Wall clock time and date at job start Tue Mar 31 2020 08:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00121 * 2 1 4 4 H 1.48497 * 109.47095 * 270.00501 * 3 2 1 5 5 H 1.48500 * 109.47027 * 30.00619 * 3 2 1 6 6 H 1.48502 * 109.47127 * 150.00344 * 3 2 1 7 7 C 1.37872 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00029 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00487 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47587 * 174.35486 * 9 7 2 11 11 C 1.46898 * 111.00077 * 162.40966 * 10 9 7 12 12 C 1.50701 * 109.47402 * 190.00346 * 11 10 9 13 13 C 1.38180 * 119.94298 * 269.72822 * 12 11 10 14 14 C 1.38774 * 120.05083 * 179.76279 * 13 12 11 15 15 O 1.35900 * 120.02797 * 180.23152 * 14 13 12 16 16 C 1.38626 * 119.94668 * 0.53318 * 14 13 12 17 17 C 1.38640 * 119.89117 * 359.72296 * 16 14 13 18 18 O 1.35904 * 120.02545 * 179.97438 * 17 16 14 19 19 C 1.38169 * 119.94869 * 90.00077 * 12 11 10 20 20 C 1.46901 * 111.00537 * 286.37097 * 10 9 7 21 21 C 1.54898 * 110.47883 * 336.96170 * 20 10 9 22 22 C 1.55239 * 102.58211 * 156.67511 * 21 20 10 23 23 C 1.54266 * 104.23586 * 322.08704 * 22 21 20 24 24 C 1.53876 * 106.59886 * 23.61041 * 23 22 21 25 25 H 0.97002 * 119.99781 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46713 * 54.35269 * 9 7 2 27 27 H 1.09004 * 109.47369 * 294.36213 * 9 7 2 28 28 H 1.08999 * 109.47763 * 310.00225 * 11 10 9 29 29 H 1.09007 * 109.47181 * 70.00939 * 11 10 9 30 30 H 1.07994 * 119.97240 * 359.97438 * 13 12 11 31 31 H 0.96703 * 113.99925 * 270.30345 * 15 14 13 32 32 H 1.08009 * 120.05815 * 179.69554 * 16 14 13 33 33 H 0.96696 * 113.99464 * 270.01974 * 18 17 16 34 34 H 1.08005 * 119.96913 * 359.97438 * 19 12 11 35 35 H 1.08998 * 110.43257 * 214.42748 * 20 10 9 36 36 H 1.08999 * 110.75793 * 275.06490 * 21 20 10 37 37 H 1.08999 * 110.75822 * 38.44534 * 21 20 10 38 38 H 1.08999 * 110.46818 * 203.39351 * 22 21 20 39 39 H 1.09008 * 110.57760 * 80.83278 * 22 21 20 40 40 H 1.08996 * 110.02854 * 264.32641 * 23 22 21 41 41 H 1.09001 * 110.07542 * 142.91606 * 23 22 21 42 42 H 1.08999 * 110.03340 * 240.71968 * 24 23 22 43 43 H 1.08992 * 110.03181 * 119.28561 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.1997 -3.6123 -0.1374 11 6 1.5833 -4.8822 0.2691 12 6 2.6425 -5.9511 0.3515 13 6 2.9341 -6.7202 -0.7588 14 6 3.9125 -7.7017 -0.6868 15 8 4.2023 -8.4546 -1.7804 16 6 4.5897 -7.9178 0.5033 17 6 4.2915 -7.1484 1.6174 18 8 4.9534 -7.3582 2.7857 19 6 3.3164 -6.1642 1.5387 20 6 2.7204 -3.6948 -1.5085 21 6 1.7434 -3.0167 -2.5010 22 6 2.6690 -2.6572 -3.6943 23 6 3.9916 -2.2214 -3.0306 24 6 4.0243 -2.8812 -1.6408 25 1 -0.4850 0.8401 0.0004 26 1 0.5504 -2.5141 -0.8354 27 1 0.7026 -2.6021 0.9358 28 1 1.1122 -4.7618 1.2446 29 1 0.8310 -5.1722 -0.4645 30 1 2.4027 -6.5549 -1.6843 31 1 3.6728 -9.2604 -1.8547 32 1 5.3481 -8.6845 0.5627 33 1 4.5317 -8.0071 3.3655 34 1 3.0839 -5.5645 2.4063 35 1 2.8891 -4.7344 -1.7895 36 1 0.9627 -3.7117 -2.8102 37 1 1.3104 -2.1173 -2.0632 38 1 2.2440 -1.8368 -4.2726 39 1 2.8300 -3.5278 -4.3302 40 1 4.0189 -1.1365 -2.9296 41 1 4.8389 -2.5622 -3.6256 42 1 4.0674 -2.1164 -0.8653 43 1 4.8869 -3.5428 -1.5618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138328766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:50 Heat of formation + Delta-G solvation = -71.694085 kcal Electronic energy + Delta-G solvation = -24077.561181 eV Core-core repulsion = 20701.296331 eV Total energy + Delta-G solvation = -3376.264849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = -4.67 seconds Orbital eigenvalues (eV) -41.21685 -39.97348 -38.71320 -37.21956 -35.76007 -34.51527 -31.96430 -30.35639 -29.54015 -29.06117 -28.48370 -25.80447 -23.84407 -23.49951 -22.40973 -21.13113 -20.17646 -19.42793 -18.41171 -18.05714 -17.30155 -17.27475 -16.97948 -16.72863 -16.18373 -16.13666 -15.49046 -15.14303 -14.71694 -14.67048 -14.15365 -13.96634 -13.70431 -13.41066 -13.17257 -12.92047 -12.85237 -12.67401 -12.52566 -12.35366 -12.06037 -11.92713 -11.76621 -11.71287 -11.62812 -11.59996 -11.21040 -10.94525 -10.74416 -10.48481 -9.70805 -9.49786 -8.82838 -8.10896 -6.16381 0.21582 0.24355 1.40801 1.42236 1.52176 2.42294 2.51461 3.02023 3.21849 3.41445 3.48370 3.81010 3.91295 3.96421 4.13346 4.18099 4.23786 4.33780 4.44556 4.54002 4.69476 4.72846 4.79370 4.88313 4.90337 4.92705 4.96818 5.05071 5.19089 5.21370 5.30293 5.32346 5.33406 5.37932 5.53015 5.56610 5.60996 5.73922 5.74584 5.91563 6.21822 6.47780 6.73727 6.82365 6.90521 7.00410 7.51155 8.98725 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.004889 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.981001 B = 5725.211808 C = 6427.894281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.008 3.992 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.496 4.496 8 H 0.066 0.934 9 C 0.197 3.803 10 N -0.533 5.533 11 C 0.089 3.911 12 C -0.036 4.036 13 C -0.156 4.156 14 C 0.127 3.873 15 O -0.504 6.504 16 C -0.179 4.179 17 C 0.124 3.876 18 O -0.506 6.506 19 C -0.147 4.147 20 C 0.091 3.909 21 C -0.164 4.164 22 C -0.111 4.111 23 C -0.115 4.115 24 C -0.114 4.114 25 H 0.260 0.740 26 H 0.001 0.999 27 H -0.007 1.007 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.132 0.868 31 H 0.412 0.588 32 H 0.148 0.852 33 H 0.412 0.588 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.010 -17.694 -2.081 18.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.535 4.535 8 H 0.084 0.916 9 C 0.072 3.928 10 N -0.256 5.256 11 C -0.038 4.038 12 C -0.037 4.037 13 C -0.175 4.175 14 C 0.082 3.918 15 O -0.317 6.317 16 C -0.198 4.198 17 C 0.079 3.921 18 O -0.320 6.320 19 C -0.167 4.167 20 C -0.017 4.017 21 C -0.202 4.202 22 C -0.149 4.149 23 C -0.153 4.153 24 C -0.152 4.152 25 H 0.069 0.931 26 H 0.019 0.981 27 H 0.011 0.989 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.149 0.851 31 H 0.272 0.728 32 H 0.166 0.834 33 H 0.271 0.729 34 H 0.143 0.857 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.045 -16.647 -2.071 18.195 hybrid contribution -1.346 0.427 0.027 1.412 sum 5.699 -16.220 -2.044 17.314 Atomic orbital electron populations 1.70062 1.07279 1.27257 1.52923 1.25652 0.95445 1.02128 0.95687 0.85701 0.78779 0.79915 0.78208 1.20128 1.21216 1.19437 1.21498 0.93603 0.90528 1.47835 0.91636 1.19707 0.90356 0.88470 0.94279 1.62189 1.37533 1.02287 1.23596 1.21062 0.93299 0.88608 1.00859 1.19479 0.96577 0.94644 0.92999 1.21400 0.99571 0.97963 0.98602 1.18120 0.94123 0.93449 0.86110 1.84789 1.65209 1.39711 1.42011 1.21735 1.03171 1.02760 0.92181 1.18195 0.91954 0.94952 0.86973 1.84791 1.52084 1.66244 1.28837 1.21373 0.96871 0.99394 0.99019 1.22491 0.94373 0.98339 0.86505 1.23327 0.98050 1.01902 0.96914 1.22244 0.95165 1.00745 0.96709 1.22021 0.97841 0.99646 0.95827 1.22226 0.96391 0.99094 0.97458 0.93125 0.98110 0.98929 0.90762 0.94302 0.85069 0.72832 0.83379 0.72863 0.85657 0.90067 0.93035 0.90233 0.92493 0.90492 0.93491 0.90571 0.92012 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.00 13.29 21.45 0.28 -54.72 16 2 C 0.01 0.46 5.46 84.65 0.46 0.93 16 3 Si 0.95 44.49 29.54 68.60 2.03 46.51 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.50 -27.10 7.41 25.60 0.19 -26.91 16 8 H 0.07 3.60 5.20 -2.91 -0.02 3.59 16 9 C 0.20 10.05 4.27 85.56 0.37 10.42 16 10 N -0.53 -22.46 4.34 -873.77 -3.80 -26.26 16 11 C 0.09 3.13 5.07 85.56 0.43 3.57 16 12 C -0.04 -1.08 5.02 -19.89 -0.10 -1.18 16 13 C -0.16 -4.14 8.02 22.38 0.18 -3.96 16 14 C 0.13 2.96 6.70 22.49 0.15 3.11 16 15 O -0.50 -9.70 13.50 -92.42 -1.25 -10.95 16 16 C -0.18 -4.04 9.93 22.46 0.22 -3.82 16 17 C 0.12 3.07 6.70 22.49 0.15 3.22 16 18 O -0.51 -10.78 13.50 -92.47 -1.25 -12.03 16 19 C -0.15 -4.23 9.63 22.38 0.22 -4.01 16 20 C 0.09 3.48 2.69 45.99 0.12 3.61 16 21 C -0.16 -6.41 5.28 32.01 0.17 -6.24 16 22 C -0.11 -3.65 6.84 31.79 0.22 -3.44 16 23 C -0.12 -3.91 6.80 31.32 0.21 -3.70 16 24 C -0.11 -4.35 6.17 31.32 0.19 -4.16 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.00 0.07 5.38 -2.39 -0.01 0.06 16 27 H -0.01 -0.41 7.78 -2.38 -0.02 -0.42 16 28 H 0.07 2.63 7.79 -2.39 -0.02 2.61 16 29 H 0.04 1.31 8.06 -2.38 -0.02 1.29 16 30 H 0.13 3.33 7.18 -2.91 -0.02 3.31 16 31 H 0.41 3.40 9.06 -74.06 -0.67 2.72 16 32 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.41 4.13 9.06 -74.06 -0.67 3.46 16 34 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 35 H 0.08 2.80 4.65 -2.39 -0.01 2.79 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 37 H 0.08 3.88 4.53 -2.39 -0.01 3.86 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.06 2.76 5.08 -2.39 -0.01 2.75 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -67.34 338.53 -1.09 -68.43 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -0.29 Total: 21.60 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 3.19 Total: -32.59 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -3.51 Total: -80.98 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -2.50 Total: -22.98 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -67.34 -1.09 -68.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138328766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.267 kcal (2) G-P(sol) polarization free energy of solvation -67.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -4.67 seconds