Wall clock time and date at job start Tue Mar 31 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47615 * 2 1 4 4 C 1.52995 * 109.47247 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47067 * 180.02562 * 4 3 2 6 6 C 1.36936 * 120.00028 * 269.99940 * 5 4 3 7 7 H 1.07996 * 120.00005 * 323.21918 * 6 5 4 8 8 C 1.38816 * 120.00205 * 143.21605 * 6 5 4 9 9 N 1.31618 * 119.99967 * 156.86583 * 8 6 5 10 10 Si 1.86801 * 119.99934 * 336.86892 * 8 6 5 11 11 H 1.48505 * 109.46901 * 95.41009 * 10 8 6 12 12 H 1.48493 * 109.47023 * 215.41006 * 10 8 6 13 13 H 1.48497 * 109.46953 * 335.41415 * 10 8 6 14 14 C 1.46501 * 120.00230 * 89.99854 * 5 4 3 15 15 C 1.50696 * 109.47304 * 89.28893 * 14 5 4 16 16 C 1.35028 * 125.67829 * 95.36979 * 15 14 5 17 17 N 1.37006 * 107.17294 * 180.02562 * 16 15 14 18 18 C 1.37105 * 106.98512 * 0.02562 * 17 16 15 19 19 C 1.40876 * 119.66276 * 180.02562 * 18 17 16 20 20 C 1.36105 * 119.37664 * 359.97438 * 19 18 17 21 21 C 1.40298 * 119.71855 * 0.02562 * 20 19 18 22 22 C 1.35378 * 120.26031 * 359.95817 * 21 20 19 23 23 F 1.35095 * 119.72562 * 180.02562 * 22 21 20 24 24 N 1.32584 * 108.01598 * 359.97438 * 18 17 16 25 25 H 1.08998 * 109.47191 * 59.99888 * 1 2 3 26 26 H 1.08997 * 109.47347 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46732 * 299.99798 * 1 2 3 28 28 H 1.08998 * 109.46819 * 240.00173 * 2 1 3 29 29 H 1.08999 * 109.46712 * 120.00341 * 2 1 3 30 30 H 1.09000 * 109.47141 * 59.99732 * 3 2 1 31 31 H 1.09007 * 109.47046 * 300.00492 * 3 2 1 32 32 H 1.08998 * 109.47252 * 60.00134 * 4 3 2 33 33 H 1.08998 * 109.47126 * 299.99847 * 4 3 2 34 34 H 0.97002 * 119.99810 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47142 * 329.29222 * 14 5 4 36 36 H 1.08998 * 109.47157 * 209.29253 * 14 5 4 37 37 H 1.08006 * 126.41359 * 0.02562 * 16 15 14 38 38 H 1.07995 * 120.30967 * 179.72147 * 19 18 17 39 39 H 1.08005 * 120.13985 * 179.97438 * 20 19 18 40 40 H 1.07997 * 119.86989 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.2863 3.4697 -1.1856 7 1 4.6876 2.9265 -2.0283 8 6 4.0012 4.8231 -1.3044 9 7 4.6073 5.5451 -2.2229 10 14 2.7575 5.6196 -0.1606 11 1 3.4670 6.2408 0.9866 12 1 2.0027 6.6631 -0.8997 13 1 1.8144 4.5878 0.3406 14 6 4.3032 3.5134 1.2690 15 6 5.7214 3.2620 1.7121 16 6 6.7744 4.0752 1.4818 17 7 7.8736 3.4836 2.0465 18 6 7.4499 2.3088 2.6123 19 6 8.3768 1.4794 3.2737 20 6 9.6824 1.8579 3.3407 21 6 10.0875 3.0655 2.7526 22 6 9.1858 3.8524 2.1198 23 9 9.5878 5.0128 1.5569 24 7 6.1463 2.1970 2.3975 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9286 -0.8908 33 1 3.9337 0.9284 0.8891 34 1 4.4084 6.4909 -2.3057 35 1 3.6142 3.1378 2.0255 36 1 4.1485 4.5841 1.1362 37 1 6.7540 5.0159 0.9515 38 1 8.0536 0.5540 3.7270 39 1 10.4034 1.2316 3.8451 40 1 11.1228 3.3684 2.8046 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139574069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:39 Heat of formation + Delta-G solvation = 64.961817 kcal Electronic energy + Delta-G solvation = -23170.466602 eV Core-core repulsion = 19708.960043 eV Total energy + Delta-G solvation = -3461.506559 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.31010 -42.39667 -37.43175 -36.26943 -34.09716 -33.27903 -31.64231 -30.41331 -28.87887 -27.99552 -26.19537 -24.05015 -22.99831 -22.75354 -21.21617 -20.60630 -19.72286 -18.26626 -17.40966 -16.83428 -16.60969 -16.12229 -15.37081 -15.18861 -14.77398 -14.75112 -14.25475 -14.09107 -13.67142 -13.56798 -12.97186 -12.79078 -12.47109 -12.30874 -12.12211 -12.01853 -11.95591 -11.35533 -11.20537 -10.84612 -10.81012 -10.64406 -10.49748 -10.32266 -10.11525 -9.82583 -9.72520 -9.54379 -8.56525 -8.45170 -7.55249 -6.90722 -6.03897 -3.42541 0.68175 1.38219 2.41187 3.10300 3.27176 3.45025 3.50778 3.66387 4.04178 4.38204 4.48264 4.60663 4.85240 5.04033 5.09400 5.23376 5.41719 5.51315 5.57723 5.60792 5.69369 5.82041 5.86571 5.98363 6.05055 6.07898 6.18044 6.27990 6.36988 6.38254 6.41430 6.46455 6.59934 6.61579 6.69204 6.97485 7.02525 7.15817 7.19560 8.00955 8.22827 8.37539 8.94324 9.66911 10.09018 11.11534 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.005463 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.017661 B = 5124.357567 C = 6534.353274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.138 4.138 4 C 0.152 3.848 5 N -0.592 5.592 6 C -0.263 4.263 7 H 0.078 0.922 8 C 0.037 3.963 9 N -0.896 5.896 10 Si 0.866 3.134 11 H -0.285 1.285 12 H -0.300 1.300 13 H -0.262 1.262 14 C 0.207 3.793 15 C 0.074 3.926 16 C -0.072 4.072 17 N -0.391 5.391 18 C 0.225 3.775 19 C -0.080 4.080 20 C -0.097 4.097 21 C -0.177 4.177 22 C 0.272 3.728 23 F -0.112 7.112 24 N -0.474 5.474 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.184 0.816 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 -7.054 11.221 14.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.178 4.178 4 C 0.026 3.974 5 N -0.312 5.312 6 C -0.392 4.392 7 H 0.096 0.904 8 C -0.164 4.164 9 N -0.537 5.537 10 Si 0.696 3.304 11 H -0.213 1.213 12 H -0.228 1.228 13 H -0.187 1.187 14 C 0.080 3.920 15 C -0.059 4.059 16 C -0.202 4.202 17 N -0.070 5.070 18 C -0.017 4.017 19 C -0.101 4.101 20 C -0.121 4.121 21 C -0.200 4.200 22 C 0.150 3.850 23 F -0.090 7.090 24 N -0.195 5.195 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.201 0.799 38 H 0.170 0.830 39 H 0.164 0.836 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.867 -7.433 11.266 14.717 hybrid contribution 0.023 1.724 -0.065 1.725 sum 5.890 -5.709 11.201 13.883 Atomic orbital electron populations 1.21768 0.96757 1.00578 1.01594 1.21490 0.95059 0.98154 1.01282 1.22192 0.99029 0.94740 1.01864 1.20932 0.91096 0.85817 0.99526 1.44107 1.74025 1.11806 1.01236 1.18802 1.37361 0.92826 0.90192 0.90417 1.25440 0.97762 0.96695 0.96494 1.69892 1.40801 1.06843 1.36162 0.87090 0.84035 0.79114 0.80180 1.21298 1.22757 1.18651 1.19779 0.86353 0.97480 0.88408 1.22380 0.99006 0.89453 0.95037 1.22785 0.84126 1.04182 1.09092 1.43410 1.05763 1.19274 1.38599 1.21014 0.91992 0.86768 1.01921 1.20254 0.90933 0.99491 0.99380 1.20705 0.95675 0.95679 1.00002 1.20441 0.99357 0.96401 1.03831 1.17368 0.83164 0.84858 0.99589 1.91640 1.88974 1.45343 1.83079 1.70727 1.05182 1.24180 1.19452 0.92929 0.93539 0.93169 0.92426 0.92630 0.93149 0.91796 0.93341 0.93513 0.92683 0.92137 0.91240 0.79899 0.82992 0.83558 0.82602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.81 5.93 -26.73 -0.16 -1.97 16 3 C -0.14 -2.57 5.54 -26.74 -0.15 -2.72 16 4 C 0.15 3.14 5.67 -4.04 -0.02 3.11 16 5 N -0.59 -14.12 2.07 -174.61 -0.36 -14.48 16 6 C -0.26 -7.24 9.92 -15.06 -0.15 -7.39 16 7 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 8 C 0.04 1.03 5.29 -17.43 -0.09 0.94 16 9 N -0.90 -26.71 13.97 55.49 0.78 -25.94 16 10 Si 0.87 21.46 25.07 -169.99 -4.26 17.20 16 11 H -0.28 -6.82 6.66 56.52 0.38 -6.44 16 12 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 13 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 14 C 0.21 4.65 5.02 -5.19 -0.03 4.63 16 15 C 0.07 1.61 6.64 -82.98 -0.55 1.06 16 16 C -0.07 -1.51 11.61 -16.38 -0.19 -1.70 16 17 N -0.39 -7.12 2.95 -63.03 -0.19 -7.31 16 18 C 0.23 3.98 7.81 -156.02 -1.22 2.77 16 19 C -0.08 -1.02 10.10 -39.35 -0.40 -1.42 16 20 C -0.10 -0.97 10.06 -39.57 -0.40 -1.37 16 21 C -0.18 -1.97 9.95 -39.83 -0.40 -2.36 16 22 C 0.27 4.10 8.24 -16.49 -0.14 3.97 16 23 F -0.11 -1.71 17.20 2.25 0.04 -1.67 16 24 N -0.47 -9.64 11.32 -9.01 -0.10 -9.74 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 32 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 33 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 35 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 36 H 0.07 1.64 3.26 -51.93 -0.17 1.47 16 37 H 0.18 3.84 8.06 -52.48 -0.42 3.42 16 38 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 338.18 15.07 5.10 5.10 Total: -1.00 -31.26 338.18 -8.18 -39.43 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.66 Total: 1.47 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -3.52 Total: -4.06 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.12 Total: -57.47 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.26 Total: 17.20 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.26 -8.18 -39.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139574069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.395 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds