Wall clock time and date at job start Tue Mar 31 2020 07:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86795 * 120.00133 * 2 1 4 4 H 1.48503 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46864 * 299.99990 * 3 2 1 6 6 H 1.48497 * 109.47130 * 59.99861 * 3 2 1 7 7 C 1.38650 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99985 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00462 * 0.02562 * 7 2 1 10 10 C 1.35753 * 117.00470 * 185.05887 * 9 7 2 11 11 C 1.38877 * 120.06607 * 354.46167 * 10 9 7 12 12 C 1.38096 * 119.92742 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.07228 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93397 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.47136 * 90.00004 * 14 13 12 16 16 C 1.48008 * 110.99895 * 293.95903 * 15 14 13 17 17 C 1.50452 * 112.82168 * 191.34556 * 16 15 14 18 18 C 1.54306 * 108.50108 * 93.72444 * 17 16 15 19 19 C 1.45882 * 112.18741 * 281.46388 * 18 17 16 20 20 C 1.54309 * 112.11446 * 61.16627 * 19 18 17 21 21 H 1.08996 * 109.63754 * 41.11958 * 20 19 18 22 22 O 1.42901 * 109.63157 * 161.72101 * 20 19 18 23 23 C 1.47997 * 111.00105 * 165.23659 * 15 14 13 24 24 C 1.38302 * 120.13620 * 0.25158 * 13 12 11 25 25 C 1.38096 * 120.06822 * 359.45611 * 24 13 12 26 26 H 0.96993 * 120.00105 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.03409 * 0.02562 * 11 10 9 28 28 H 1.08002 * 119.96263 * 180.02562 * 12 11 10 29 29 H 1.08999 * 109.46826 * 330.00366 * 14 13 12 30 30 H 1.08997 * 109.47394 * 210.00411 * 14 13 12 31 31 H 1.08994 * 108.81648 * 70.48093 * 16 15 14 32 32 H 1.09002 * 108.72133 * 312.13866 * 16 15 14 33 33 H 1.08997 * 109.63158 * 334.02098 * 17 16 15 34 34 H 1.09001 * 109.62790 * 213.43021 * 17 16 15 35 35 H 1.08997 * 108.94085 * 160.76456 * 18 17 16 36 36 H 1.08997 * 108.86371 * 42.11171 * 18 17 16 37 37 H 1.08997 * 108.93854 * 181.81631 * 19 18 17 38 38 H 1.09001 * 108.93816 * 300.51493 * 19 18 17 39 39 H 0.96696 * 113.99735 * 299.99259 * 22 20 19 40 40 H 1.09003 * 108.81037 * 205.70546 * 23 15 14 41 41 H 1.09007 * 108.80658 * 324.08568 * 23 15 14 42 42 H 1.07997 * 119.96302 * 179.70098 * 24 13 12 43 43 H 1.08003 * 120.03575 * 180.26998 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8908 2.3963 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4571 -3.4395 0.0953 12 6 4.2021 -4.5971 0.2040 13 6 3.5683 -5.8205 0.3246 14 6 4.3845 -7.0819 0.4424 15 7 4.6558 -7.3590 1.8593 16 6 5.5296 -6.3180 2.4455 17 6 6.0551 -6.6944 3.8041 18 6 7.4361 -7.3598 3.6278 19 6 7.3271 -8.7492 3.1967 20 6 6.6216 -8.8799 1.8306 21 1 6.9690 -8.0923 1.1621 22 8 6.9094 -10.1590 1.2621 23 6 5.1380 -8.7457 2.0457 24 6 2.1870 -5.8891 0.3316 25 6 1.4364 -4.7346 0.2293 26 1 -0.4850 0.8400 -0.0004 27 1 3.9525 -2.4846 0.0007 28 1 5.2810 -4.5471 0.1948 29 1 5.3271 -6.9557 -0.0901 30 1 3.8309 -7.9147 0.0089 31 1 4.9627 -5.3912 2.5322 32 1 6.3736 -6.1520 1.7759 33 1 5.3693 -7.3947 4.2808 34 1 6.1553 -5.7997 4.4186 35 1 7.9694 -7.3250 4.5778 36 1 8.0037 -6.8018 2.8832 37 1 8.3274 -9.1754 3.1205 38 1 6.7609 -9.3076 3.9422 39 1 7.8510 -10.3198 1.1118 40 1 4.8983 -9.0680 3.0590 41 1 4.6211 -9.3954 1.3393 42 1 1.6950 -6.8463 0.4211 43 1 0.3577 -4.7884 0.2392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137115280.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:16 Heat of formation + Delta-G solvation = -73.872405 kcal Electronic energy + Delta-G solvation = -23242.575195 eV Core-core repulsion = 19866.215886 eV Total energy + Delta-G solvation = -3376.359308 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.04109 -40.41588 -38.47855 -37.02170 -35.37090 -34.25529 -31.98538 -31.63937 -31.43995 -28.07992 -27.15288 -25.79954 -24.86573 -23.56792 -22.17600 -21.50470 -20.55682 -19.82595 -18.80458 -18.61833 -17.17316 -16.55161 -16.38916 -16.14864 -15.92913 -15.60072 -15.46750 -15.34838 -15.07905 -14.62964 -14.37745 -14.32676 -14.16545 -13.84102 -13.54810 -13.06537 -12.98605 -12.95647 -12.63893 -12.54963 -12.25803 -12.15139 -12.11904 -12.03446 -11.71383 -11.52516 -11.31029 -11.15579 -10.79760 -10.72363 -9.75431 -9.20327 -8.86194 -8.46681 -6.14779 0.61801 0.68715 1.34900 1.43299 1.53350 2.17864 2.67809 2.96518 3.24924 3.40133 3.54032 3.65038 3.78159 3.98969 4.04639 4.08855 4.18661 4.22095 4.31154 4.37075 4.41365 4.54544 4.61265 4.68004 4.71097 4.80056 4.86943 4.96595 5.01613 5.09788 5.14685 5.15817 5.17727 5.23314 5.31400 5.34562 5.40942 5.59189 5.72404 5.82171 6.03835 6.11017 6.21653 6.27529 6.86126 6.98181 7.79851 8.77006 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.003225 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.498225 B = 8680.975925 C = 9283.040646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.115 3.885 11 C -0.242 4.242 12 C -0.060 4.060 13 C -0.152 4.152 14 C 0.119 3.881 15 N -0.544 5.544 16 C 0.061 3.939 17 C -0.122 4.122 18 C -0.116 4.116 19 C -0.141 4.141 20 C 0.082 3.918 21 H 0.049 0.951 22 O -0.579 6.579 23 C 0.065 3.935 24 C -0.048 4.048 25 C -0.205 4.205 26 H 0.272 0.728 27 H 0.117 0.883 28 H 0.132 0.868 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.393 0.607 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.144 0.856 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.850 -16.984 5.538 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.065 3.935 11 C -0.261 4.261 12 C -0.078 4.078 13 C -0.153 4.153 14 C -0.008 4.008 15 N -0.270 5.270 16 C -0.066 4.066 17 C -0.159 4.159 18 C -0.154 4.154 19 C -0.179 4.179 20 C 0.021 3.979 21 H 0.066 0.934 22 O -0.387 6.387 23 C -0.063 4.063 24 C -0.067 4.067 25 C -0.224 4.224 26 H 0.081 0.919 27 H 0.135 0.865 28 H 0.150 0.850 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.243 0.757 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.162 0.838 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.407 -16.861 5.797 24.230 hybrid contribution 1.104 1.174 -0.547 1.702 sum 17.511 -15.687 5.250 24.089 Atomic orbital electron populations 1.70192 1.08046 1.28709 1.49064 1.26593 0.96852 1.02742 0.95920 0.84527 0.78241 0.74842 0.78573 1.17442 1.19320 1.19338 1.21853 0.92484 0.81467 1.53051 0.88155 1.83944 1.35996 1.12614 1.81495 1.19918 0.91590 0.87892 0.94147 1.21195 0.93051 0.99873 1.11962 1.20870 0.99295 0.91065 0.96587 1.19556 0.93594 0.94579 1.07561 1.20826 0.97369 0.94530 0.88106 1.61927 1.47846 1.01515 1.15722 1.21842 0.94408 0.94402 0.95910 1.21464 0.96915 1.01567 0.95987 1.20516 0.96737 0.95772 1.02329 1.21197 1.01717 0.97902 0.97051 1.22129 0.96962 0.85098 0.93671 0.93355 1.86497 1.31944 1.35542 1.84680 1.21848 0.92490 0.88825 1.03118 1.20823 0.93357 0.96757 0.95723 1.20455 0.99888 0.90621 1.11479 0.91860 0.86500 0.85046 0.93931 0.89327 0.92583 0.94560 0.90976 0.90610 0.90446 0.92102 0.90333 0.91390 0.75734 0.90031 0.90664 0.83850 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.24 13.67 21.61 0.30 -56.94 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 3 Si 1.02 43.20 29.55 68.60 2.03 45.23 16 4 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 7 C -0.41 -24.33 9.49 67.92 0.64 -23.69 16 8 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 9 O -0.23 -14.32 9.76 -22.77 -0.22 -14.55 16 10 C 0.11 5.83 6.65 22.58 0.15 5.98 16 11 C -0.24 -10.65 9.17 22.39 0.21 -10.44 16 12 C -0.06 -2.07 8.23 22.25 0.18 -1.89 16 13 C -0.15 -4.83 4.90 -19.83 -0.10 -4.93 16 14 C 0.12 2.90 5.04 85.56 0.43 3.33 16 15 N -0.54 -12.54 4.67 -904.67 -4.22 -16.76 16 16 C 0.06 1.36 4.21 85.27 0.36 1.72 16 17 C -0.12 -2.14 5.63 30.21 0.17 -1.97 16 18 C -0.12 -1.55 5.30 28.85 0.15 -1.39 16 19 C -0.14 -1.78 4.96 28.86 0.14 -1.64 16 20 C 0.08 1.31 3.14 30.23 0.09 1.40 16 21 H 0.05 0.84 6.83 -2.39 -0.02 0.82 16 22 O -0.58 -9.14 13.22 -148.98 -1.97 -11.11 16 23 C 0.06 1.25 4.91 85.29 0.42 1.67 16 24 C -0.05 -1.68 9.69 22.25 0.22 -1.46 16 25 C -0.21 -8.98 9.99 22.39 0.22 -8.76 16 26 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 27 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 28 H 0.13 3.77 8.03 -2.91 -0.02 3.74 16 29 H 0.04 0.97 7.76 -2.39 -0.02 0.95 16 30 H 0.09 1.98 7.61 -2.39 -0.02 1.96 16 31 H 0.06 1.55 6.86 -2.39 -0.02 1.53 16 32 H 0.04 0.76 6.35 -2.39 -0.02 0.74 16 33 H 0.07 1.34 7.08 -2.39 -0.02 1.32 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 0.82 7.51 -2.39 -0.02 0.80 16 37 H 0.08 0.74 8.09 -2.39 -0.02 0.73 16 38 H 0.07 0.91 7.51 -2.39 -0.02 0.90 16 39 H 0.39 2.89 9.04 -74.06 -0.67 2.22 16 40 H 0.08 1.54 6.58 -2.39 -0.02 1.53 16 41 H 0.07 1.54 7.39 -2.38 -0.02 1.52 16 42 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 43 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -71.56 337.17 0.02 -71.54 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.35 Total: 25.58 kcal Atomic # 6 Polarization: -46.75 SS G_CDS: 3.76 Total: -42.98 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -3.93 Total: -73.70 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -2.19 Total: -25.66 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.56 0.02 -71.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115280.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.332 kcal (2) G-P(sol) polarization free energy of solvation -71.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds