Wall clock time and date at job start Tue Mar 31 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47615 * 2 1 4 4 C 1.52995 * 109.47247 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47067 * 180.02562 * 4 3 2 6 6 C 1.36936 * 120.00028 * 269.99940 * 5 4 3 7 7 H 1.07996 * 120.00005 * 323.21918 * 6 5 4 8 8 C 1.38816 * 120.00205 * 143.21605 * 6 5 4 9 9 N 1.31618 * 119.99967 * 156.86583 * 8 6 5 10 10 Si 1.86801 * 119.99934 * 336.86892 * 8 6 5 11 11 H 1.48505 * 109.46901 * 95.41009 * 10 8 6 12 12 H 1.48493 * 109.47023 * 215.41006 * 10 8 6 13 13 H 1.48497 * 109.46953 * 335.41415 * 10 8 6 14 14 C 1.46501 * 120.00230 * 89.99854 * 5 4 3 15 15 C 1.50696 * 109.47304 * 89.28893 * 14 5 4 16 16 C 1.35028 * 125.67829 * 95.36979 * 15 14 5 17 17 N 1.37006 * 107.17294 * 180.02562 * 16 15 14 18 18 C 1.37105 * 106.98512 * 0.02562 * 17 16 15 19 19 C 1.40876 * 119.66276 * 180.02562 * 18 17 16 20 20 C 1.36105 * 119.37664 * 359.97438 * 19 18 17 21 21 C 1.40298 * 119.71855 * 0.02562 * 20 19 18 22 22 C 1.35378 * 120.26031 * 359.95817 * 21 20 19 23 23 F 1.35095 * 119.72562 * 180.02562 * 22 21 20 24 24 N 1.32584 * 108.01598 * 359.97438 * 18 17 16 25 25 H 1.08998 * 109.47191 * 59.99888 * 1 2 3 26 26 H 1.08997 * 109.47347 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46732 * 299.99798 * 1 2 3 28 28 H 1.08998 * 109.46819 * 240.00173 * 2 1 3 29 29 H 1.08999 * 109.46712 * 120.00341 * 2 1 3 30 30 H 1.09000 * 109.47141 * 59.99732 * 3 2 1 31 31 H 1.09007 * 109.47046 * 300.00492 * 3 2 1 32 32 H 1.08998 * 109.47252 * 60.00134 * 4 3 2 33 33 H 1.08998 * 109.47126 * 299.99847 * 4 3 2 34 34 H 0.97002 * 119.99810 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47142 * 329.29222 * 14 5 4 36 36 H 1.08998 * 109.47157 * 209.29253 * 14 5 4 37 37 H 1.08006 * 126.41359 * 0.02562 * 16 15 14 38 38 H 1.07995 * 120.30967 * 179.72147 * 19 18 17 39 39 H 1.08005 * 120.13985 * 179.97438 * 20 19 18 40 40 H 1.07997 * 119.86989 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.2863 3.4697 -1.1856 7 1 4.6876 2.9265 -2.0283 8 6 4.0012 4.8231 -1.3044 9 7 4.6073 5.5451 -2.2229 10 14 2.7575 5.6196 -0.1606 11 1 3.4670 6.2408 0.9866 12 1 2.0027 6.6631 -0.8997 13 1 1.8144 4.5878 0.3406 14 6 4.3032 3.5134 1.2690 15 6 5.7214 3.2620 1.7121 16 6 6.7744 4.0752 1.4818 17 7 7.8736 3.4836 2.0465 18 6 7.4499 2.3088 2.6123 19 6 8.3768 1.4794 3.2737 20 6 9.6824 1.8579 3.3407 21 6 10.0875 3.0655 2.7526 22 6 9.1858 3.8524 2.1198 23 9 9.5878 5.0128 1.5569 24 7 6.1463 2.1970 2.3975 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9286 -0.8908 33 1 3.9337 0.9284 0.8891 34 1 4.4084 6.4909 -2.3057 35 1 3.6142 3.1378 2.0255 36 1 4.1485 4.5841 1.1362 37 1 6.7540 5.0159 0.9515 38 1 8.0536 0.5540 3.7270 39 1 10.4034 1.2316 3.8451 40 1 11.1228 3.3684 2.8046 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139574069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:35 Heat of formation + Delta-G solvation = 47.444931 kcal Electronic energy + Delta-G solvation = -23171.226191 eV Core-core repulsion = 19708.960043 eV Total energy + Delta-G solvation = -3462.266148 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -50.44654 -43.73748 -38.85129 -37.77174 -35.56654 -34.56082 -33.66646 -31.78057 -30.16156 -29.45222 -27.90555 -25.74607 -24.22651 -23.96385 -22.76102 -22.03860 -21.37464 -19.57922 -18.80368 -18.47211 -17.86672 -17.49215 -17.01722 -16.40683 -16.26321 -16.09562 -15.73449 -15.58163 -15.13649 -14.92676 -14.70979 -14.34747 -14.21172 -13.62284 -13.44254 -13.29577 -13.08742 -12.88420 -12.71726 -12.46933 -12.17965 -12.09600 -12.02858 -11.88325 -11.74500 -11.54035 -11.29506 -11.23340 -10.68670 -9.80265 -8.90045 -8.82521 -8.23465 -5.60158 -0.40348 0.20951 1.19079 1.26478 1.38497 1.50854 1.68877 2.38481 2.44053 2.90526 3.04635 3.16990 3.40787 3.45156 3.79548 4.08599 4.14809 4.20036 4.21173 4.31101 4.41853 4.49403 4.55508 4.62957 4.73572 4.86267 4.90967 4.98377 4.99746 5.05604 5.08413 5.14666 5.18803 5.40201 5.49069 5.51016 5.52334 5.60569 5.88858 5.92529 6.13981 6.79432 6.91984 7.57081 8.01808 8.96238 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.005463 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.017661 B = 5124.357567 C = 6534.353274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.129 4.129 4 C 0.153 3.847 5 N -0.602 5.602 6 C -0.253 4.253 7 H 0.036 0.964 8 C -0.010 4.010 9 N -0.943 5.943 10 Si 0.928 3.072 11 H -0.274 1.274 12 H -0.305 1.305 13 H -0.250 1.250 14 C 0.210 3.790 15 C 0.059 3.941 16 C -0.110 4.110 17 N -0.397 5.397 18 C 0.226 3.774 19 C -0.096 4.096 20 C -0.060 4.060 21 C -0.139 4.139 22 C 0.223 3.777 23 F -0.122 7.122 24 N -0.507 5.507 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.057 0.943 34 H 0.263 0.737 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.163 0.837 38 H 0.182 0.818 39 H 0.207 0.793 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 -9.380 14.417 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.169 4.169 4 C 0.029 3.971 5 N -0.323 5.323 6 C -0.383 4.383 7 H 0.053 0.947 8 C -0.207 4.207 9 N -0.587 5.587 10 Si 0.756 3.244 11 H -0.201 1.201 12 H -0.233 1.233 13 H -0.174 1.174 14 C 0.083 3.917 15 C -0.074 4.074 16 C -0.240 4.240 17 N -0.076 5.076 18 C -0.017 4.017 19 C -0.116 4.116 20 C -0.083 4.083 21 C -0.161 4.161 22 C 0.103 3.897 23 F -0.101 7.101 24 N -0.229 5.229 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.180 0.820 38 H 0.199 0.801 39 H 0.224 0.776 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 7.550 -9.777 14.494 19.044 hybrid contribution -0.130 2.288 -0.945 2.479 sum 7.419 -7.489 13.550 17.168 Atomic orbital electron populations 1.21744 0.95135 1.02089 1.01479 1.21440 0.96435 0.95377 1.02121 1.22051 0.97051 0.97239 1.00540 1.20991 0.92668 0.84087 0.99369 1.44162 1.74861 1.12680 1.00567 1.18561 1.36244 0.92833 0.90652 0.94661 1.25942 0.99202 0.97200 0.98391 1.70008 1.42654 1.07164 1.38872 0.86081 0.81547 0.78217 0.78531 1.20148 1.23313 1.17351 1.19657 0.87766 0.96375 0.87901 1.22037 0.98456 0.90577 0.96353 1.22430 0.85718 1.04419 1.11400 1.43441 1.06452 1.19323 1.38364 1.21874 0.91999 0.86817 1.01029 1.20820 0.91236 1.00074 0.99476 1.21468 0.95345 0.94679 0.96782 1.21268 1.00417 0.95088 0.99305 1.18128 0.82726 0.86211 1.02623 1.91610 1.88811 1.46083 1.83626 1.70620 1.07025 1.24122 1.21098 0.93530 0.91214 0.92862 0.92167 0.91216 0.93284 0.94188 0.94524 0.92467 0.92765 0.90547 0.92855 0.81956 0.80068 0.77584 0.78089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.91 71.98 0.71 -2.88 16 2 C -0.12 -3.29 5.93 30.59 0.18 -3.11 16 3 C -0.13 -4.79 5.54 30.59 0.17 -4.62 16 4 C 0.15 6.49 5.67 86.38 0.49 6.98 16 5 N -0.60 -29.88 2.07 -706.36 -1.46 -31.35 16 6 C -0.25 -14.78 9.92 84.03 0.83 -13.95 16 7 H 0.04 2.32 8.06 -2.91 -0.02 2.29 16 8 C -0.01 -0.61 5.29 84.86 0.45 -0.17 16 9 N -0.94 -59.44 13.97 21.65 0.30 -59.14 16 10 Si 0.93 46.29 25.07 68.60 1.72 48.01 16 11 H -0.27 -13.08 6.66 99.48 0.66 -12.42 16 12 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 13 H -0.25 -11.83 7.11 99.48 0.71 -11.12 16 14 C 0.21 9.72 5.02 85.63 0.43 10.15 16 15 C 0.06 2.66 6.64 41.55 0.28 2.93 16 16 C -0.11 -4.86 11.61 83.15 0.96 -3.89 16 17 N -0.40 -14.59 2.95 -353.31 -1.04 -15.63 16 18 C 0.23 7.74 7.81 134.07 1.05 8.78 16 19 C -0.10 -2.03 10.10 22.42 0.23 -1.81 16 20 C -0.06 -0.80 10.06 22.27 0.22 -0.57 16 21 C -0.14 -2.37 9.95 22.11 0.22 -2.15 16 22 C 0.22 6.43 8.24 83.31 0.69 7.12 16 23 F -0.12 -3.77 17.20 44.97 0.77 -2.99 16 24 N -0.51 -20.76 11.32 -182.43 -2.06 -22.82 16 25 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.04 1.60 8.04 -2.39 -0.02 1.58 16 33 H 0.06 2.29 8.07 -2.39 -0.02 2.27 16 34 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.08 3.21 8.08 -2.38 -0.02 3.19 16 36 H 0.05 2.61 3.26 -2.39 -0.01 2.60 16 37 H 0.16 7.58 8.06 -2.91 -0.02 7.56 16 38 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 39 H 0.21 0.51 8.06 -2.91 -0.02 0.49 16 40 H 0.20 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -75.38 338.18 6.12 -69.26 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.99 Total: 11.84 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 6.91 Total: 2.83 kcal Atomic # 7 Polarization: -124.67 SS G_CDS: -4.27 Total: -128.94 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.77 Total: -2.99 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.72 Total: 48.01 kcal Total: -75.38 6.12 -69.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139574069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.705 kcal (2) G-P(sol) polarization free energy of solvation -75.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds