Wall clock time and date at job start Tue Mar 31 2020 08:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00121 * 2 1 4 4 H 1.48497 * 109.47095 * 270.00501 * 3 2 1 5 5 H 1.48500 * 109.47027 * 30.00619 * 3 2 1 6 6 H 1.48502 * 109.47127 * 150.00344 * 3 2 1 7 7 C 1.37872 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00029 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00487 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47587 * 174.35486 * 9 7 2 11 11 C 1.46898 * 111.00077 * 162.40966 * 10 9 7 12 12 C 1.50701 * 109.47402 * 190.00346 * 11 10 9 13 13 C 1.38180 * 119.94298 * 269.72822 * 12 11 10 14 14 C 1.38774 * 120.05083 * 179.76279 * 13 12 11 15 15 O 1.35900 * 120.02797 * 180.23152 * 14 13 12 16 16 C 1.38626 * 119.94668 * 0.53318 * 14 13 12 17 17 C 1.38640 * 119.89117 * 359.72296 * 16 14 13 18 18 O 1.35904 * 120.02545 * 179.97438 * 17 16 14 19 19 C 1.38169 * 119.94869 * 90.00077 * 12 11 10 20 20 C 1.46901 * 111.00537 * 286.37097 * 10 9 7 21 21 C 1.54898 * 110.47883 * 336.96170 * 20 10 9 22 22 C 1.55239 * 102.58211 * 156.67511 * 21 20 10 23 23 C 1.54266 * 104.23586 * 322.08704 * 22 21 20 24 24 C 1.53876 * 106.59886 * 23.61041 * 23 22 21 25 25 H 0.97002 * 119.99781 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46713 * 54.35269 * 9 7 2 27 27 H 1.09004 * 109.47369 * 294.36213 * 9 7 2 28 28 H 1.08999 * 109.47763 * 310.00225 * 11 10 9 29 29 H 1.09007 * 109.47181 * 70.00939 * 11 10 9 30 30 H 1.07994 * 119.97240 * 359.97438 * 13 12 11 31 31 H 0.96703 * 113.99925 * 270.30345 * 15 14 13 32 32 H 1.08009 * 120.05815 * 179.69554 * 16 14 13 33 33 H 0.96696 * 113.99464 * 270.01974 * 18 17 16 34 34 H 1.08005 * 119.96913 * 359.97438 * 19 12 11 35 35 H 1.08998 * 110.43257 * 214.42748 * 20 10 9 36 36 H 1.08999 * 110.75793 * 275.06490 * 21 20 10 37 37 H 1.08999 * 110.75822 * 38.44534 * 21 20 10 38 38 H 1.08999 * 110.46818 * 203.39351 * 22 21 20 39 39 H 1.09008 * 110.57760 * 80.83278 * 22 21 20 40 40 H 1.08996 * 110.02854 * 264.32641 * 23 22 21 41 41 H 1.09001 * 110.07542 * 142.91606 * 23 22 21 42 42 H 1.08999 * 110.03340 * 240.71968 * 24 23 22 43 43 H 1.08992 * 110.03181 * 119.28561 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.1997 -3.6123 -0.1374 11 6 1.5833 -4.8822 0.2691 12 6 2.6425 -5.9511 0.3515 13 6 2.9341 -6.7202 -0.7588 14 6 3.9125 -7.7017 -0.6868 15 8 4.2023 -8.4546 -1.7804 16 6 4.5897 -7.9178 0.5033 17 6 4.2915 -7.1484 1.6174 18 8 4.9534 -7.3582 2.7857 19 6 3.3164 -6.1642 1.5387 20 6 2.7204 -3.6948 -1.5085 21 6 1.7434 -3.0167 -2.5010 22 6 2.6690 -2.6572 -3.6943 23 6 3.9916 -2.2214 -3.0306 24 6 4.0243 -2.8812 -1.6408 25 1 -0.4850 0.8401 0.0004 26 1 0.5504 -2.5141 -0.8354 27 1 0.7026 -2.6021 0.9358 28 1 1.1122 -4.7618 1.2446 29 1 0.8310 -5.1722 -0.4645 30 1 2.4027 -6.5549 -1.6843 31 1 3.6728 -9.2604 -1.8547 32 1 5.3481 -8.6845 0.5627 33 1 4.5317 -8.0071 3.3655 34 1 3.0839 -5.5645 2.4063 35 1 2.8891 -4.7344 -1.7895 36 1 0.9627 -3.7117 -2.8102 37 1 1.3104 -2.1173 -2.0632 38 1 2.2440 -1.8368 -4.2726 39 1 2.8300 -3.5278 -4.3302 40 1 4.0189 -1.1365 -2.9296 41 1 4.8389 -2.5622 -3.6256 42 1 4.0674 -2.1164 -0.8653 43 1 4.8869 -3.5428 -1.5618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138328766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:51 Heat of formation + Delta-G solvation = -49.117369 kcal Electronic energy + Delta-G solvation = -24076.582181 eV Core-core repulsion = 20701.296331 eV Total energy + Delta-G solvation = -3375.285850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.12493 -38.49639 -37.80229 -36.10311 -34.24710 -32.60278 -30.68038 -29.30459 -27.99669 -27.23661 -27.07971 -24.21235 -22.56884 -21.98308 -21.25131 -19.64494 -18.76815 -18.19833 -17.14306 -16.49008 -16.22962 -16.19044 -15.47257 -15.10422 -14.96840 -14.45363 -14.17499 -13.93158 -13.27001 -13.07303 -12.80633 -12.58432 -12.15459 -12.03299 -11.78091 -11.62874 -11.24930 -10.93075 -10.84495 -10.74111 -10.66352 -10.50809 -10.45191 -10.27491 -10.25401 -10.07396 -9.50767 -9.25154 -8.94637 -8.61944 -8.46218 -8.38380 -7.15049 -6.01010 -4.00682 1.24157 1.29592 3.32676 3.39549 3.43609 3.50614 3.98858 4.35860 4.44864 4.91339 5.00410 5.16462 5.24615 5.33675 5.39159 5.45068 5.50850 5.58110 5.70530 5.85479 5.96703 6.07325 6.14020 6.26382 6.29482 6.33192 6.35758 6.41152 6.48104 6.57539 6.65409 6.68394 6.70473 6.77348 7.01787 7.05431 7.15918 7.38130 7.50219 7.52180 7.66978 7.94518 8.14313 8.21582 8.55932 9.08683 9.62995 11.09070 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.004889 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.981001 B = 5725.211808 C = 6427.894281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.496 4.496 8 H 0.070 0.930 9 C 0.181 3.819 10 N -0.524 5.524 11 C 0.088 3.912 12 C -0.027 4.027 13 C -0.148 4.148 14 C 0.116 3.884 15 O -0.498 6.498 16 C -0.181 4.181 17 C 0.117 3.883 18 O -0.497 6.497 19 C -0.130 4.130 20 C 0.089 3.911 21 C -0.164 4.164 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.114 4.114 25 H 0.260 0.740 26 H 0.017 0.983 27 H 0.021 0.979 28 H 0.080 0.920 29 H 0.034 0.966 30 H 0.128 0.872 31 H 0.387 0.613 32 H 0.129 0.871 33 H 0.387 0.613 34 H 0.134 0.866 35 H 0.062 0.938 36 H 0.042 0.958 37 H 0.123 0.877 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.047 0.953 42 H 0.093 0.907 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.198 -15.962 -1.038 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.534 4.534 8 H 0.088 0.912 9 C 0.057 3.943 10 N -0.247 5.247 11 C -0.040 4.040 12 C -0.028 4.028 13 C -0.167 4.167 14 C 0.072 3.928 15 O -0.307 6.307 16 C -0.200 4.200 17 C 0.072 3.928 18 O -0.307 6.307 19 C -0.149 4.149 20 C -0.020 4.020 21 C -0.202 4.202 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.151 4.151 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.039 0.961 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.146 0.854 31 H 0.242 0.758 32 H 0.146 0.854 33 H 0.243 0.757 34 H 0.151 0.849 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.141 0.859 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.235 -14.871 -1.037 15.799 hybrid contribution -0.814 0.039 -0.335 0.881 sum 4.421 -14.831 -1.371 15.537 Atomic orbital electron populations 1.69950 1.05942 1.26628 1.51533 1.24946 0.94771 0.99049 0.95740 0.86613 0.79953 0.83559 0.78062 1.20764 1.21419 1.19791 1.21257 0.93725 0.89456 1.48981 0.91200 1.20058 0.90385 0.87419 0.96475 1.62315 1.38313 1.01734 1.22339 1.21086 0.92349 0.89406 1.01202 1.19738 0.96497 0.94570 0.91986 1.21389 0.98851 0.97489 0.98965 1.18151 0.95118 0.93871 0.85701 1.84853 1.64537 1.38495 1.42848 1.21536 1.03079 1.02682 0.92709 1.18213 0.92829 0.95633 0.86098 1.84856 1.51850 1.65090 1.28872 1.21358 0.95786 0.98419 0.99367 1.22438 0.94711 0.97402 0.87457 1.23482 0.97338 1.03607 0.95797 1.22250 0.96217 0.99558 0.97453 1.22029 0.96476 1.00595 0.96468 1.22267 0.95887 0.99690 0.97291 0.93050 0.96528 0.96134 0.90152 0.94761 0.85386 0.75782 0.85352 0.75732 0.84859 0.91963 0.93923 0.85936 0.92604 0.93271 0.92079 0.93417 0.88880 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16 2 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.50 -13.11 7.41 -34.44 -0.26 -13.37 16 8 H 0.07 1.87 5.20 -52.48 -0.27 1.59 16 9 C 0.18 4.41 4.27 -4.98 -0.02 4.39 16 10 N -0.52 -10.79 4.34 -227.53 -0.99 -11.78 16 11 C 0.09 1.51 5.07 -4.98 -0.03 1.48 16 12 C -0.03 -0.41 5.02 -104.67 -0.53 -0.94 16 13 C -0.15 -2.10 8.02 -39.40 -0.32 -2.41 16 14 C 0.12 1.52 6.70 -39.24 -0.26 1.26 16 15 O -0.50 -5.69 13.50 -19.43 -0.26 -5.95 16 16 C -0.18 -2.31 9.93 -39.29 -0.39 -2.70 16 17 C 0.12 1.56 6.70 -39.24 -0.26 1.30 16 18 O -0.50 -5.85 13.50 -19.44 -0.26 -6.11 16 19 C -0.13 -1.91 9.63 -39.41 -0.38 -2.29 16 20 C 0.09 1.71 2.69 -66.05 -0.18 1.53 16 21 C -0.16 -3.23 5.28 -24.54 -0.13 -3.36 16 22 C -0.12 -2.03 6.84 -24.88 -0.17 -2.20 16 23 C -0.12 -2.10 6.80 -25.61 -0.17 -2.27 16 24 C -0.11 -2.22 6.17 -25.61 -0.16 -2.38 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.02 0.44 5.38 -51.93 -0.28 0.16 16 27 H 0.02 0.54 7.78 -51.93 -0.40 0.14 16 28 H 0.08 1.35 7.79 -51.93 -0.40 0.95 16 29 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 30 H 0.13 1.76 7.18 -52.49 -0.38 1.39 16 31 H 0.39 2.33 9.06 45.56 0.41 2.74 16 32 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.39 2.42 9.06 45.56 0.41 2.83 16 34 H 0.13 1.93 8.06 -52.48 -0.42 1.50 16 35 H 0.06 1.13 4.65 -51.93 -0.24 0.89 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.12 2.89 4.53 -51.93 -0.24 2.66 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 2.06 5.08 -51.93 -0.26 1.79 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -31.01 338.53 -8.63 -39.64 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -4.59 Total: 8.33 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -3.35 Total: -20.53 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.25 Total: -36.77 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.52 Total: -12.06 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.01 -8.63 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138328766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.482 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds