Wall clock time and date at job start Tue Mar 31 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46828 * 2 1 4 4 N 1.46909 * 109.46856 * 174.86107 * 3 2 1 5 5 C 1.46902 * 110.99669 * 199.77710 * 4 3 2 6 6 C 1.50700 * 109.47529 * 66.04814 * 5 4 3 7 7 H 1.07996 * 119.99643 * 359.97438 * 6 5 4 8 8 C 1.37870 * 119.99892 * 179.97438 * 6 5 4 9 9 N 1.31505 * 120.00405 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99886 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46968 * 59.99744 * 10 8 6 12 12 H 1.48496 * 109.47393 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47115 * 300.00289 * 10 8 6 14 14 C 1.46894 * 110.99530 * 75.82438 * 4 3 2 15 15 C 1.50706 * 109.46790 * 199.49720 * 14 4 3 16 16 N 1.30249 * 126.09498 * 265.15811 * 15 14 4 17 17 N 1.39875 * 110.07876 * 180.14822 * 16 15 14 18 18 H 0.97001 * 125.47163 * 179.87128 * 17 16 15 19 19 C 1.37121 * 109.06349 * 359.59778 * 17 16 15 20 20 C 1.39276 * 133.81668 * 180.23497 * 19 17 16 21 21 C 1.36580 * 119.88497 * 180.02562 * 20 19 17 22 22 C 1.39143 * 120.79318 * 359.97438 * 21 20 19 23 23 F 1.35109 * 119.71412 * 179.97438 * 22 21 20 24 24 C 1.36645 * 120.57709 * 0.02562 * 22 21 20 25 25 C 1.39970 * 119.61525 * 0.02562 * 24 22 21 26 26 H 1.09005 * 109.47151 * 60.00428 * 1 2 3 27 27 H 1.09008 * 109.46709 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47273 * 299.99842 * 1 2 3 29 29 H 1.08997 * 109.47351 * 239.99647 * 2 1 3 30 30 H 1.09000 * 109.46804 * 119.99872 * 2 1 3 31 31 H 1.09003 * 109.47184 * 54.86759 * 3 2 1 32 32 H 1.08994 * 109.47450 * 294.86114 * 3 2 1 33 33 H 1.08999 * 109.46722 * 186.05029 * 5 4 3 34 34 H 1.09004 * 109.46866 * 306.04474 * 5 4 3 35 35 H 0.97000 * 120.00722 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47151 * 79.49932 * 14 4 3 37 37 H 1.09002 * 109.47422 * 319.49511 * 14 4 3 38 38 H 1.08005 * 120.06099 * 359.97276 * 20 19 17 39 39 H 1.08000 * 119.60509 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.18999 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5038 1.4444 0.1241 5 6 3.9907 2.7489 0.5922 6 6 3.5113 2.9882 2.0007 7 1 2.9051 2.2457 2.4982 8 6 3.8465 4.1551 2.6541 9 7 4.5842 5.0594 2.0481 10 14 3.2516 4.4520 4.3998 11 1 3.7706 3.3813 5.2884 12 1 3.7450 5.7701 4.8734 13 1 1.7669 4.4402 4.4255 14 6 4.1401 1.0697 -1.1458 15 6 5.5541 0.6184 -0.8850 16 7 6.6225 1.3595 -0.9611 17 7 7.7566 0.6000 -0.6553 18 1 8.6689 0.9294 -0.6461 19 6 7.3711 -0.6833 -0.3643 20 6 8.0593 -1.8371 0.0031 21 6 7.3727 -2.9956 0.2306 22 6 5.9881 -3.0404 0.1004 23 9 5.3310 -4.1984 0.3302 24 6 5.2872 -1.9238 -0.2587 25 6 5.9701 -0.7256 -0.4979 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6034 1.9822 0.8405 32 1 1.7537 1.9291 -0.9324 33 1 5.0805 2.7582 0.5728 34 1 3.6090 3.5345 -0.0600 35 1 4.8204 5.8802 2.5079 36 1 4.1508 1.9302 -1.8146 37 1 3.5788 0.2574 -1.6077 38 1 9.1341 -1.8159 0.1071 39 1 7.9109 -3.8875 0.5156 40 1 4.2125 -1.9655 -0.3575 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144199404.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:34 Heat of formation + Delta-G solvation = 35.729769 kcal Electronic energy + Delta-G solvation = -23103.359493 eV Core-core repulsion = 19640.585337 eV Total energy + Delta-G solvation = -3462.774156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.68668 -41.09586 -37.30572 -36.66417 -33.22709 -32.82901 -31.72860 -30.00446 -29.04856 -27.52280 -26.26670 -24.07526 -23.26588 -22.11301 -21.39258 -20.44610 -19.29968 -17.87899 -17.46263 -16.42090 -16.17710 -15.51457 -15.16668 -15.02010 -14.86647 -14.51238 -14.10278 -14.07842 -13.58497 -13.40791 -13.14218 -12.77464 -12.58139 -12.04461 -11.85176 -11.71714 -11.46345 -11.36516 -11.14610 -10.99433 -10.80737 -10.71678 -10.45987 -10.29893 -10.05499 -9.98923 -9.67543 -9.16558 -8.62107 -8.40580 -7.78124 -7.30251 -5.99125 -4.00299 0.92975 1.40042 2.64229 2.86281 3.34513 3.38553 3.41645 3.68443 4.33593 4.44599 4.56154 4.64518 4.84403 5.00176 5.06143 5.27920 5.35988 5.43568 5.54856 5.62284 5.69080 5.81265 5.83137 5.92654 5.99509 6.07952 6.17643 6.21143 6.25056 6.27128 6.45099 6.55839 6.71338 6.83694 6.89364 7.33313 7.37195 7.43366 7.80483 7.85475 8.12200 8.20241 8.54073 9.06820 9.63061 11.11508 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012564 B = 0.005250 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.039893 B = 5332.113886 C = 6253.251294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.062 3.938 4 N -0.531 5.531 5 C 0.191 3.809 6 C -0.507 4.507 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.126 3.874 15 C 0.133 3.867 16 N -0.230 5.230 17 N -0.509 5.509 18 H 0.439 0.561 19 C 0.117 3.883 20 C -0.116 4.116 21 C -0.106 4.106 22 C 0.048 3.952 23 F -0.145 7.145 24 C -0.060 4.060 25 C -0.134 4.134 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.021 0.979 33 H 0.038 0.962 34 H -0.009 1.009 35 H 0.261 0.739 36 H 0.049 0.951 37 H 0.085 0.915 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.889 -14.290 -7.126 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.066 4.066 4 N -0.256 5.256 5 C 0.066 3.934 6 C -0.545 4.545 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.005 4.005 15 C -0.046 4.046 16 N -0.044 5.044 17 N -0.222 5.222 18 H 0.283 0.717 19 C 0.000 4.000 20 C -0.138 4.138 21 C -0.127 4.127 22 C 0.027 3.973 23 F -0.124 7.124 24 C -0.082 4.082 25 C -0.142 4.142 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.009 0.991 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.557 -13.280 -6.998 15.427 hybrid contribution -0.175 0.154 0.745 0.781 sum 3.382 -13.127 -6.253 14.928 Atomic orbital electron populations 1.21728 0.96459 1.00850 1.01649 1.21573 0.94620 0.97862 1.01782 1.22061 0.88190 0.95535 1.00793 1.62051 1.04718 1.34979 1.23845 1.19814 0.96597 0.81972 0.95021 1.21104 1.32276 1.02590 0.98567 0.91922 1.24964 0.95370 0.96088 0.98085 1.69956 1.37485 1.08726 1.37436 0.86611 0.79061 0.77221 0.84812 1.20274 1.21409 1.20222 1.20452 0.86705 0.99917 0.93389 1.23498 0.95275 0.88972 0.96837 1.76751 0.92183 1.17757 1.17725 1.45953 1.08543 1.05244 1.62510 0.71699 1.18887 0.94290 0.87455 0.99326 1.19569 0.99704 0.89767 1.04788 1.20580 0.92447 0.98723 1.00950 1.16961 0.90273 0.82359 1.07708 1.91475 1.81211 1.46806 1.92920 1.20262 1.00676 0.89786 0.97445 1.19453 0.91795 0.94395 1.08584 0.93254 0.93287 0.92633 0.93075 0.91278 0.89199 0.96040 0.94346 0.99089 0.92963 0.93260 0.89678 0.84959 0.84476 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.77 5.98 -26.73 -0.16 -1.93 16 3 C 0.06 1.14 4.79 -3.82 -0.02 1.12 16 4 N -0.53 -11.08 4.35 -237.51 -1.03 -12.11 16 5 C 0.19 4.97 4.55 -4.97 -0.02 4.95 16 6 C -0.51 -14.23 8.23 -34.44 -0.28 -14.51 16 7 H 0.06 1.74 7.31 -52.49 -0.38 1.35 16 8 C 0.06 1.61 5.46 -17.83 -0.10 1.51 16 9 N -0.90 -26.96 13.28 55.43 0.74 -26.22 16 10 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.13 2.24 5.41 -4.98 -0.03 2.21 16 15 C 0.13 2.44 6.31 -80.19 -0.51 1.93 16 16 N -0.23 -4.36 12.07 34.84 0.42 -3.94 16 17 N -0.51 -7.75 7.37 32.37 0.24 -7.51 16 18 H 0.44 5.13 8.96 -182.77 -1.64 3.49 16 19 C 0.12 1.73 7.34 -84.15 -0.62 1.11 16 20 C -0.12 -1.35 10.03 -39.79 -0.40 -1.74 16 21 C -0.11 -1.21 9.94 -39.84 -0.40 -1.60 16 22 C 0.05 0.64 7.24 -39.82 -0.29 0.35 16 23 F -0.15 -1.96 17.25 2.25 0.04 -1.92 16 24 C -0.06 -0.88 10.03 -39.51 -0.40 -1.27 16 25 C -0.13 -2.19 6.33 -105.21 -0.67 -2.86 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.68 6.90 -51.93 -0.36 0.32 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.86 6.58 -51.93 -0.34 1.52 16 32 H 0.02 0.37 8.00 -51.93 -0.42 -0.04 16 33 H 0.04 1.10 7.04 -51.93 -0.37 0.73 16 34 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.05 0.90 8.00 -51.93 -0.42 0.48 16 37 H 0.09 1.25 6.57 -51.93 -0.34 0.91 16 38 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -31.98 339.25 -9.79 -41.77 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.78 Total: 0.23 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -3.51 Total: -12.25 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.36 Total: -49.78 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.98 -9.79 -41.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144199404.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.498 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds