Wall clock time and date at job start Tue Mar 31 2020 07:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86795 * 120.00133 * 2 1 4 4 H 1.48503 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46864 * 299.99990 * 3 2 1 6 6 H 1.48497 * 109.47130 * 59.99861 * 3 2 1 7 7 C 1.38650 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99985 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00462 * 0.02562 * 7 2 1 10 10 C 1.35753 * 117.00470 * 185.05887 * 9 7 2 11 11 C 1.38877 * 120.06607 * 354.46167 * 10 9 7 12 12 C 1.38096 * 119.92742 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.07228 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93397 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.47136 * 90.00004 * 14 13 12 16 16 C 1.48008 * 110.99895 * 293.95903 * 15 14 13 17 17 C 1.50452 * 112.82168 * 191.34556 * 16 15 14 18 18 C 1.54306 * 108.50108 * 93.72444 * 17 16 15 19 19 C 1.45882 * 112.18741 * 281.46388 * 18 17 16 20 20 C 1.54309 * 112.11446 * 61.16627 * 19 18 17 21 21 H 1.08996 * 109.63754 * 41.11958 * 20 19 18 22 22 O 1.42901 * 109.63157 * 161.72101 * 20 19 18 23 23 C 1.47997 * 111.00105 * 165.23659 * 15 14 13 24 24 C 1.38302 * 120.13620 * 0.25158 * 13 12 11 25 25 C 1.38096 * 120.06822 * 359.45611 * 24 13 12 26 26 H 0.96993 * 120.00105 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.03409 * 0.02562 * 11 10 9 28 28 H 1.08002 * 119.96263 * 180.02562 * 12 11 10 29 29 H 1.08999 * 109.46826 * 330.00366 * 14 13 12 30 30 H 1.08997 * 109.47394 * 210.00411 * 14 13 12 31 31 H 1.08994 * 108.81648 * 70.48093 * 16 15 14 32 32 H 1.09002 * 108.72133 * 312.13866 * 16 15 14 33 33 H 1.08997 * 109.63158 * 334.02098 * 17 16 15 34 34 H 1.09001 * 109.62790 * 213.43021 * 17 16 15 35 35 H 1.08997 * 108.94085 * 160.76456 * 18 17 16 36 36 H 1.08997 * 108.86371 * 42.11171 * 18 17 16 37 37 H 1.08997 * 108.93854 * 181.81631 * 19 18 17 38 38 H 1.09001 * 108.93816 * 300.51493 * 19 18 17 39 39 H 0.96696 * 113.99735 * 299.99259 * 22 20 19 40 40 H 1.09003 * 108.81037 * 205.70546 * 23 15 14 41 41 H 1.09007 * 108.80658 * 324.08568 * 23 15 14 42 42 H 1.07997 * 119.96302 * 179.70098 * 24 13 12 43 43 H 1.08003 * 120.03575 * 180.26998 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8908 2.3963 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4571 -3.4395 0.0953 12 6 4.2021 -4.5971 0.2040 13 6 3.5683 -5.8205 0.3246 14 6 4.3845 -7.0819 0.4424 15 7 4.6558 -7.3590 1.8593 16 6 5.5296 -6.3180 2.4455 17 6 6.0551 -6.6944 3.8041 18 6 7.4361 -7.3598 3.6278 19 6 7.3271 -8.7492 3.1967 20 6 6.6216 -8.8799 1.8306 21 1 6.9690 -8.0923 1.1621 22 8 6.9094 -10.1590 1.2621 23 6 5.1380 -8.7457 2.0457 24 6 2.1870 -5.8891 0.3316 25 6 1.4364 -4.7346 0.2293 26 1 -0.4850 0.8400 -0.0004 27 1 3.9525 -2.4846 0.0007 28 1 5.2810 -4.5471 0.1948 29 1 5.3271 -6.9557 -0.0901 30 1 3.8309 -7.9147 0.0089 31 1 4.9627 -5.3912 2.5322 32 1 6.3736 -6.1520 1.7759 33 1 5.3693 -7.3947 4.2808 34 1 6.1553 -5.7997 4.4186 35 1 7.9694 -7.3250 4.5778 36 1 8.0037 -6.8018 2.8832 37 1 8.3274 -9.1754 3.1205 38 1 6.7609 -9.3076 3.9422 39 1 7.8510 -10.3198 1.1118 40 1 4.8983 -9.0680 3.0590 41 1 4.6211 -9.3954 1.3393 42 1 1.6950 -6.8463 0.4211 43 1 0.3577 -4.7884 0.2392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137115280.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:17 Heat of formation + Delta-G solvation = -51.804855 kcal Electronic energy + Delta-G solvation = -23241.618274 eV Core-core repulsion = 19866.215886 eV Total energy + Delta-G solvation = -3375.402388 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.95242 -38.90512 -36.98327 -36.03782 -34.39404 -32.28282 -31.03403 -30.14013 -30.03443 -26.76953 -25.35144 -24.95275 -23.68123 -21.92200 -21.01026 -20.42258 -19.59080 -17.95931 -17.88211 -16.94823 -16.20890 -15.28829 -15.09008 -14.87471 -14.60211 -14.50972 -14.07501 -13.86635 -13.62058 -13.50245 -13.42115 -13.02471 -12.67463 -12.48605 -12.10541 -12.06452 -11.80307 -11.52292 -11.48877 -11.22114 -10.99073 -10.97405 -10.74886 -10.58610 -10.51891 -10.44487 -10.39851 -10.02321 -9.30573 -8.82467 -8.19840 -8.10300 -7.14176 -6.43828 -4.02569 2.25565 2.30914 3.12187 3.13869 3.19389 3.75817 3.97444 4.12963 4.33845 4.46927 4.66389 4.85506 4.90292 5.03184 5.10459 5.16869 5.27973 5.28566 5.32912 5.47733 5.53362 5.62513 5.69464 5.74718 5.77537 5.81250 5.84683 5.88827 5.96284 6.00666 6.16493 6.21039 6.24990 6.45887 6.74116 6.93386 7.04517 7.12034 7.19323 7.30018 7.39011 7.43742 7.47596 7.86352 8.01532 9.02039 9.73131 10.74445 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.003225 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.498225 B = 8680.975925 C = 9283.040646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.065 4.065 13 C -0.178 4.178 14 C 0.116 3.884 15 N -0.533 5.533 16 C 0.059 3.941 17 C -0.123 4.123 18 C -0.121 4.121 19 C -0.145 4.145 20 C 0.077 3.923 21 H 0.054 0.946 22 O -0.565 6.565 23 C 0.062 3.938 24 C -0.053 4.053 25 C -0.194 4.194 26 H 0.269 0.731 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.374 0.626 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.629 -15.008 4.995 21.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.084 4.084 13 C -0.179 4.179 14 C -0.011 4.011 15 N -0.259 5.259 16 C -0.068 4.068 17 C -0.161 4.161 18 C -0.159 4.159 19 C -0.183 4.183 20 C 0.016 3.984 21 H 0.072 0.928 22 O -0.370 6.370 23 C -0.066 4.066 24 C -0.071 4.071 25 C -0.213 4.213 26 H 0.079 0.921 27 H 0.143 0.857 28 H 0.119 0.881 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.221 0.779 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.129 0.871 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.137 -14.819 5.250 20.488 hybrid contribution 1.984 0.943 -0.411 2.235 sum 15.121 -13.876 4.839 21.086 Atomic orbital electron populations 1.70047 1.05943 1.27513 1.46305 1.25281 0.95832 0.98806 0.96632 0.85658 0.79114 0.80464 0.78246 1.19144 1.20165 1.20147 1.21361 0.91784 0.80863 1.52712 0.89085 1.83981 1.34369 1.11465 1.78441 1.19395 0.90257 0.88045 0.92100 1.21109 0.93836 0.98747 1.11690 1.20573 0.97893 0.91950 0.97989 1.19074 0.93604 0.93381 1.11853 1.20839 0.97214 0.96123 0.86922 1.62052 1.46767 1.00368 1.16694 1.21861 0.94801 0.95629 0.94463 1.21482 0.95906 1.01313 0.97388 1.20561 0.97974 0.95861 1.01504 1.21246 1.00892 0.98030 0.98150 1.22286 0.98068 0.85113 0.92915 0.92812 1.86545 1.29978 1.35824 1.84640 1.21877 0.91237 0.90418 1.03039 1.20454 0.92803 0.96681 0.97207 1.20219 0.99557 0.90336 1.11213 0.92097 0.85720 0.88125 0.95198 0.90738 0.89846 0.95215 0.90552 0.90855 0.91815 0.92242 0.92154 0.91230 0.77870 0.90355 0.90211 0.87069 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.39 -10.97 9.49 30.88 0.29 -10.67 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 9 O -0.18 -5.15 9.76 0.04 0.00 -5.15 16 10 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 11 C -0.23 -5.09 9.17 -39.40 -0.36 -5.45 16 12 C -0.07 -1.19 8.23 -39.61 -0.33 -1.51 16 13 C -0.18 -3.04 4.90 -104.57 -0.51 -3.55 16 14 C 0.12 1.61 5.04 -4.98 -0.03 1.59 16 15 N -0.53 -6.91 4.67 -237.30 -1.11 -8.02 16 16 C 0.06 0.73 4.21 -4.49 -0.02 0.71 16 17 C -0.12 -1.24 5.63 -27.32 -0.15 -1.39 16 18 C -0.12 -1.01 5.30 -29.42 -0.16 -1.17 16 19 C -0.15 -1.19 4.96 -29.41 -0.15 -1.33 16 20 C 0.08 0.74 3.14 -27.29 -0.09 0.66 16 21 H 0.05 0.57 6.83 -51.93 -0.35 0.21 16 22 O -0.57 -5.43 13.22 -35.23 -0.47 -5.90 16 23 C 0.06 0.70 4.91 -4.46 -0.02 0.68 16 24 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 25 C -0.19 -4.15 9.99 -39.39 -0.39 -4.54 16 26 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.13 2.72 5.64 -52.49 -0.30 2.43 16 28 H 0.10 1.59 8.03 -52.49 -0.42 1.17 16 29 H 0.03 0.40 7.76 -51.93 -0.40 0.00 16 30 H 0.07 0.98 7.61 -51.93 -0.40 0.59 16 31 H 0.08 1.22 6.86 -51.93 -0.36 0.86 16 32 H 0.03 0.36 6.35 -51.93 -0.33 0.03 16 33 H 0.08 0.80 7.08 -51.93 -0.37 0.43 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.51 7.51 -51.93 -0.39 0.12 16 37 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 38 H 0.07 0.59 7.51 -51.93 -0.39 0.20 16 39 H 0.37 2.05 9.04 45.56 0.41 2.46 16 40 H 0.08 0.85 6.58 -51.93 -0.34 0.51 16 41 H 0.08 0.94 7.39 -51.93 -0.38 0.56 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.12 2.41 8.06 -52.48 -0.42 1.98 16 LS Contribution 337.17 15.07 5.08 5.08 Total: -1.00 -31.04 337.17 -8.94 -39.97 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.54 Total: 5.98 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -2.65 Total: -22.84 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: -0.35 Total: -32.70 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.47 Total: -11.05 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.04 -8.94 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115280.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.830 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds