N 1.46896 * 109.47090 * 269.98085 * 14 13 12 16 16 C 1.47635 * 110.99993 * 298.88659 * 15 14 13 17 17 C 1.50811 * 108.05275 * 150.34938 * 16 15 14 18 18 C 1.53825 * 111.62433 * 95.05953 * 17 16 15 19 19 C 1.54181 * 111.96519 * 319.04073 * 18 17 16 20 20 C 1.50753 * 112.61258 * 318.48710 * 19 18 17 21 21 H 1.09002 * 109.54395 * 333.15774 * 20 19 18 22 22 O 1.42889 * 109.54380 * 212.88318 * 20 19 18 23 23 C 1.39779 * 110.99829 * 169.99892 * 15 14 13 24 24 C 1.38300 * 120.13869 * 359.74427 * 13 12 11 25 25 C 1.38094 * 120.07062 * 0.02562 * 24 13 12 26 26 H 0.96999 * 120.00014 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.03234 * 0.02562 * 11 10 9 28 28 H 1.08000 * 119.95926 * 180.23368 * 12 11 10 29 29 H 1.09003 * 109.47017 * 29.97803 * 14 13 12 30 30 H 1.08999 * 109.47029 * 149.97733 * 14 13 12 31 31 H 1.08999 * 109.74230 * 269.99114 * 16 15 14 32 32 H 1.08997 * 109.74312 * 30.70830 * 16 15 14 33 33 H 1.08996 * 109.05237 * 334.50815 * 17 16 15 34 34 H 1.08997 * 108.99460 * 215.57173 * 17 16 15 35 35 H 1.08993 * 108.98388 * 198.40324 * 18 17 16 36 36 H 1.09001 * 108.98181 * 79.68037 * 18 17 16 37 37 H 1.09004 * 108.84949 * 197.67829 * 19 18 17 38 38 H 1.08999 * 108.77023 * 79.24458 * 19 18 17 39 39 H 0.96700 * 114.00692 * 60.45977 * 22 20 19 40 40 H 1.09003 * 109.02016 * 309.71290 * 23 15 14 41 41 H 1.09003 * 109.02621 * 68.61153 * 23 15 14 42 42 H 1.08005 * 119.96421 * 180.02562 * 24 13 12 43 43 H 1.08005 * 120.03989 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0066 10 6 2.0695 -3.5049 -0.1004 11 6 1.4356 -4.7356 -0.2106 12 6 2.1860 -5.8895 -0.3237 13 6 3.5672 -5.8213 -0.3171 14 6 4.3829 -7.0829 -0.4353 15 7 4.6482 -7.6219 0.9052 16 6 5.4186 -6.6607 1.7190 17 6 5.0488 -6.8714 3.1658 18 6 6.0402 -7.8111 3.8733 19 6 6.4464 -8.9997 2.9792 20 6 5.2809 -9.5764 2.2166 21 1 4.3577 -9.3887 2.7650 22 8 5.4651 -10.9840 2.0546 23 6 5.2039 -8.9022 0.8293 24 6 4.2014 -4.5976 -0.2026 25 6 3.4568 -3.4397 -0.0941 26 1 -0.4850 0.8400 -0.0004 27 1 0.3569 -4.7899 -0.2118 28 1 1.6935 -6.8465 -0.4132 29 1 3.8312 -7.8188 -1.0202 30 1 5.3278 -6.8595 -0.9306 31 1 6.4859 -6.8351 1.5825 32 1 5.1700 -5.6426 1.4198 33 1 4.0496 -7.3037 3.2184 34 1 5.0466 -5.9079 3.6754 35 1 5.5783 -8.1937 4.7833 36 1 6.9337 -7.2472 4.1410 37 1 6.8784 -9.7802 3.6057 38 1 7.2004 -8.6621 2.2681 39 1 5.5220 -11.4718 2.8876 40 1 4.5916 -9.5167 0.1693 41 1 6.2094 -8.8292 0.4148 42 1 5.2803 -4.5476 -0.1982 43 1 3.9527 -2.4844 -0.0043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137115279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:01 Heat of formation + Delta-G solvation = -68.954542 kcal Electronic energy + Delta-G solvation = -23290.994899 eV Core-core repulsion = 19914.848845 eV Total energy + Delta-G solvation = -3376.146054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.13906 -40.39002 -38.51014 -37.17790 -35.21275 -34.27048 -32.17326 -31.67921 -31.15401 -27.98456 -27.14006 -26.05252 -24.78506 -23.59570 -22.03870 -21.66360 -20.56363 -19.81343 -18.80343 -18.23931 -17.06187 -16.63457 -16.54851 -16.23729 -16.06526 -15.61473 -15.49856 -15.35543 -15.05477 -14.69379 -14.38466 -14.32950 -14.12080 -13.92606 -13.56825 -13.13119 -12.96690 -12.84422 -12.57162 -12.44131 -12.31123 -12.15807 -12.01900 -11.84132 -11.75478 -11.44355 -11.29185 -11.13531 -10.76605 -10.70763 -9.72385 -9.16278 -8.87180 -8.45957 -6.14183 0.61844 0.69171 1.35264 1.45896 1.51547 2.18582 2.65443 2.95246 3.24133 3.52263 3.54593 3.83881 3.85888 4.02641 4.05542 4.14241 4.21164 4.22436 4.26059 4.41563 4.47072 4.53610 4.62648 4.73299 4.75949 4.78134 4.85236 4.86145 4.94729 5.07165 5.10550 5.16462 5.20430 5.25732 5.32045 5.40358 5.47448 5.59771 5.73002 5.82960 6.04199 6.14883 6.24539 6.51513 6.91439 6.98754 7.80410 8.77227 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028619 B = 0.003228 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.133269 B = 8672.870495 C = 9123.737785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.414 4.414 8 H 0.102 0.898 9 O -0.233 6.233 10 C 0.116 3.884 11 C -0.206 4.206 12 C -0.046 4.046 13 C -0.152 4.152 14 C 0.122 3.878 15 N -0.554 5.554 16 C 0.055 3.945 17 C -0.120 4.120 18 C -0.110 4.110 19 C -0.146 4.146 20 C 0.111 3.889 21 H 0.060 0.940 22 O -0.583 6.583 23 C 0.086 3.914 24 C -0.060 4.060 25 C -0.241 4.241 26 H 0.272 0.728 27 H 0.110 0.890 28 H 0.143 0.857 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.396 0.604 40 H 0.075 0.925 41 H 0.022 0.978 42 H 0.136 0.864 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.699 -17.575 5.064 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.490 4.490 8 H 0.119 0.881 9 O -0.140 6.140 10 C 0.065 3.935 11 C -0.225 4.225 12 C -0.065 4.065 13 C -0.153 4.153 14 C -0.004 4.004 15 N -0.279 5.279 16 C -0.072 4.072 17 C -0.158 4.158 18 C -0.148 4.148 19 C -0.184 4.184 20 C 0.052 3.948 21 H 0.078 0.922 22 O -0.391 6.391 23 C -0.044 4.044 24 C -0.078 4.078 25 C -0.261 4.261 26 H 0.081 0.919 27 H 0.129 0.871 28 H 0.161 0.839 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.246 0.754 40 H 0.093 0.907 41 H 0.039 0.961 42 H 0.154 0.846 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.887 -17.332 4.692 22.699 hybrid contribution 0.567 1.056 0.232 1.221 sum 14.454 -16.276 4.924 22.317 Atomic orbital electron populations 1.70183 1.08048 1.28833 1.48955 1.26584 0.96826 1.02738 0.95893 0.84664 0.77404 0.74318 0.79941 1.18170 1.19691 1.18098 1.21780 0.92499 0.81474 1.53213 0.88103 1.83947 1.36034 1.12597 1.81439 1.19926 0.91629 0.87858 0.94054 1.20448 0.99853 0.90653 1.11543 1.20807 0.93368 0.96583 0.95712 1.19518 0.93558 0.94275 1.07935 1.20768 0.97665 0.93203 0.88747 1.58587 1.51857 1.02370 1.15123 1.21997 0.95274 0.96347 0.93536 1.21394 1.00034 0.99616 0.94725 1.21846 0.99205 0.95592 0.98149 1.22129 0.98301 0.98674 0.99281 1.21456 0.97415 0.80419 0.95487 0.92172 1.86398 1.96294 1.18916 1.37540 1.20648 0.97733 0.89483 0.96535 1.20889 0.99390 0.91043 0.96511 1.21200 0.93011 0.99905 1.11952 0.91867 0.87143 0.83913 0.89133 0.93421 0.93465 0.90702 0.91882 0.92197 0.91271 0.91403 0.90029 0.92439 0.75362 0.90681 0.96051 0.84646 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.99 13.67 21.61 0.30 -56.69 16 2 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 3 Si 1.02 42.87 29.55 68.60 2.03 44.89 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.41 -24.18 9.49 67.92 0.64 -23.53 16 8 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 9 O -0.23 -14.17 9.76 -22.82 -0.22 -14.39 16 10 C 0.12 5.78 6.65 22.58 0.15 5.93 16 11 C -0.21 -8.84 9.99 22.39 0.22 -8.62 16 12 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 13 C -0.15 -4.66 4.88 -19.84 -0.10 -4.75 16 14 C 0.12 2.86 5.13 85.56 0.44 3.30 16 15 N -0.55 -12.55 3.96 -917.81 -3.64 -16.19 16 16 C 0.05 1.23 5.16 85.45 0.44 1.67 16 17 C -0.12 -2.50 5.41 30.16 0.16 -2.34 16 18 C -0.11 -1.72 5.91 31.27 0.18 -1.53 16 19 C -0.15 -2.18 5.05 30.26 0.15 -2.03 16 20 C 0.11 1.98 3.19 30.35 0.10 2.07 16 21 H 0.06 1.17 7.11 -2.39 -0.02 1.15 16 22 O -0.58 -9.83 13.27 -148.98 -1.98 -11.81 16 23 C 0.09 1.74 4.60 88.07 0.40 2.15 16 24 C -0.06 -2.01 7.71 22.25 0.17 -1.84 16 25 C -0.24 -10.40 9.17 22.39 0.21 -10.19 16 26 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 28 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 29 H 0.09 1.90 7.78 -2.39 -0.02 1.88 16 30 H 0.05 1.03 8.08 -2.39 -0.02 1.01 16 31 H 0.05 0.96 6.66 -2.39 -0.02 0.94 16 32 H 0.07 1.94 4.46 -2.39 -0.01 1.92 16 33 H 0.06 1.50 7.26 -2.39 -0.02 1.48 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 0.94 7.86 -2.38 -0.02 0.92 16 38 H 0.06 0.95 6.57 -2.39 -0.02 0.93 16 39 H 0.40 3.18 8.94 -74.06 -0.66 2.52 16 40 H 0.07 1.57 7.80 -2.39 -0.02 1.55 16 41 H 0.02 0.44 7.54 -2.39 -0.02 0.42 16 42 H 0.14 3.70 7.54 -2.91 -0.02 3.67 16 43 H 0.12 5.16 5.64 -2.91 -0.02 5.14 16 Total: -1.00 -70.63 336.36 0.71 -69.92 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.36 Total: 26.18 kcal Atomic # 6 Polarization: -45.78 SS G_CDS: 3.86 Total: -41.92 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -3.34 Total: -72.88 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -2.20 Total: -26.20 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -70.63 0.71 -69.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.969 kcal (2) G-P(sol) polarization free energy of solvation -70.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds